Clone Sequence Records
BS07747.3prime Sequence
852 bp (736 high quality bases) assembled on 2006-01-06
> BS07747.3prime
ATGGTCTAGAAAGCTTCTACTCAATGTCATCATCTTCGACCGTCGTGTCT
TTCGGGTTGTCCAGGAGTAGGGCCTCGTTATGATGCCTCACGTTGTAATG
GAAGAAGAAGGACTTGCTGTACTCGAAGGTGGAGATCATAATGGCGCAGG
CAGGTGCCACCTTCAGAAGCCTGGGTCCGCATCCTGCGAAGAGTCCCCGC
ACGCCGTGTGTCCTGTAAATACCCGTTAGTCTGCTGAAGGTCGACTTCTT
TCCAAAATCCCTCGCCGGCGAGTCCGTGAAGATGACCCTTTCTCCAAACT
CAATCTGCTCATGTGTCTTGACCACGTCGAAAGGAGTGGTCACAATGGCG
GCCACTGTCCCTGCCATCACGCCTGCCAAGAAACTCAGACTGAACGAGGG
CTGTGAGCCATGGCCGAGATTCTGTTTTAGGCTCTCATAGATGGGCCAGT
AAATCCCTGAAAAGGGCACGTCCCTGAGGATCGTGGGACGCAGGCCCCGC
CACAAGCCCCACACGCCCTGAAGGGCCACCACACTCCGGACGAACTGCAG
CATCTGGGCGTAGGTCTGGCGCTGGGCCTGCATCTTGGTTCTCACCAGCT
CGATGGGACTCACCACGGTAACAGCACAAATCCGAGCAGTCACCCCGGAC
ATCATGGGAACCACCGACGGTAGACTTTTCTTGGTATCCCTGATTTCAAG
GTGCCGGGGCTCCTGACTCTTATTATAGTGGCTCTCGTAAATCTGGAGGT
ATCTGGCCTTGAACTGTTCATAGGCCACGAAATAGATTATGGTGGAGGGC
AGGGCGGAGACGAGGGTGGGACCCAGGCCGGAACAAAGAGCGGCCAATCC
TT
BS07747.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2616-PA | 1350 | CG2616-RA | 515..1350 | 852..17 | 4155 | 99.8 | Minus |
CG14208-PB | 1326 | Tyler-RB | 1228..1286 | 151..93 | 170 | 91.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2616-RB | 1820 | CG2616-RB | 645..1481 | 852..16 | 4170 | 99.9 | Minus |
CG2616-RA | 1525 | CG2616-RA | 645..1481 | 852..16 | 4170 | 99.9 | Minus |
Shawn-RE | 3255 | CG14209-RE | 1469..1527 | 151..93 | 220 | 91.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7723701..7724376 | 691..16 | 3380 | 100 | Minus |
3R | 32079331 | 3R | 7723061..7723224 | 852..689 | 805 | 99.4 | Minus |
X | 23542271 | X | 19613229..19613287 | 151..93 | 220 | 91.5 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:06:37 has no hits.
BS07747.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:25 Download gff for
BS07747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-PA | 515..1350 | 17..852 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:56 Download gff for
BS07747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-PA | 515..1350 | 17..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:41 Download gff for
BS07747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 645..1481 | 16..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:39:57 Download gff for
BS07747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 645..1481 | 16..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:39:57 Download gff for
BS07747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7723061..7723223 | 690..852 | 99 | -> | Minus |
3R | 7723703..7724376 | 16..689 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:41 Download gff for
BS07747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3548783..3548945 | 690..852 | 99 | -> | Minus |
arm_3R | 3549425..3550098 | 16..689 | 100 | | Minus |
BS07747.5prime Sequence
912 bp (789 high quality bases) assembled on 2006-01-06
> BS07747.5prime
GAAGTTATCAGTCGACATGTCGAAGGAAGACTCAGGCGCATCCAGTGCAG
AGGCGAATCCAGCTGAATCGGAAATTTCGATGGGTCGAGGACCCCGCCCA
AGGTCCTTTACTGGCGGCGGAGGCGGTGGCGGAACAGGTGGATCAGGTGG
AAGTGGTGGTACCTCCGGCGGCAACAATCTCAAGCCCGAAAGAAGCGCCC
GGGAAGATGACGCCATCAACCGTCTGACGGACTCGAAGTCGAGTCACCGA
AAGCTGCTCAGCGATCCGCGATTCCAGATTCGGCCGCTGCAGCAGGTAAT
CTCGGCCTGCACCGGGGCCATGATCACGGCCTGCTTCATGACGCCCCTGG
ACGTGATCAAGACTCGCATGCAGTCGCAGCAGTCGCCGGCCCACAAGTGC
