Clone BS07758 Report

Search the DGRC for BS07758

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG8560-RA
Protein status:BS07758.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07758.3prime Sequence

907 bp (827 high quality bases) assembled on 2006-01-06

> BS07758.3prime
ATGGTCTAGAAAGCTTCTAGTACTTATCGGCAACCTTCTGGGCCATGGCC
TTGATGCCCACCCAGGTCTCGGAAACGAAGCCCTCGATCTGGCTGGTGCT
GGGATTGAAGCCAGTACCGCCGGCCGGCAGTTCCATGGTAATCGACACCG
GGAAGTTGGCCACTCCGAAGGCATAGTCGTCACTGCCGCCGGCAGCAGCG
TACAGAACGTTGGTGGAACTGCCCACGGTATACTTCGTTCCGGTCGCACT
CTTGATGGCATCCGCTCCACCCTGGGCCACCTCATCGTTGTCGCGCCAGC
TGCTGGGCAGAGCAGACGTCCAGCCCCAAGGATACAGCAGGTAGTTGCCA
TAGGAGTGGAGGGTCAGGTAGAACTTGCCACGTCCGGTCAGACTGAGCAG
GATATCGCGAATCAACTGAGTCTCCGGCTCGGAGAAGGCCGTCTCACCCT
TGAAGGTATCAGAGCAGGAGTAGCTGGAGGCACCAACCTCTCCCCAATGG
AAATCGAAGTTGCGATTGGCATCGGTTCCATAGCAGGCACTGCTGATTGG
CTTTCTGGTCTTGCGCCACATACGGGTGGTGGTGTGAGAGTATTCATAGC
CATCGGGATTCACCACCGGCAGGATAACCCAGTCAAAGTCCTTCAGCAGT
TCCGAGTTGGCAGCAAAGTTCTCCACCAGCTGATGGATCACATACAGAGC
TCCAGCATGGGCGATCCATTCGCGAGCATGGATACCAGCATCCAGGAAGA
CAACATTCTTGCCGGTCTTACCATCGCCATTGGTGATAGTGATGGTCTTG
ATGTCACGATTCTCATACGACTTGCCAGCCACCTGGACGGATACACGGCT
GGGATAGGCAGCAGCCAGTTCATCCAGGTAGGCATTGATCTCGGCATGAC
GATGGAA

BS07758.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-PA 1257 CG8560-RA 367..1257 907..17 4455 100 Minus
CG8562-PA 1275 CG8562-RA 922..977 370..315 155 91 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-RB 1334 CG8560-RB 413..1303 907..17 4455 100 Minus
CG8560-RA 1566 CG8560-RA 645..1535 907..17 4455 100 Minus
CG8562-RA 1483 CG8562-RA 501..703 796..594 310 77.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7402728..7403320 315..907 2965 100 Plus
3L 28110227 3L 7402363..7402660 17..314 1490 100 Plus
3L 28110227 3L 7398870..7399072 796..594 310 76.8 Minus
3L 28110227 3L 7399311..7399366 370..315 205 91.1 Minus
Blast to na_te.dros performed on 2015-02-11 16:08:06 has no hits.

BS07758.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:49 Download gff for BS07758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8560-PA 369..1257 17..905 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:29 Download gff for BS07758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8560-PA 369..1257 17..905 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:39:52 Download gff for BS07758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 645..1537 13..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:28 Download gff for BS07758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 645..1537 13..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:28 Download gff for BS07758.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7402359..7402660 13..314 99 <- Plus
3L 7402728..7403320 315..907 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:39:52 Download gff for BS07758.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7395459..7395760 13..314 99 <- Plus
arm_3L 7395828..7396420 315..907 100   Plus

