Clone BS07747 Report

Search the DGRC for BS07747

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG2616-RA
Protein status:BS07747.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07747.3prime Sequence

852 bp (736 high quality bases) assembled on 2006-01-06

> BS07747.3prime
ATGGTCTAGAAAGCTTCTACTCAATGTCATCATCTTCGACCGTCGTGTCT
TTCGGGTTGTCCAGGAGTAGGGCCTCGTTATGATGCCTCACGTTGTAATG
GAAGAAGAAGGACTTGCTGTACTCGAAGGTGGAGATCATAATGGCGCAGG
CAGGTGCCACCTTCAGAAGCCTGGGTCCGCATCCTGCGAAGAGTCCCCGC
ACGCCGTGTGTCCTGTAAATACCCGTTAGTCTGCTGAAGGTCGACTTCTT
TCCAAAATCCCTCGCCGGCGAGTCCGTGAAGATGACCCTTTCTCCAAACT
CAATCTGCTCATGTGTCTTGACCACGTCGAAAGGAGTGGTCACAATGGCG
GCCACTGTCCCTGCCATCACGCCTGCCAAGAAACTCAGACTGAACGAGGG
CTGTGAGCCATGGCCGAGATTCTGTTTTAGGCTCTCATAGATGGGCCAGT
AAATCCCTGAAAAGGGCACGTCCCTGAGGATCGTGGGACGCAGGCCCCGC
CACAAGCCCCACACGCCCTGAAGGGCCACCACACTCCGGACGAACTGCAG
CATCTGGGCGTAGGTCTGGCGCTGGGCCTGCATCTTGGTTCTCACCAGCT
CGATGGGACTCACCACGGTAACAGCACAAATCCGAGCAGTCACCCCGGAC
ATCATGGGAACCACCGACGGTAGACTTTTCTTGGTATCCCTGATTTCAAG
GTGCCGGGGCTCCTGACTCTTATTATAGTGGCTCTCGTAAATCTGGAGGT
ATCTGGCCTTGAACTGTTCATAGGCCACGAAATAGATTATGGTGGAGGGC
AGGGCGGAGACGAGGGTGGGACCCAGGCCGGAACAAAGAGCGGCCAATCC
TT

BS07747.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2616-PA 1350 CG2616-RA 515..1350 852..17 4155 99.8 Minus
CG14208-PB 1326 Tyler-RB 1228..1286 151..93 170 91.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2616-RB 1820 CG2616-RB 645..1481 852..16 4170 99.9 Minus
CG2616-RA 1525 CG2616-RA 645..1481 852..16 4170 99.9 Minus
Shawn-RE 3255 CG14209-RE 1469..1527 151..93 220 91.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7723701..7724376 691..16 3380 100 Minus
3R 32079331 3R 7723061..7723224 852..689 805 99.4 Minus
X 23542271 X 19613229..19613287 151..93 220 91.5 Minus
Blast to na_te.dros performed on 2015-01-31 16:06:37 has no hits.

BS07747.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:25 Download gff for BS07747.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2616-PA 515..1350 17..852 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:56 Download gff for BS07747.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2616-PA 515..1350 17..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:41 Download gff for BS07747.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 645..1481 16..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:39:57 Download gff for BS07747.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 645..1481 16..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:39:57 Download gff for BS07747.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7723061..7723223 690..852 99 -> Minus
3R 7723703..7724376 16..689 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:41 Download gff for BS07747.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3548783..3548945 690..852 99 -> Minus
arm_3R 3549425..3550098 16..689 100   Minus