TTCTTCTATTCGAACGGGCTGATGGACCACCTCTTCGCAAGTGGACCCAA
TGGCTCCGAGTTGGCGAGCCTGCGGCAAAGACCACAGTTTTCCAGCTCCT
GGGATGCTCTGATGAAAATCAGCCGGCACGAAGGATTGGCCGCTCTTTGG
TCCGGCCTGGGTCCCACCCTCGTCTCCGCCCTGCCCTCCACCATAATCTA
TTTCGTGGCCTATGAACAGTTCAAGGCCAGATACCTCCAGATTTACGAGA
GCCACTATAATAAGAGTCAGGAGCCCCGGCACCTTGAAATCAGGGATACC
AAGAAAAGTCTACCGTCGGTGGTTCCCATGATGTCCGGGGTGACTGCTCG
GATTTGTGCTGTTACCGTGGTGAGTCCCATCGAGCTGGTGAGAACCAAGA
TGCAGGCCCAGCGCCAGACCTACGCCCAGATGCTGCAGTTCGTCCGGAGT
GTGGTGGCCCTTCAGGGCGTGTGGGGCTTGTGGCGGGGCCTGCGTCCCAC
GATCCTCAGGGA
BS07747.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2616-PA | 1350 | CG2616-RA | 1..896 | 17..912 | 4480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:41:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2616-RB | 1820 | CG2616-RB | 125..1026 | 11..912 | 4495 | 99.9 | Plus |
CG2616-RA | 1525 | CG2616-RA | 125..1026 | 11..912 | 4495 | 99.9 | Plus |
Shawn-RE | 3255 | CG14209-RE | 1998..2161 | 277..434 | 220 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7722541..7723224 | 11..694 | 3405 | 99.9 | Plus |
3R | 32079331 | 3R | 7723701..7723921 | 692..912 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:41:53 has no hits.
BS07747.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:26 Download gff for
BS07747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-PA | 1..895 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:58 Download gff for
BS07747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-PA | 1..895 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:25 Download gff for
BS07747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 120..1025 | 3..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:18:32 Download gff for
BS07747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 120..1025 | 3..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:18:32 Download gff for
BS07747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7722536..7723223 | 3..693 | 99 | -> | Plus |
3R | 7723703..7723920 | 694..911 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:25 Download gff for
BS07747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3548258..3548945 | 3..693 | 99 | -> | Plus |
arm_3R | 3549425..3549642 | 694..911 | 100 | | Plus |
BS07747.complete Sequence
1382 bp (1382 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635971
> BS07747.complete
GAAGTTATCAGTCGACATGTCGAAGGAAGACTCAGGCGCATCCAGTGCAG
AGGCGAATCCAGCTGAATCGGAAATTTCGATGGGTCGAGGACCCCGCCCA
AGGTCCTTTACTGGCGGCGGAGGCGGTGGCGGAACAGGTGGATCAGGTGG
AAGTGGTGGTACCTCCGGCGGCAACAATCTCAAGCCCGAAAGAAGCGCCC
GGGAAGATGACGCCATCAACCGTCTGACGGACTCGAAGTCGAGTCACCGA
AAGCTGCTCAGCGATCCGCGATTCCAGATTCGGCCGCTGCAGCAGGTAAT
CTCGGCCTGCACCGGGGCCATGATCACGGCCTGCTTCATGACGCCCCTGG
ACGTGATCAAGACTCGCATGCAGTCGCAGCAGTCGCCGGCCCACAAGTGC
TTCTTCTATTCGAACGGGCTGATGGACCACCTCTTCGCAAGTGGACCCAA
TGGCTCCGAGTTGGCGAGCCTGCGGCAAAGACCACAGTTTTCCAGCTCCT
GGGATGCTCTGATGAAAATCAGCCGGCACGAAGGATTGGCCGCTCTTTGG
TCCGGCCTGGGTCCCACCCTCGTCTCCGCCCTGCCCTCCACCATAATCTA
TTTCGTGGCCTATGAACAGTTCAAGGCCAGATACCTCCAGATTTACGAGA
GCCACTATAATAAGAGTCAGGAGCCCCGGCACCTTGAAATCAGGGATACC
AAGAAAAGTCTACCGTCGGTGGTTCCCATGATGTCCGGGGTGACTGCTCG
GATTTGTGCTGTTACCGTGGTGAGTCCCATCGAGCTGGTGAGAACCAAGA
TGCAGGCCCAGCGCCAGACCTACGCCCAGATGCTGCAGTTCGTCCGGAGT
GTGGTGGCCCTTCAGGGCGTGTGGGGCTTGTGGCGGGGCCTGCGTCCCAC
GATCCTCAGGGACGTGCCCTTTTCAGGGATTTACTGGCCCATCTATGAGA
GCCTAAAACAGAATCTCGGCCATGGCTCACAGCCCTCGTTCAGTCTGAGT
