Clone BS07755 Report

Search the DGRC for BS07755

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG13458-RA
Protein status:BS07755.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07755.3prime Sequence

870 bp (754 high quality bases) assembled on 2006-01-06

> BS07755.3prime
ATGGTCTAGAAAGCTTTTAATCAACAACAAAACAGTAAAAGTTCTTAAAC
ATAAAAGACGCTTCATTATCTGATATAAAATTACGTTCTGGCTTTTCCGA
GGAAAACGGATTTACAGTTGGCGGCATTACGACATTTAAGTGTCGATTCG
ATTGGTTAATAAATTGAATCATATCCAAAGGGGCCTCGTATTTTGTATAG
GAAGTAACTACGATGGGGCAGTTGAGATTGAGTGCAGCTTGAATGGTATC
TGGCCAAGTATCCTCCAGAGCGAAACCAGTTGATCGGTACAGACCGCAGT
TAAAGAAGCAAATCAAATTCGGCTGAAGAAAGTGCGATTCTCTGCAGTAA
TCGTGATATAAACTATTCTCAAAATGATAGTTAACCGTTCTCTGGGCTTT
TCTGCAGAAACGGCAGCATTTGATTTTCTTTAGCTGTTCAAAGGATATAT
TATTAGGATTAAGTTCAGGTCCAACAAAGACCACATTCAGAGTTTTCACC
GCTGGCGTTATGTGGAGCAGGAAGAGTTCCCATTTCTGCAGCATATCCGC
CTCAAATTCGATCTCGGCTCCAATTAAGTGAAGAGTCATCTCCTCGCAGT
TTCTGAGGCGCTCGCAAAGTTTCAAGGCAAACCAGGCAGTTAATGGGCCA
GTGGACACCTGGGTAAGTGCTGCGTACTCACACTCATTGGTAACATTAAA
GCTTAGCTTCTTCATCATCTGCTTGGTGTTGGAGCAAGCCATGGGCAGCT
CTCTAAGAATCTTACTGGGCAGTGATGGCTCCATGCGGCCGAACTGTTCC
TGAAACATGATGAAGGCCTTGAAAATCTGATAGGCTCCACACCACTTGGC
GTGCTCCTTGCCTCGGTGCT

BS07755.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13458-PA 1905 CG13458-RA 1052..1905 870..17 4270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13458-RA 2188 CG13458-RA 1265..2118 870..17 4270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15116008..15116303 312..17 1480 100 Minus
3L 28110227 3L 15115507..15115783 696..420 1385 100 Minus
3L 28110227 3L 15115273..15115446 870..697 870 100 Minus
3L 28110227 3L 15115844..15115950 419..313 535 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:13:18 has no hits.

BS07755.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:42 Download gff for BS07755.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13458-PA 1052..1905 17..870 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:21 Download gff for BS07755.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13458-PA 1052..1905 17..870 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:35:32 Download gff for BS07755.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 1265..2126 9..870 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:18 Download gff for BS07755.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 1265..2126 9..870 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:18 Download gff for BS07755.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15116008..15116311 9..312 98   Minus
3L 15115273..15115446 697..870 100 -> Minus
3L 15115507..15115783 420..696 100 -> Minus
3L 15115844..15115950 313..419 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:35:32 Download gff for BS07755.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15108373..15108546 697..870 100 -> Minus
arm_3L 15108607..15108883 420..696 100 -> Minus
arm_3L 15108944..15109050 313..419 100 -> Minus
arm_3L 15109108..15109411 9..312 98   Minus

BS07755.5prime Sequence

847 bp (814 high quality bases) assembled on 2006-01-06

> BS07755.5prime
GAAGTTATCAGTCGACATGATTCAGTCGGGGGTCCACAAAAAGAAGCCAA
GGATTCGGAATCGCCAGCGCAACAAGATCAACCAGGTGCCACAGGATCAA
GGGGAATCTCCAGACGCAATTGCGTCTTCACTCAAAAGTAATGGCTCAAA
AGCGGCAAATGGTGTAGAAAGTAAACCTCCGGTGGAAAAGCCCTTACTTA
CAAGTGGAAATTCTCTGCTTGAATCATTATCAAAAATTGGTCAAGTGGAA
AATCCGCAAGAGAACGATACAATCCGGCTGATACAGCAACTGTTACGTAG
GAAATTATTGGCCAAAAATAGTGCTGTGCCATCCAGCGAAAATAAGCCAT
CAACTGATCCGGTCAAAATAGTTACCCAACCAAAGGAAATCAAAAGTGAA
GAAAAGAAACCAAAGATTTCGAGTACCTCGGTTACTCCAAAACTCAAAAC
AGAAGCCAAGGCATCTGGAATTTCAAAAGAAGAGGAAATAAATGATCTAC
TCAAATGCTTGGGCAGCAAACTGCCAAAGGGATCTGGTGAATCCCCAGCA
GCCGCGTTATTCAGCAATCTTGGAAAGCTTTTCAGCCAAGCGCCGCCCAG
CGATGTCGAGTCATCCGATGAGGAAGTGGAGGAGTATGTGGAGTACATCT
ATAAGCCAAGGCAATATTTTATGGCCTCACTGTGCAATTTCTGCAAGTCG
GATCTGTGCGGCCAGAATCGGATACCCTGCTCCCGCTGTGGACTGAGCTA
CTACTGCAGCAGTGGGCACATGAAAGACGACCAGGAGCACCGCCAGCTGT
GCTACGCCCCTGCGCAGACGGTGGACCGCAATGGTCACGAGATGTTC

