Clone Sequence Records
BS07752.3prime Sequence
900 bp (813 high quality bases) assembled on 2006-01-06
> BS07752.3prime
ATGGTCTAGAAAGCTTTTAGTATTCGCCATTTCCGTACTGCTGGATTTTC
AACAGGTCGCAGGAGAACTGGAAAAGCTGCTCGCACTTTGCCGGCTTCTT
GGCATCCGGATGGAAAGGACCCTTTCCGCCGTTGGAGAGGTAAGTACCAC
CCTGACCCTCGATGGAGGGATCAATGGCCGCGAAGACCACCGTGCGGGAT
CCCCTTTCCGGAGTCTTGAAGAATAGCTTCTTGAAAATGGGCACCGATGT
GGTGGCCGAGTGCTCGAACAGATCCGTGTCCACAATGCCCGGATGCACCA
CATTGACCTGCACGTGCGACTTTTCTGCATCCAGCAGTGTCTGCAGATGG
CGGGTGAACAAGATCTGAGCAAGCTTTGACTGACTGTAGGCGGTTCCCGG
GTAATAGTGTTTTGTTCCGTTAATGTCCTTATAGTTGATGCGTCCAATGA
GATTCACGCAGGAGCTGACGTTCACGATCCTGGAGTTCCTTCCCTCCTTG
CCTGCCGCCCTCAATTGAGGCAGAAGCAGGTGGGTGAGCAGAAAGTGTCC
CAGGAAGTTGATGGCAAAGTGCGACTCGTAGCCATCGGCGGTTAGTTTGA
AGGGCGCAAACATGATGCCAGCATTGTTCAGCAACAAATCCACTTTTGAA
TACCGCTCCTTGATGAGCTGAGCAAATGCCTTTACGGATTTCAGATCCCC
AACATCCAGTTGCTCGCAGATGAGCTTGCCCTTGGTAGCATTCAAGTCGA
CTATCGATGCAACTGCGGTTTCGGCAATTTTGGGATCACGAACGCCCATG
ACGACAGTCATGTCGCAGGCCAGCAGCTTCTCCACGATCCGCAGCCCGAT
GCCGCGATTGCCTCCGGTGATGACAGCAATGCGGGTCGGTTGTTTATAAA
BS07752.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11200-PB | 1068 | CG11200-RB | 185..1068 | 900..17 | 4345 | 99.6 | Minus |
CG11200-PA | 1068 | CG11200-RA | 185..1068 | 900..17 | 4345 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11200-RC | 1335 | CG11200-RC | 337..1221 | 900..16 | 4380 | 99.7 | Minus |
CG11200-RA | 1447 | CG11200-RA | 449..1333 | 900..16 | 4380 | 99.7 | Minus |
CG11200-RB | 1688 | CG11200-RB | 690..1574 | 900..16 | 4380 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20304631..20305028 | 16..413 | 1990 | 100 | Plus |
2R | 25286936 | 2R | 20305086..20305468 | 414..796 | 1915 | 100 | Plus |
2R | 25286936 | 2R | 20306243..20306348 | 795..900 | 485 | 97.2 | Plus |
Blast to na_te.dros performed on 2015-02-08 15:02:36 has no hits.
BS07752.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:36 Download gff for
BS07752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11200-PB | 188..1068 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:12 Download gff for
BS07752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11200-PA | 188..1068 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:01:49 Download gff for
BS07752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11200-RB | 693..1581 | 9..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:41:10 Download gff for
BS07752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11200-RB | 693..1581 | 9..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:41:10 Download gff for
BS07752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20304624..20305028 | 9..413 | 99 | <- | Plus |
2R | 20305086..20305467 | 414..795 | 100 | <- | Plus |
2R | 20306244..20306345 | 796..897 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:01:49 Download gff for
BS07752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16193749..16193850 | 796..897 | 97 | | Plus |
arm_2R | 16192129..16192533 | 9..413 | 99 | <- | Plus |
arm_2R | 16192591..16192972 | 414..795 | 100 | <- | Plus |
BS07752.5prime Sequence
868 bp (773 high quality bases) assembled on 2006-01-06
> BS07752.5prime
GAAGTTATCAGTCGACATGTTGGGAACTTTGCTGTGGATTTTCTTCGTCG
GCCTGCTGCTGTGTGCGTTCCTCTTTTCGAAGACCACCAAGGAGTTCCCG
AAGTCCTGGTTCGAGTGGAAGACTGAGTTTCGGTATCAGTACCTGGGAAT
CGTTGGGCTCGTCCACGATGCCCAGTATAAGGCACGGGATCGAGTGGCAC
TTTATAAACAACCGGACCGCATTGCTGTCATCACCGGAGGCAATCGCGGC
ATCGGACTGCGGATCGTGGAGAAGCTGCTGGCCTGCGACATGACTGTCGT
CATGGGCGTTCGTGATCCCAAAATTGCCGAAACCGCAGTTGCATCGATAG
TCGACTTGAATGCTACCAAGGGCAAGCTCATCTGCGAGCAACTGGATGTT