BS07747.5prime Sequence

912 bp (789 high quality bases) assembled on 2006-01-06

> BS07747.5prime
GAAGTTATCAGTCGACATGTCGAAGGAAGACTCAGGCGCATCCAGTGCAG
AGGCGAATCCAGCTGAATCGGAAATTTCGATGGGTCGAGGACCCCGCCCA
AGGTCCTTTACTGGCGGCGGAGGCGGTGGCGGAACAGGTGGATCAGGTGG
AAGTGGTGGTACCTCCGGCGGCAACAATCTCAAGCCCGAAAGAAGCGCCC
GGGAAGATGACGCCATCAACCGTCTGACGGACTCGAAGTCGAGTCACCGA
AAGCTGCTCAGCGATCCGCGATTCCAGATTCGGCCGCTGCAGCAGGTAAT
CTCGGCCTGCACCGGGGCCATGATCACGGCCTGCTTCATGACGCCCCTGG
ACGTGATCAAGACTCGCATGCAGTCGCAGCAGTCGCCGGCCCACAAGTGC
TTCTTCTATTCGAACGGGCTGATGGACCACCTCTTCGCAAGTGGACCCAA
TGGCTCCGAGTTGGCGAGCCTGCGGCAAAGACCACAGTTTTCCAGCTCCT
GGGATGCTCTGATGAAAATCAGCCGGCACGAAGGATTGGCCGCTCTTTGG
TCCGGCCTGGGTCCCACCCTCGTCTCCGCCCTGCCCTCCACCATAATCTA
TTTCGTGGCCTATGAACAGTTCAAGGCCAGATACCTCCAGATTTACGAGA
GCCACTATAATAAGAGTCAGGAGCCCCGGCACCTTGAAATCAGGGATACC
AAGAAAAGTCTACCGTCGGTGGTTCCCATGATGTCCGGGGTGACTGCTCG
GATTTGTGCTGTTACCGTGGTGAGTCCCATCGAGCTGGTGAGAACCAAGA
TGCAGGCCCAGCGCCAGACCTACGCCCAGATGCTGCAGTTCGTCCGGAGT
GTGGTGGCCCTTCAGGGCGTGTGGGGCTTGTGGCGGGGCCTGCGTCCCAC
GATCCTCAGGGA

BS07747.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2616-PA 1350 CG2616-RA 1..896 17..912 4480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2616-RB 1820 CG2616-RB 125..1026 11..912 4495 99.9 Plus
CG2616-RA 1525 CG2616-RA 125..1026 11..912 4495 99.9 Plus
Shawn-RE 3255 CG14209-RE 1998..2161 277..434 220 76.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7722541..7723224 11..694 3405 99.9 Plus
3R 32079331 3R 7723701..7723921 692..912 1105 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:41:53 has no hits.

BS07747.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:26 Download gff for BS07747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2616-PA 1..895 17..911 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:15:58 Download gff for BS07747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2616-PA 1..895 17..911 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:25 Download gff for BS07747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 120..1025 3..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:18:32 Download gff for BS07747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 120..1025 3..911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:18:32 Download gff for BS07747.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7722536..7723223 3..693 99 -> Plus
3R 7723703..7723920 694..911 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:25 Download gff for BS07747.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3548258..3548945 3..693 99 -> Plus
arm_3R 3549425..3549642 694..911 100   Plus

BS07747.complete Sequence

1382 bp (1382 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635971

> BS07747.complete
GAAGTTATCAGTCGACATGTCGAAGGAAGACTCAGGCGCATCCAGTGCAG
AGGCGAATCCAGCTGAATCGGAAATTTCGATGGGTCGAGGACCCCGCCCA
AGGTCCTTTACTGGCGGCGGAGGCGGTGGCGGAACAGGTGGATCAGGTGG
AAGTGGTGGTACCTCCGGCGGCAACAATCTCAAGCCCGAAAGAAGCGCCC
GGGAAGATGACGCCATCAACCGTCTGACGGACTCGAAGTCGAGTCACCGA
AAGCTGCTCAGCGATCCGCGATTCCAGATTCGGCCGCTGCAGCAGGTAAT
CTCGGCCTGCACCGGGGCCATGATCACGGCCTGCTTCATGACGCCCCTGG
ACGTGATCAAGACTCGCATGCAGTCGCAGCAGTCGCCGGCCCACAAGTGC
TTCTTCTATTCGAACGGGCTGATGGACCACCTCTTCGCAAGTGGACCCAA
TGGCTCCGAGTTGGCGAGCCTGCGGCAAAGACCACAGTTTTCCAGCTCCT
GGGATGCTCTGATGAAAATCAGCCGGCACGAAGGATTGGCCGCTCTTTGG
TCCGGCCTGGGTCCCACCCTCGTCTCCGCCCTGCCCTCCACCATAATCTA
TTTCGTGGCCTATGAACAGTTCAAGGCCAGATACCTCCAGATTTACGAGA
GCCACTATAATAAGAGTCAGGAGCCCCGGCACCTTGAAATCAGGGATACC
AAGAAAAGTCTACCGTCGGTGGTTCCCATGATGTCCGGGGTGACTGCTCG
GATTTGTGCTGTTACCGTGGTGAGTCCCATCGAGCTGGTGAGAACCAAGA
TGCAGGCCCAGCGCCAGACCTACGCCCAGATGCTGCAGTTCGTCCGGAGT
GTGGTGGCCCTTCAGGGCGTGTGGGGCTTGTGGCGGGGCCTGCGTCCCAC
GATCCTCAGGGACGTGCCCTTTTCAGGGATTTACTGGCCCATCTATGAGA
GCCTAAAACAGAATCTCGGCCATGGCTCACAGCCCTCGTTCAGTCTGAGT
TTCTTGGCAGGCGTGATGGCAGGGACAGTGGCCGCCATTGTGACCACTCC
TTTCGACGTGGTCAAGACACATGAGCAGATTGAGTTTGGAGAAAGGGTCA
TCTTCACGGACTCGCCGGCGAGGGATTTTGGAAAGAAGTCGACCTTCAGC
AGACTAACGGGTATTTACAGGACACACGGCGTGCGGGGACTCTTCGCAGG
ATGCGGACCCAGGCTTCTGAAGGTGGCACCTGCCTGCGCCATTATGATCT
CCACCTTCGAGTACAGCAAGTCCTTCTTCTTCCATTACAACGTGAGGCAT
CATAACGAGGCCCTACTCCTGGACAACCCGAAAGACACGACGGTCGAAGA
TGATGACATTGAGTAGAAGCTTTCTAGACCAT

