Clone BS07752 Report

Search the DGRC for BS07752

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG11200-RA
Protein status:BS07752.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07752.3prime Sequence

900 bp (813 high quality bases) assembled on 2006-01-06

> BS07752.3prime
ATGGTCTAGAAAGCTTTTAGTATTCGCCATTTCCGTACTGCTGGATTTTC
AACAGGTCGCAGGAGAACTGGAAAAGCTGCTCGCACTTTGCCGGCTTCTT
GGCATCCGGATGGAAAGGACCCTTTCCGCCGTTGGAGAGGTAAGTACCAC
CCTGACCCTCGATGGAGGGATCAATGGCCGCGAAGACCACCGTGCGGGAT
CCCCTTTCCGGAGTCTTGAAGAATAGCTTCTTGAAAATGGGCACCGATGT
GGTGGCCGAGTGCTCGAACAGATCCGTGTCCACAATGCCCGGATGCACCA
CATTGACCTGCACGTGCGACTTTTCTGCATCCAGCAGTGTCTGCAGATGG
CGGGTGAACAAGATCTGAGCAAGCTTTGACTGACTGTAGGCGGTTCCCGG
GTAATAGTGTTTTGTTCCGTTAATGTCCTTATAGTTGATGCGTCCAATGA
GATTCACGCAGGAGCTGACGTTCACGATCCTGGAGTTCCTTCCCTCCTTG
CCTGCCGCCCTCAATTGAGGCAGAAGCAGGTGGGTGAGCAGAAAGTGTCC
CAGGAAGTTGATGGCAAAGTGCGACTCGTAGCCATCGGCGGTTAGTTTGA
AGGGCGCAAACATGATGCCAGCATTGTTCAGCAACAAATCCACTTTTGAA
TACCGCTCCTTGATGAGCTGAGCAAATGCCTTTACGGATTTCAGATCCCC
AACATCCAGTTGCTCGCAGATGAGCTTGCCCTTGGTAGCATTCAAGTCGA
CTATCGATGCAACTGCGGTTTCGGCAATTTTGGGATCACGAACGCCCATG
ACGACAGTCATGTCGCAGGCCAGCAGCTTCTCCACGATCCGCAGCCCGAT
GCCGCGATTGCCTCCGGTGATGACAGCAATGCGGGTCGGTTGTTTATAAA

BS07752.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11200-PB 1068 CG11200-RB 185..1068 900..17 4345 99.6 Minus
CG11200-PA 1068 CG11200-RA 185..1068 900..17 4345 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11200-RC 1335 CG11200-RC 337..1221 900..16 4380 99.7 Minus
CG11200-RA 1447 CG11200-RA 449..1333 900..16 4380 99.7 Minus
CG11200-RB 1688 CG11200-RB 690..1574 900..16 4380 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20304631..20305028 16..413 1990 100 Plus
2R 25286936 2R 20305086..20305468 414..796 1915 100 Plus
2R 25286936 2R 20306243..20306348 795..900 485 97.2 Plus
Blast to na_te.dros performed on 2015-02-08 15:02:36 has no hits.

BS07752.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:36 Download gff for BS07752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11200-PB 188..1068 17..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:12 Download gff for BS07752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11200-PA 188..1068 17..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:01:49 Download gff for BS07752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11200-RB 693..1581 9..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:41:10 Download gff for BS07752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11200-RB 693..1581 9..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:41:10 Download gff for BS07752.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20304624..20305028 9..413 99 <- Plus
2R 20305086..20305467 414..795 100 <- Plus
2R 20306244..20306345 796..897 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:01:49 Download gff for BS07752.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16193749..16193850 796..897 97   Plus
arm_2R 16192129..16192533 9..413 99 <- Plus
arm_2R 16192591..16192972 414..795 100 <- Plus