GGGGATCTGAAATCCGTAAAGGCATTTGCTCAGCTCATCAAGGAGCGGTA
TTCAAAAGTGGATTTGTTGCTGAACAATGCTGGCATCATGTTTGCGCCCT
TCAAACTAACCGCCGATGGCTACGAGTCGCACTTTGCCATCAACTTCCTG
GGACACTTTCTGCTCACCCACCTGCTTCTGCCTCAATTGAGGGCGGCAGG
CAAGGAGGGAAGGAACTCCAGGATCGTGAACGTCAGCTCCTGCGTGAATC
TCATTGGACGCATCAACTATAAGGACATTAACGGAACAAAACACTATTAC
CCGGGAACCGCCTACAGTCAGTCAAAGCTTGCTCAGATCTTGTTCACCCG
CCATCTGCAGACACTGCTGGATGCAGAAAAGTCGCACGTGCAGGTCAATG
TGGTGCATCGGGGCATTGTGGACACGGATCTGTTCGAGCACTCGGCCACC
ACATCGGTGCCCATTTTC
BS07752.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11200-PB | 1068 | CG11200-RB | 1..852 | 17..868 | 4235 | 99.8 | Plus |
CG11200-PA | 1068 | CG11200-RA | 1..852 | 17..868 | 4235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:14:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11200-RC | 1335 | CG11200-RC | 153..1004 | 17..868 | 4245 | 99.9 | Plus |
CG11200-RA | 1447 | CG11200-RA | 265..1116 | 17..868 | 4245 | 99.9 | Plus |
CG11200-RB | 1688 | CG11200-RB | 506..1357 | 17..868 | 4245 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20305086..20305468 | 687..305 | 1915 | 100 | Minus |
2R | 25286936 | 2R | 20306415..20306595 | 197..17 | 905 | 100 | Minus |
2R | 25286936 | 2R | 20304848..20305028 | 868..688 | 890 | 99.4 | Minus |
2R | 25286936 | 2R | 20306243..20306352 | 306..197 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:14:44 has no hits.
BS07752.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:37 Download gff for
BS07752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11200-PB | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:14 Download gff for
BS07752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11200-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:22:03 Download gff for
BS07752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11200-RB | 501..1357 | 11..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:59 Download gff for
BS07752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11200-RB | 501..1357 | 11..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:59 Download gff for
BS07752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20306244..20306351 | 198..305 | 100 | <- | Minus |
2R | 20306415..20306600 | 11..197 | 98 | | Minus |
2R | 20304848..20305028 | 688..868 | 99 | <- | Minus |
2R | 20305086..20305467 | 306..687 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:22:03 Download gff for
BS07752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16192353..16192533 | 688..868 | 99 | <- | Minus |
arm_2R | 16192591..16192972 | 306..687 | 100 | <- | Minus |
arm_2R | 16193749..16193856 | 198..305 | 100 | <- | Minus |
arm_2R | 16193920..16194105 | 11..197 | 98 | | Minus |
BS07752.complete Sequence
1100 bp (1100 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635973
> BS07752.complete
GAAGTTATCAGTCGACATGTTGGGAACTTTGCTGTGGATTTTCTTCGTCG
GCCTGCTGCTGTGTGCGTTCCTCTTTTCGAAGACCACCAAGGAGTTCCCG
AAGTCCTGGTTCGAGTGGAAGACTGAGTTTCGGTATCAGTACCTGGGAAT
CGTTGGGCTCGTCCACGATGCCCAGTATAAGGCACGGGATCGAGTGGCAC
TTTATAAACAACCGGACCGCATTGCTGTCATCACCGGAGGCAATCGCGGC
ATCGGACTGCGGATCGTGGAGAAGCTGCTGGCCTGCGACATGACTGTCGT
CATGGGCGTTCGTGATCCCAAAATTGCCGAAACCGCAGTTGCATCGATAG
TCGACTTGAATGCTACCAAGGGCAAGCTCATCTGCGAGCAACTGGATGTT
GGGGATCTGAAATCCGTAAAGGCATTTGCTCAGCTCATCAAGGAGCGGTA
TTCAAAAGTGGATTTGTTGCTGAACAATGCTGGCATCATGTTTGCGCCCT
TCAAACTAACCGCCGATGGCTACGAGTCGCACTTTGCCATCAACTTCCTG
GGACACTTTCTGCTCACCCACCTGCTTCTGCCTCAATTGAGGGCGGCAGG
CAAGGAGGGAAGGAACTCCAGGATCGTGAACGTCAGCTCCTGCGTGAATC
TCATTGGACGCATCAACTATAAGGACATTAACGGAACAAAACACTATTAC
CCGGGAACCGCCTACAGTCAGTCAAAGCTTGCTCAGATCTTGTTCACCCG
CCATCTGCAGACACTGCTGGATGCAGAAAAGTCGCACGTGCAGGTCAATG