BS07758.5prime Sequence

867 bp (797 high quality bases) assembled on 2006-01-06

> BS07758.5prime
GAAGTTATCAGTCGACATGTTGAAACTATTTGCTGTGGTGCTCCTGCTGG
CCAGCGTGGCCTTGGCGGTGGAAAACTACGATGGCTACAAGATCTACGAC
ATCAATGCTCGCAACGCTTTTGAGAAGCAGCTGCTGCTGCGTTTGTCCGG
AAATGAGGCATACGACTTCTTTGACCTGCCCCGTTCCCTGGACGCGTCCA
GTCGCGTGATGGTCAAGCCCGAGGATCAGGAGGGATTCGAGCACCTGCTG
GAGAAGTACGGCGTAAACTACTCGGTGATCAACGAGAATTTCGGTGAGTC
GCTGCGTCAGGAGCGCGATGAGAACCAGAACCAGAGGTTGATGAACCTGC
GATCCGCTGAACGCAGCGTTAGCTTCAAGGCGTTCCATCGTCATGCCGAG
ATCAATGCCTACCTGGATGAACTGGCTGCTGCCTATCCCAGCCGTGTATC
CGTCCAGGTGGCTGGCAAGTCGTATGAGAATCGTGACATCAAGACCATCA
CTATCACCAATGGCGATGGTAAGACCGGCAAGAATGTTGTCTTCCTGGAT
GCTGGTATCCATGCTCGCGAATGGATCGCCCATGCTGGAGCTCTGTATGT
GATCCATCAGCTGGTGGAGAACTTTGCTGCCAACTCGGAACTGCTGAAGG
ACTTTGACTGGGTTATCCTGCCGGTGGTGAATCCCGATGGCTATGAATAC
TCTCACACCACCACCCGTATGTGGCGCAAGACCAGAAAGCCAATCAGCAG
TGCCTGCTATGGAACCGATGCCAATCGCAACTTCGATTTCCATTGGGGAG
AGGTTGGTGCCTCCAGCTACTCCTGCTCTGATACCTTCAAGGGTGAGACG
GCCTTCTCCGAGCCGGA

BS07758.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-PA 1257 CG8560-RA 1..851 17..867 4255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-RB 1334 CG8560-RB 47..897 17..867 4255 100 Plus
CG8560-RA 1566 CG8560-RA 279..1129 17..867 4255 100 Plus
CG8562-RA 1483 CG8562-RA 501..703 494..696 310 77.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7402836..7403619 867..84 3920 100 Minus
3L 28110227 3L 7403836..7403903 84..17 340 100 Minus
3L 28110227 3L 7398870..7399072 494..696 310 76.8 Plus
Blast to na_te.dros performed on 2015-02-11 13:05:40 has no hits.

BS07758.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:50 Download gff for BS07758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8560-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:31 Download gff for BS07758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8560-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:29:03 Download gff for BS07758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 279..1128 17..866 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:34:24 Download gff for BS07758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 279..1128 17..866 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:24 Download gff for BS07758.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7402837..7403618 85..866 100 <- Minus
3L 7403836..7403903 17..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:29:03 Download gff for BS07758.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7395937..7396718 85..866 100 <- Minus
arm_3L 7396936..7397003 17..84 100   Minus

BS07758.complete Sequence

1289 bp (1289 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ638807

> BS07758.complete
GAAGTTATCAGTCGACATGTTGAAACTATTTGCTGTGGTGCTCCTGCTGG
CCAGCGTGGCCTTGGCGGTGGAAAACTACGATGGCTACAAGATCTACGAC
ATCAATGCTCGCAACGCTTTTGAGAAGCAGCTGCTGCTGCGTTTGTCCGG
AAATGAGGCATACGACTTCTTTGACCTGCCCCGTTCCCTGGACGCGTCCA
GTCGCGTGATGGTCAAGCCCGAGGATCAGGAGGGATTCGAGCACCTGCTG
GAGAAGTACGGCGTAAACTACTCGGTGATCAACGAGAATTTCGGTGAGTC
GCTGCGTCAGGAGCGCGATGAGAACCAGAACCAGAGGTTGATGAACCTGC
GATCCGCTGAACGCAGCGTTAGCTTCAAGGCGTTCCATCGTCATGCCGAG
ATCAATGCCTACCTGGATGAACTGGCTGCTGCCTATCCCAGCCGTGTATC
CGTCCAGGTGGCTGGCAAGTCGTATGAGAATCGTGACATCAAGACCATCA
CTATCACCAATGGCGATGGTAAGACCGGCAAGAATGTTGTCTTCCTGGAT
GCTGGTATCCATGCTCGCGAATGGATCGCCCATGCTGGAGCTCTGTATGT
GATCCATCAGCTGGTGGAGAACTTTGCTGCCAACTCGGAACTGCTGAAGG
ACTTTGACTGGGTTATCCTGCCGGTGGTGAATCCCGATGGCTATGAATAC
TCTCACACCACCACCCGTATGTGGCGCAAGACCAGAAAGCCAATCAGCAG
TGCCTGCTATGGAACCGATGCCAATCGCAACTTCGATTTCCATTGGGGAG
AGGTTGGTGCCTCCAGCTACTCCTGCTCTGATACCTTCAAGGGTGAGACG
GCCTTCTCCGAGCCGGAGACTCAGTTGATTCGCGATATCCTGCTCAGTCT
GACCGGACGTGGCAAGTTCTACCTGACCCTCCACTCCTATGGCAACTACC
TGCTGTATCCTTGGGGCTGGACGTCTGCTCTGCCCAGCAGCTGGCGCGAC
AACGATGAGGTGGCCCAGGGTGGAGCGGATGCCATCAAGAGTGCGACCGG
AACGAAGTATACCGTGGGCAGTTCCACCAACGTTCTGTACGCTGCTGCCG
GCGGCAGTGACGACTATGCCTTCGGAGTGGCCAACTTCCCGGTGTCGATT
ACCATGGAACTGCCGGCCGGCGGTACTGGCTTCAATCCCAGCACCAGCCA
GATCGAGGGCTTCGTTTCCGAGACCTGGGTGGGCATCAAGGCCATGGCCC
AGAAGGTTGCCGATAAGTACTAGAAGCTTTCTAGACCAT