BS07755.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13458-PA 1905 CG13458-RA 1..793 17..809 3965 100 Plus
CG13458-PA 1905 CG13458-RA 799..831 815..847 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13458-RA 2188 CG13458-RA 212..1044 15..847 4120 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15113768..15114284 15..531 2585 100 Plus
3L 28110227 3L 15114343..15114501 530..688 795 100 Plus
3L 28110227 3L 15114823..15114969 689..835 660 96.6 Plus
Blast to na_te.dros performed on 2015-02-11 23:55:38 has no hits.

BS07755.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:44 Download gff for BS07755.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13458-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:23 Download gff for BS07755.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13458-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:56:16 Download gff for BS07755.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 206..1044 9..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:37 Download gff for BS07755.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 206..1044 9..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:37 Download gff for BS07755.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15113762..15114283 9..530 99 -> Plus
3L 15114344..15114501 531..688 100 -> Plus
3L 15114823..15114967 689..833 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:56:16 Download gff for BS07755.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15106862..15107383 9..530 99 -> Plus
arm_3L 15107444..15107601 531..688 100 -> Plus
arm_3L 15107923..15108067 689..833 98 -> Plus

BS07755.complete Sequence

1937 bp assembled on 2008-01-03

GenBank Submission: FJ635974

> BS07755.complete
GAAGTTATCAGTCGACATGATTCAGTCGGGGGTCCACAAAAAGAAGCCAA
GGATTCGGAATCGCCAGCGCAACAAGATCAACCAGGTGCCACAGGATCAA
GGGGAATCTCCAGACGCAATTGCGTCTTCACTCAAAAGTAATGGCTCAAA
AGCGGCAAATGGTGTAGAAAGTAAACCTCCGGTGGAAAAGCCCTTACTTA
CAAGTGGAAATTCTCTGCTTGAATCATTATCAAAAATTGGTCAAGTGGAA
AATCCGCAAGAGAACGATACAATCCGGCTGATACAGCAACTGTTACGTAG
GAAATTATTGGCCAAAAATAGTGCTGTGCCATCCAGCGAAAATAAGCCAT
CAACTGATCCGGTCAAAATAGTTACCCAACCAAAGGAAATCAAAAGTGAA
GAAAAGAAACCAAAGATTTCGAGTACCTCGGTTACTCCAAAACTCAAAAC
AGAAGCCAAGGCATCTGGAATTTCAAAAGAAGAGGAAATAAATGATCTAC
TCAAATGCTTGGGCAGCAAACTGCCAAAGGGATCTGGTGAATCCCCAGCA
GCCGCGTTATTCAGCAATCTTGGAAAGCTTTTCAGCCAAGCGCCGCCCAG
CGATGTCGAGTCATCCGATGAGGAAGTGGAGGAGTATGTGGAGTACATCT
ATAAGCCAAGGCAATATTTTATGGCCTCACTGTGCAATTTCTGCAAGTCG
GATCTGTGCGGCCAGAATCGGATACCCTGCTCCCGCTGTGGACTGAGCTA
CTACTGCAGCAGTGGGCACATGAAAGACGACCAGGAGCACCGCCAGCTGT
GCTACGCCCTGCGCCAGACGGTGGACCGCAATGGTCACGAGATGTTCTAC
AAGTGCGGCGACTTCAGTGACGAACAGTTCCGTTCCTTCCGGATCGTGTG
CATTCGCCAGGTGGAGAAGGAGATGAATCGTCAGCTCAGCGCAACGGAGA
GAGAGTTGCTCCTATTTCCACTGATCTGCGCCGACTCAAAGTGCCGGGAG
CATCGCTTTAAACGTCTATCCATGTGCGGTGGATGTGGCGAGGTGGCTTT
CTGCAAGGATAAGCCGGAGCACCGAGGCAAGGAGCACGCCAAGTGGTGTG
GAGCCTATCAGATTTTCAAGGCCTTCATCATGTTTCAGGAACAGTTCGGC
CGCATGGAGCCATCACTGCCCAGTAAGATTCTTAGAGAGCTGCCCATGGC
TTGCTCCAACACCAAGCAGATGATGAAGAAGCTAAGCTTTAATGTTACCA
ATGAGTGTGAGTACGCAGCACTTACCCAGGTGTCCACTGGCCCATTAACT
GCCTGGTTTGCCTTGAAACTTTGCGAGCGCCTCAGAAACTGCGAGGAGAT
GACTCTTCACTTAATTGGAGCCGAGATCGAATTTGAGGCGGATATGCTGC
AGAAATGGGAACTCTTCCTGCTCCACATAACGCCAGCGGTGAAAACTCTG
AATGTGGTCTTTGTTGGACCTGAACTTAATCCTAATAATATATCCTTTGA
ACAGCTAAAGAAAATCAAATGCTGCCGTTTCTGCAGAAAAGCCCAGAGAA
CGGTTAACTATCATTTTGAGAATAGTTTATATCACGATTACTGCAGAGAA
TCGCACTTTCTTCAGCCGAATTTGATTTGCTTCTTTAACTGCGGTCTGTA
CCGATCAACTGGTTTCGCTCTGGAGGATACTTGGCCAGATACCATTCAAG
CTGCACTCAATCTCAACTGCCCCATCGTAGTTACTTCCTATACAAAATAC
GAGGCCCCTTTGGATATGATTCAATTTATTAACCAATCGAATCGACACTT
AAATGTCGTAATGCCGCCAACTGTAAATCCGTTTTCCTCGGAAAAGCCAG
AACGTAATTTTATATCAGATAATGAAGCGTCTTTTATGTTTAAGAACTTT
TACTGTTTTGTTGTTGATTAAAAGCTTTCTAGACCAT