BS07752.5prime Sequence

868 bp (773 high quality bases) assembled on 2006-01-06

> BS07752.5prime
GAAGTTATCAGTCGACATGTTGGGAACTTTGCTGTGGATTTTCTTCGTCG
GCCTGCTGCTGTGTGCGTTCCTCTTTTCGAAGACCACCAAGGAGTTCCCG
AAGTCCTGGTTCGAGTGGAAGACTGAGTTTCGGTATCAGTACCTGGGAAT
CGTTGGGCTCGTCCACGATGCCCAGTATAAGGCACGGGATCGAGTGGCAC
TTTATAAACAACCGGACCGCATTGCTGTCATCACCGGAGGCAATCGCGGC
ATCGGACTGCGGATCGTGGAGAAGCTGCTGGCCTGCGACATGACTGTCGT
CATGGGCGTTCGTGATCCCAAAATTGCCGAAACCGCAGTTGCATCGATAG
TCGACTTGAATGCTACCAAGGGCAAGCTCATCTGCGAGCAACTGGATGTT
GGGGATCTGAAATCCGTAAAGGCATTTGCTCAGCTCATCAAGGAGCGGTA
TTCAAAAGTGGATTTGTTGCTGAACAATGCTGGCATCATGTTTGCGCCCT
TCAAACTAACCGCCGATGGCTACGAGTCGCACTTTGCCATCAACTTCCTG
GGACACTTTCTGCTCACCCACCTGCTTCTGCCTCAATTGAGGGCGGCAGG
CAAGGAGGGAAGGAACTCCAGGATCGTGAACGTCAGCTCCTGCGTGAATC
TCATTGGACGCATCAACTATAAGGACATTAACGGAACAAAACACTATTAC
CCGGGAACCGCCTACAGTCAGTCAAAGCTTGCTCAGATCTTGTTCACCCG
CCATCTGCAGACACTGCTGGATGCAGAAAAGTCGCACGTGCAGGTCAATG
TGGTGCATCGGGGCATTGTGGACACGGATCTGTTCGAGCACTCGGCCACC
ACATCGGTGCCCATTTTC

BS07752.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11200-PB 1068 CG11200-RB 1..852 17..868 4235 99.8 Plus
CG11200-PA 1068 CG11200-RA 1..852 17..868 4235 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11200-RC 1335 CG11200-RC 153..1004 17..868 4245 99.9 Plus
CG11200-RA 1447 CG11200-RA 265..1116 17..868 4245 99.9 Plus
CG11200-RB 1688 CG11200-RB 506..1357 17..868 4245 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20305086..20305468 687..305 1915 100 Minus
2R 25286936 2R 20306415..20306595 197..17 905 100 Minus
2R 25286936 2R 20304848..20305028 868..688 890 99.4 Minus
2R 25286936 2R 20306243..20306352 306..197 550 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:14:44 has no hits.

BS07752.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:37 Download gff for BS07752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11200-PB 1..852 17..868 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:14 Download gff for BS07752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11200-PA 1..852 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:22:03 Download gff for BS07752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11200-RB 501..1357 11..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:59 Download gff for BS07752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11200-RB 501..1357 11..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:59 Download gff for BS07752.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20306244..20306351 198..305 100 <- Minus
2R 20306415..20306600 11..197 98   Minus
2R 20304848..20305028 688..868 99 <- Minus
2R 20305086..20305467 306..687 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:22:03 Download gff for BS07752.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16192353..16192533 688..868 99 <- Minus
arm_2R 16192591..16192972 306..687 100 <- Minus
arm_2R 16193749..16193856 198..305 100 <- Minus
arm_2R 16193920..16194105 11..197 98   Minus

BS07752.complete Sequence

1100 bp (1100 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635973

> BS07752.complete
GAAGTTATCAGTCGACATGTTGGGAACTTTGCTGTGGATTTTCTTCGTCG
GCCTGCTGCTGTGTGCGTTCCTCTTTTCGAAGACCACCAAGGAGTTCCCG
AAGTCCTGGTTCGAGTGGAAGACTGAGTTTCGGTATCAGTACCTGGGAAT
CGTTGGGCTCGTCCACGATGCCCAGTATAAGGCACGGGATCGAGTGGCAC
TTTATAAACAACCGGACCGCATTGCTGTCATCACCGGAGGCAATCGCGGC
ATCGGACTGCGGATCGTGGAGAAGCTGCTGGCCTGCGACATGACTGTCGT
CATGGGCGTTCGTGATCCCAAAATTGCCGAAACCGCAGTTGCATCGATAG
TCGACTTGAATGCTACCAAGGGCAAGCTCATCTGCGAGCAACTGGATGTT
GGGGATCTGAAATCCGTAAAGGCATTTGCTCAGCTCATCAAGGAGCGGTA
TTCAAAAGTGGATTTGTTGCTGAACAATGCTGGCATCATGTTTGCGCCCT
TCAAACTAACCGCCGATGGCTACGAGTCGCACTTTGCCATCAACTTCCTG
GGACACTTTCTGCTCACCCACCTGCTTCTGCCTCAATTGAGGGCGGCAGG
CAAGGAGGGAAGGAACTCCAGGATCGTGAACGTCAGCTCCTGCGTGAATC
TCATTGGACGCATCAACTATAAGGACATTAACGGAACAAAACACTATTAC
CCGGGAACCGCCTACAGTCAGTCAAAGCTTGCTCAGATCTTGTTCACCCG
CCATCTGCAGACACTGCTGGATGCAGAAAAGTCGCACGTGCAGGTCAATG
TGGTGCATCCGGGCATTGTGGACACGGATCTGTTCGAGCACTCGGCCACC
ACATCGGTGCCCATTTTCAAGAAGCTATTCTTCAAGACTCCGGAAAGGGG
ATCCCGCACGGTGGTCTTCGCGGCCATTGATCCCTCCATCGAGGGTCAGG
GTGGTACTTACCTCTCCAACGGCGGAAAGGGTCCTTTCCATCCGGATGCC
AAGAAGCCGGCAAAGTGCGAGCAGCTTTTCCAGTTCTCCTGCGACCTGTT
GAAAATCCAGCAGTACGGAAATGGCGAATACTAAAAGCTTTCTAGACCAT