TTCTTGGCAGGCGTGATGGCAGGGACAGTGGCCGCCATTGTGACCACTCC
TTTCGACGTGGTCAAGACACATGAGCAGATTGAGTTTGGAGAAAGGGTCA
TCTTCACGGACTCGCCGGCGAGGGATTTTGGAAAGAAGTCGACCTTCAGC
AGACTAACGGGTATTTACAGGACACACGGCGTGCGGGGACTCTTCGCAGG
ATGCGGACCCAGGCTTCTGAAGGTGGCACCTGCCTGCGCCATTATGATCT
CCACCTTCGAGTACAGCAAGTCCTTCTTCTTCCATTACAACGTGAGGCAT
CATAACGAGGCCCTACTCCTGGACAACCCGAAAGACACGACGGTCGAAGA
TGATGACATTGAGTAGAAGCTTTCTAGACCAT
BS07747.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2616-RB | 1350 | CG2616-PB | 1..1350 | 17..1366 | 6750 | 100 | Plus |
CG2616-RA | 1350 | CG2616-PA | 1..1350 | 17..1366 | 6750 | 100 | Plus |
Tyler-RB | 1326 | CG14208-PB | 1228..1286 | 1232..1290 | 220 | 91.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2616-RB | 1820 | CG2616-RB | 125..1481 | 11..1367 | 6770 | 99.9 | Plus |
CG2616-RA | 1525 | CG2616-RA | 125..1481 | 11..1367 | 6770 | 99.9 | Plus |
Shawn-RE | 3255 | CG14209-RE | 1469..1527 | 1232..1290 | 220 | 91.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7722541..7723224 | 11..694 | 3405 | 99.9 | Plus |
3R | 32079331 | 3R | 7723701..7724376 | 692..1367 | 3380 | 100 | Plus |
X | 23542271 | X | 19613229..19613287 | 1232..1290 | 220 | 91.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:34:13 has no hits.
BS07747.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:23 Download gff for
BS07747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 1..1350 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:11 Download gff for
BS07747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 120..1481 | 3..1367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:30 Download gff for
BS07747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 131..1480 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:24 Download gff for
BS07747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 120..1481 | 3..1367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:19 Download gff for
BS07747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2616-RA | 131..1480 | 17..1366 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:19 Download gff for
BS07747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7722547..7723223 | 17..693 | 100 | -> | Plus |
3R | 7723703..7724375 | 694..1366 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:30 Download gff for
BS07747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3548269..3548945 | 17..693 | 100 | -> | Plus |
arm_3R | 3549425..3550097 | 694..1366 | 100 | | Plus |
BS07747.pep Sequence
Translation from 16 to 1365
> BS07747.pep
MSKEDSGASSAEANPAESEISMGRGPRPRSFTGGGGGGGTGGSGGSGGTS
GGNNLKPERSAREDDAINRLTDSKSSHRKLLSDPRFQIRPLQQVISACTG
AMITACFMTPLDVIKTRMQSQQSPAHKCFFYSNGLMDHLFASGPNGSELA
SLRQRPQFSSSWDALMKISRHEGLAALWSGLGPTLVSALPSTIIYFVAYE
QFKARYLQIYESHYNKSQEPRHLEIRDTKKSLPSVVPMMSGVTARICAVT
VVSPIELVRTKMQAQRQTYAQMLQFVRSVVALQGVWGLWRGLRPTILRDV
PFSGIYWPIYESLKQNLGHGSQPSFSLSFLAGVMAGTVAAIVTTPFDVVK
THEQIEFGERVIFTDSPARDFGKKSTFSRLTGIYRTHGVRGLFAGCGPRL
LKVAPACAIMISTFEYSKSFFFHYNVRHHNEALLLDNPKDTTVEDDDIE*
BS07747.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2616-PB | 449 | CG2616-PB | 1..449 | 1..449 | 2336 | 100 | Plus |
CG2616-PA | 449 | CG2616-PA | 1..449 | 1..449 | 2336 | 100 | Plus |
Shawn-PE | 387 | CG14209-PE | 22..378 | 73..432 | 1122 | 60.2 | Plus |
Shawn-PD | 387 | CG14209-PD | 22..378 | 73..432 | 1122 | 60.2 | Plus |
Shawn-PC | 387 | CG14209-PC | 22..378 | 73..432 | 1122 | 60.2 | Plus |