TGGTGCATCCGGGCATTGTGGACACGGATCTGTTCGAGCACTCGGCCACC
ACATCGGTGCCCATTTTCAAGAAGCTATTCTTCAAGACTCCGGAAAGGGG
ATCCCGCACGGTGGTCTTCGCGGCCATTGATCCCTCCATCGAGGGTCAGG
GTGGTACTTACCTCTCCAACGGCGGAAAGGGTCCTTTCCATCCGGATGCC
AAGAAGCCGGCAAAGTGCGAGCAGCTTTTCCAGTTCTCCTGCGACCTGTT
GAAAATCCAGCAGTACGGAAATGGCGAATACTAAAAGCTTTCTAGACCAT
BS07752.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11200-RC | 1068 | CG11200-PC | 1..1068 | 17..1084 | 5340 | 100 | Plus |
CG11200-RA | 1068 | CG11200-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
CG11200-RB | 1068 | CG11200-PB | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11200-RC | 1335 | CG11200-RC | 153..1221 | 17..1085 | 5345 | 100 | Plus |
CG11200-RA | 1447 | CG11200-RA | 265..1333 | 17..1085 | 5345 | 100 | Plus |
CG11200-RB | 1688 | CG11200-RB | 506..1574 | 17..1085 | 5345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20304631..20305028 | 1085..688 | 1990 | 100 | Minus |
2R | 25286936 | 2R | 20305086..20305468 | 687..305 | 1915 | 100 | Minus |
2R | 25286936 | 2R | 20306415..20306595 | 197..17 | 905 | 100 | Minus |
2R | 25286936 | 2R | 20306243..20306352 | 306..197 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:46:44 has no hits.
BS07752.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:26 Download gff for
BS07752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11200-RA | 1..1068 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:14 Download gff for
BS07752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11200-RA | 530..1610 | 11..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:32 Download gff for
BS07752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11200-RB | 511..1571 | 22..1082 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:26 Download gff for
BS07752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11200-RA | 530..1610 | 11..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:56 Download gff for
BS07752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11200-RB | 511..1571 | 22..1082 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:56 Download gff for
BS07752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20304634..20305028 | 688..1082 | 100 | <- | Minus |
2R | 20305086..20305467 | 306..687 | 100 | <- | Minus |
2R | 20306244..20306351 | 198..305 | 100 | <- | Minus |
2R | 20306415..20306590 | 22..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:32 Download gff for
BS07752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16192139..16192533 | 688..1082 | 100 | <- | Minus |
arm_2R | 16192591..16192972 | 306..687 | 100 | <- | Minus |
arm_2R | 16193749..16193856 | 198..305 | 100 | <- | Minus |
arm_2R | 16193920..16194095 | 22..197 | 100 | | Minus |
BS07752.pep Sequence
Translation from 16 to 1083
> BS07752.pep
MLGTLLWIFFVGLLLCAFLFSKTTKEFPKSWFEWKTEFRYQYLGIVGLVH
DAQYKARDRVALYKQPDRIAVITGGNRGIGLRIVEKLLACDMTVVMGVRD
PKIAETAVASIVDLNATKGKLICEQLDVGDLKSVKAFAQLIKERYSKVDL
LLNNAGIMFAPFKLTADGYESHFAINFLGHFLLTHLLLPQLRAAGKEGRN
SRIVNVSSCVNLIGRINYKDINGTKHYYPGTAYSQSKLAQILFTRHLQTL
LDAEKSHVQVNVVHPGIVDTDLFEHSATTSVPIFKKLFFKTPERGSRTVV
FAAIDPSIEGQGGTYLSNGGKGPFHPDAKKPAKCEQLFQFSCDLLKIQQY
GNGEY*
BS07752.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11200-PC | 355 | CG11200-PC | 1..355 | 1..355 | 1848 | 100 | Plus |
CG11200-PA | 355 | CG11200-PA | 1..355 | 1..355 | 1848 | 100 | Plus |
CG11200-PB | 355 | CG11200-PB | 1..355 | 1..355 | 1848 | 100 | Plus |
CG3842-PD | 406 | CG3842-PD | 75..351 | 68..345 | 463 | 40.8 | Plus |
CG3842-PC | 406 | CG3842-PC | 75..351 | 68..345 | 463 | 40.8 | Plus |