BS07747.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2616-RB 1350 CG2616-PB 1..1350 17..1366 6750 100 Plus
CG2616-RA 1350 CG2616-PA 1..1350 17..1366 6750 100 Plus
Tyler-RB 1326 CG14208-PB 1228..1286 1232..1290 220 91.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2616-RB 1820 CG2616-RB 125..1481 11..1367 6770 99.9 Plus
CG2616-RA 1525 CG2616-RA 125..1481 11..1367 6770 99.9 Plus
Shawn-RE 3255 CG14209-RE 1469..1527 1232..1290 220 91.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7722541..7723224 11..694 3405 99.9 Plus
3R 32079331 3R 7723701..7724376 692..1367 3380 100 Plus
X 23542271 X 19613229..19613287 1232..1290 220 91.5 Plus
Blast to na_te.dros performed on 2014-11-27 14:34:13 has no hits.

BS07747.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:23 Download gff for BS07747.complete
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 1..1350 17..1366 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:11 Download gff for BS07747.complete
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 120..1481 3..1367 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:30 Download gff for BS07747.complete
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 131..1480 17..1366 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:24 Download gff for BS07747.complete
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 120..1481 3..1367 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:19 Download gff for BS07747.complete
Subject Subject Range Query Range Percent Splice Strand
CG2616-RA 131..1480 17..1366 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:19 Download gff for BS07747.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7722547..7723223 17..693 100 -> Plus
3R 7723703..7724375 694..1366 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:30 Download gff for BS07747.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3548269..3548945 17..693 100 -> Plus
arm_3R 3549425..3550097 694..1366 100   Plus

BS07747.pep Sequence

Translation from 16 to 1365

> BS07747.pep
MSKEDSGASSAEANPAESEISMGRGPRPRSFTGGGGGGGTGGSGGSGGTS
GGNNLKPERSAREDDAINRLTDSKSSHRKLLSDPRFQIRPLQQVISACTG
AMITACFMTPLDVIKTRMQSQQSPAHKCFFYSNGLMDHLFASGPNGSELA
SLRQRPQFSSSWDALMKISRHEGLAALWSGLGPTLVSALPSTIIYFVAYE
QFKARYLQIYESHYNKSQEPRHLEIRDTKKSLPSVVPMMSGVTARICAVT
VVSPIELVRTKMQAQRQTYAQMLQFVRSVVALQGVWGLWRGLRPTILRDV
PFSGIYWPIYESLKQNLGHGSQPSFSLSFLAGVMAGTVAAIVTTPFDVVK
THEQIEFGERVIFTDSPARDFGKKSTFSRLTGIYRTHGVRGLFAGCGPRL
LKVAPACAIMISTFEYSKSFFFHYNVRHHNEALLLDNPKDTTVEDDDIE*

BS07747.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2616-PB 449 CG2616-PB 1..449 1..449 2336 100 Plus
CG2616-PA 449 CG2616-PA 1..449 1..449 2336 100 Plus
Shawn-PE 387 CG14209-PE 22..378 73..432 1122 60.2 Plus
Shawn-PD 387 CG14209-PD 22..378 73..432 1122 60.2 Plus
Shawn-PC 387 CG14209-PC 22..378 73..432 1122 60.2 Plus