BS07758.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-RB 1257 CG8560-PB 1..1257 17..1273 6285 100 Plus
CG8560-RA 1257 CG8560-PA 1..1257 17..1273 6285 100 Plus
CG8562-RA 1275 CG8562-PA 481..683 494..696 310 76.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-RB 1334 CG8560-RB 47..1303 17..1273 6285 100 Plus
CG8560-RA 1566 CG8560-RA 279..1535 17..1273 6285 100 Plus
CG8562-RA 1483 CG8562-RA 501..703 494..696 310 76.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7402728..7403619 975..84 4460 100 Minus
3L 28110227 3L 7402363..7402660 1273..976 1490 100 Minus
3L 28110227 3L 7403836..7403903 84..17 340 100 Minus
3L 28110227 3L 7398870..7399072 494..696 310 76.8 Plus
3L 28110227 3L 7399311..7399366 920..975 205 91.1 Plus
Blast to na_te.dros performed on 2014-11-27 14:38:04 has no hits.

BS07758.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:27 Download gff for BS07758.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 1..1257 17..1273 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:16 Download gff for BS07758.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 279..1537 17..1277 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:11 Download gff for BS07758.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 284..1535 22..1273 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:27 Download gff for BS07758.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 279..1537 17..1277 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:32 Download gff for BS07758.complete
Subject Subject Range Query Range Percent Splice Strand
CG8560-RA 284..1535 22..1273 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:32 Download gff for BS07758.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7402363..7402660 976..1273 100 <- Minus
3L 7402728..7403618 85..975 100 <- Minus
3L 7403836..7403898 22..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:11 Download gff for BS07758.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7395463..7395760 976..1273 100 <- Minus
arm_3L 7395828..7396718 85..975 100 <- Minus
arm_3L 7396936..7396998 22..84 100   Minus

BS07758.pep Sequence

Translation from 16 to 1272

> BS07758.pep
MLKLFAVVLLLASVALAVENYDGYKIYDINARNAFEKQLLLRLSGNEAYD
FFDLPRSLDASSRVMVKPEDQEGFEHLLEKYGVNYSVINENFGESLRQER
DENQNQRLMNLRSAERSVSFKAFHRHAEINAYLDELAAAYPSRVSVQVAG
KSYENRDIKTITITNGDGKTGKNVVFLDAGIHAREWIAHAGALYVIHQLV
ENFAANSELLKDFDWVILPVVNPDGYEYSHTTTRMWRKTRKPISSACYGT
DANRNFDFHWGEVGASSYSCSDTFKGETAFSEPETQLIRDILLSLTGRGK
FYLTLHSYGNYLLYPWGWTSALPSSWRDNDEVAQGGADAIKSATGTKYTV
GSSTNVLYAAAGGSDDYAFGVANFPVSITMELPAGGTGFNPSTSQIEGFV
SETWVGIKAMAQKVADKY*

BS07758.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8560-PB 418 CG8560-PB 1..418 1..418 2183 100 Plus
CG8560-PA 418 CG8560-PA 1..418 1..418 2183 100 Plus
CG8562-PA 424 CG8562-PA 9..424 7..418 1154 55 Plus
CG18417-PA 427 CG18417-PA 6..424 7..418 1032 49.3 Plus
CG32379-PB 344 CG32379-PB 1..342 78..418 857 48.3 Plus