BS07752.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11200-RC 1068 CG11200-PC 1..1068 17..1084 5340 100 Plus
CG11200-RA 1068 CG11200-PA 1..1068 17..1084 5340 100 Plus
CG11200-RB 1068 CG11200-PB 1..1068 17..1084 5340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11200-RC 1335 CG11200-RC 153..1221 17..1085 5345 100 Plus
CG11200-RA 1447 CG11200-RA 265..1333 17..1085 5345 100 Plus
CG11200-RB 1688 CG11200-RB 506..1574 17..1085 5345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20304631..20305028 1085..688 1990 100 Minus
2R 25286936 2R 20305086..20305468 687..305 1915 100 Minus
2R 25286936 2R 20306415..20306595 197..17 905 100 Minus
2R 25286936 2R 20306243..20306352 306..197 550 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:46:44 has no hits.

BS07752.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:26 Download gff for BS07752.complete
Subject Subject Range Query Range Percent Splice Strand
CG11200-RA 1..1068 17..1084 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:14 Download gff for BS07752.complete
Subject Subject Range Query Range Percent Splice Strand
CG11200-RA 530..1610 11..1092 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:32 Download gff for BS07752.complete
Subject Subject Range Query Range Percent Splice Strand
CG11200-RB 511..1571 22..1082 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:26 Download gff for BS07752.complete
Subject Subject Range Query Range Percent Splice Strand
CG11200-RA 530..1610 11..1092 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:56 Download gff for BS07752.complete
Subject Subject Range Query Range Percent Splice Strand
CG11200-RB 511..1571 22..1082 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:56 Download gff for BS07752.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20304634..20305028 688..1082 100 <- Minus
2R 20305086..20305467 306..687 100 <- Minus
2R 20306244..20306351 198..305 100 <- Minus
2R 20306415..20306590 22..197 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:32 Download gff for BS07752.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16192139..16192533 688..1082 100 <- Minus
arm_2R 16192591..16192972 306..687 100 <- Minus
arm_2R 16193749..16193856 198..305 100 <- Minus
arm_2R 16193920..16194095 22..197 100   Minus

BS07752.pep Sequence

Translation from 16 to 1083

> BS07752.pep
MLGTLLWIFFVGLLLCAFLFSKTTKEFPKSWFEWKTEFRYQYLGIVGLVH
DAQYKARDRVALYKQPDRIAVITGGNRGIGLRIVEKLLACDMTVVMGVRD
PKIAETAVASIVDLNATKGKLICEQLDVGDLKSVKAFAQLIKERYSKVDL
LLNNAGIMFAPFKLTADGYESHFAINFLGHFLLTHLLLPQLRAAGKEGRN
SRIVNVSSCVNLIGRINYKDINGTKHYYPGTAYSQSKLAQILFTRHLQTL
LDAEKSHVQVNVVHPGIVDTDLFEHSATTSVPIFKKLFFKTPERGSRTVV
FAAIDPSIEGQGGTYLSNGGKGPFHPDAKKPAKCEQLFQFSCDLLKIQQY
GNGEY*

BS07752.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11200-PC 355 CG11200-PC 1..355 1..355 1848 100 Plus
CG11200-PA 355 CG11200-PA 1..355 1..355 1848 100 Plus
CG11200-PB 355 CG11200-PB 1..355 1..355 1848 100 Plus
CG3842-PD 406 CG3842-PD 75..351 68..345 463 40.8 Plus
CG3842-PC 406 CG3842-PC 75..351 68..345 463 40.8 Plus