BS07755.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13458-RA 1905 CG13458-PA 1..1905 17..1921 9525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13458-RA 2188 CG13458-RA 212..2118 15..1921 9535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15113768..15114284 15..531 2585 100 Plus
3L 28110227 3L 15115038..15115446 833..1241 2045 100 Plus
3L 28110227 3L 15116008..15116303 1626..1921 1480 100 Plus
3L 28110227 3L 15115507..15115783 1242..1518 1385 100 Plus
3L 28110227 3L 15114343..15114501 530..688 795 100 Plus
3L 28110227 3L 15114823..15114969 689..835 735 100 Plus
3L 28110227 3L 15115844..15115950 1519..1625 535 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:23:05 has no hits.

BS07755.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:07 Download gff for BS07755.complete
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 1..1905 17..1921 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:45 Download gff for BS07755.complete
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 214..2116 17..1919 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:13 Download gff for BS07755.complete
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 214..2116 17..1919 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:07 Download gff for BS07755.complete
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 206..2126 9..1929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:40 Download gff for BS07755.complete
Subject Subject Range Query Range Percent Splice Strand
CG13458-RA 214..2116 17..1919 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:40 Download gff for BS07755.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15115844..15115950 1519..1625 100 -> Plus
3L 15115507..15115783 1242..1518 100 -> Plus
3L 15116008..15116301 1626..1919 100   Plus
3L 15113770..15114283 17..530 100 -> Plus
3L 15114344..15114501 531..688 100 -> Plus
3L 15114823..15114967 689..833 100 -> Plus
3L 15115039..15115446 834..1241 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:13 Download gff for BS07755.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15108607..15108883 1242..1518 100 -> Plus
arm_3L 15108944..15109050 1519..1625 100 -> Plus
arm_3L 15106870..15107383 17..530 100 -> Plus
arm_3L 15107444..15107601 531..688 100 -> Plus
arm_3L 15107923..15108067 689..833 100 -> Plus
arm_3L 15108139..15108546 834..1241 100 -> Plus
arm_3L 15109108..15109401 1626..1919 100   Plus

BS07755.pep Sequence

Translation from 16 to 1920

> BS07755.pep
MIQSGVHKKKPRIRNRQRNKINQVPQDQGESPDAIASSLKSNGSKAANGV
ESKPPVEKPLLTSGNSLLESLSKIGQVENPQENDTIRLIQQLLRRKLLAK
NSAVPSSENKPSTDPVKIVTQPKEIKSEEKKPKISSTSVTPKLKTEAKAS
GISKEEEINDLLKCLGSKLPKGSGESPAAALFSNLGKLFSQAPPSDVESS
DEEVEEYVEYIYKPRQYFMASLCNFCKSDLCGQNRIPCSRCGLSYYCSSG
HMKDDQEHRQLCYALRQTVDRNGHEMFYKCGDFSDEQFRSFRIVCIRQVE
KEMNRQLSATERELLLFPLICADSKCREHRFKRLSMCGGCGEVAFCKDKP
EHRGKEHAKWCGAYQIFKAFIMFQEQFGRMEPSLPSKILRELPMACSNTK
QMMKKLSFNVTNECEYAALTQVSTGPLTAWFALKLCERLRNCEEMTLHLI
GAEIEFEADMLQKWELFLLHITPAVKTLNVVFVGPELNPNNISFEQLKKI
KCCRFCRKAQRTVNYHFENSLYHDYCRESHFLQPNLICFFNCGLYRSTGF
ALEDTWPDTIQAALNLNCPIVVTSYTKYEAPLDMIQFINQSNRHLNVVMP
PTVNPFSSEKPERNFISDNEASFMFKNFYCFVVD*

BS07755.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13458-PA 634 CG13458-PA 1..634 1..634 3364 100 Plus