Clone Sequence Records
BS07758.3prime Sequence
907 bp (827 high quality bases) assembled on 2006-01-06
> BS07758.3prime
ATGGTCTAGAAAGCTTCTAGTACTTATCGGCAACCTTCTGGGCCATGGCC
TTGATGCCCACCCAGGTCTCGGAAACGAAGCCCTCGATCTGGCTGGTGCT
GGGATTGAAGCCAGTACCGCCGGCCGGCAGTTCCATGGTAATCGACACCG
GGAAGTTGGCCACTCCGAAGGCATAGTCGTCACTGCCGCCGGCAGCAGCG
TACAGAACGTTGGTGGAACTGCCCACGGTATACTTCGTTCCGGTCGCACT
CTTGATGGCATCCGCTCCACCCTGGGCCACCTCATCGTTGTCGCGCCAGC
TGCTGGGCAGAGCAGACGTCCAGCCCCAAGGATACAGCAGGTAGTTGCCA
TAGGAGTGGAGGGTCAGGTAGAACTTGCCACGTCCGGTCAGACTGAGCAG
GATATCGCGAATCAACTGAGTCTCCGGCTCGGAGAAGGCCGTCTCACCCT
TGAAGGTATCAGAGCAGGAGTAGCTGGAGGCACCAACCTCTCCCCAATGG
AAATCGAAGTTGCGATTGGCATCGGTTCCATAGCAGGCACTGCTGATTGG
CTTTCTGGTCTTGCGCCACATACGGGTGGTGGTGTGAGAGTATTCATAGC
CATCGGGATTCACCACCGGCAGGATAACCCAGTCAAAGTCCTTCAGCAGT
TCCGAGTTGGCAGCAAAGTTCTCCACCAGCTGATGGATCACATACAGAGC
TCCAGCATGGGCGATCCATTCGCGAGCATGGATACCAGCATCCAGGAAGA
CAACATTCTTGCCGGTCTTACCATCGCCATTGGTGATAGTGATGGTCTTG
ATGTCACGATTCTCATACGACTTGCCAGCCACCTGGACGGATACACGGCT
GGGATAGGCAGCAGCCAGTTCATCCAGGTAGGCATTGATCTCGGCATGAC
GATGGAA
BS07758.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8560-PA | 1257 | CG8560-RA | 367..1257 | 907..17 | 4455 | 100 | Minus |
CG8562-PA | 1275 | CG8562-RA | 922..977 | 370..315 | 155 | 91 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8560-RB | 1334 | CG8560-RB | 413..1303 | 907..17 | 4455 | 100 | Minus |
CG8560-RA | 1566 | CG8560-RA | 645..1535 | 907..17 | 4455 | 100 | Minus |
CG8562-RA | 1483 | CG8562-RA | 501..703 | 796..594 | 310 | 77.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7402728..7403320 | 315..907 | 2965 | 100 | Plus |
3L | 28110227 | 3L | 7402363..7402660 | 17..314 | 1490 | 100 | Plus |
3L | 28110227 | 3L | 7398870..7399072 | 796..594 | 310 | 76.8 | Minus |
3L | 28110227 | 3L | 7399311..7399366 | 370..315 | 205 | 91.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:08:06 has no hits.
BS07758.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:49 Download gff for
BS07758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8560-PA | 369..1257 | 17..905 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:29 Download gff for
BS07758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8560-PA | 369..1257 | 17..905 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:39:52 Download gff for
BS07758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8560-RA | 645..1537 | 13..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:28 Download gff for
BS07758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8560-RA | 645..1537 | 13..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:28 Download gff for
BS07758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7402359..7402660 | 13..314 | 99 | <- | Plus |
3L | 7402728..7403320 | 315..907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:39:52 Download gff for
BS07758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7395459..7395760 | 13..314 | 99 | <- | Plus |
arm_3L | 7395828..7396420 | 315..907 | 100 | | Plus |
BS07758.5prime Sequence
867 bp (797 high quality bases) assembled on 2006-01-06
> BS07758.5prime
GAAGTTATCAGTCGACATGTTGAAACTATTTGCTGTGGTGCTCCTGCTGG
CCAGCGTGGCCTTGGCGGTGGAAAACTACGATGGCTACAAGATCTACGAC
ATCAATGCTCGCAACGCTTTTGAGAAGCAGCTGCTGCTGCGTTTGTCCGG
AAATGAGGCATACGACTTCTTTGACCTGCCCCGTTCCCTGGACGCGTCCA
GTCGCGTGATGGTCAAGCCCGAGGATCAGGAGGGATTCGAGCACCTGCTG
GAGAAGTACGGCGTAAACTACTCGGTGATCAACGAGAATTTCGGTGAGTC
GCTGCGTCAGGAGCGCGATGAGAACCAGAACCAGAGGTTGATGAACCTGC
GATCCGCTGAACGCAGCGTTAGCTTCAAGGCGTTCCATCGTCATGCCGAG
ATCAATGCCTACCTGGATGAACTGGCTGCTGCCTATCCCAGCCGTGTATC
CGTCCAGGTGGCTGGCAAGTCGTATGAGAATCGTGACATCAAGACCATCA
CTATCACCAATGGCGATGGTAAGACCGGCAAGAATGTTGTCTTCCTGGAT
GCTGGTATCCATGCTCGCGAATGGATCGCCCATGCTGGAGCTCTGTATGT
GATCCATCAGCTGGTGGAGAACTTTGCTGCCAACTCGGAACTGCTGAAGG
ACTTTGACTGGGTTATCCTGCCGGTGGTGAATCCCGATGGCTATGAATAC
TCTCACACCACCACCCGTATGTGGCGCAAGACCAGAAAGCCAATCAGCAG
TGCCTGCTATGGAACCGATGCCAATCGCAACTTCGATTTCCATTGGGGAG
AGGTTGGTGCCTCCAGCTACTCCTGCTCTGATACCTTCAAGGGTGAGACG
GCCTTCTCCGAGCCGGA
BS07758.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8560-PA | 1257 | CG8560-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8560-RB | 1334 | CG8560-RB | 47..897 | 17..867 | 4255 | 100 | Plus |
CG8560-RA | 1566 | CG8560-RA | 279..1129 | 17..867 | 4255 | 100 | Plus |
CG8562-RA | 1483 | CG8562-RA | 501..703 | 494..696 | 310 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:05:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7402836..7403619 | 867..84 | 3920 | 100 | Minus |
3L | 28110227 | 3L | 7403836..7403903 | 84..17 | 340 | 100 | Minus |
3L | 28110227 | 3L | 7398870..7399072 | 494..696 | 310 | 76.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:05:40 has no hits.
BS07758.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:22:50 Download gff for
BS07758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8560-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:31 Download gff for
BS07758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8560-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:29:03 Download gff for
BS07758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8560-RA | 279..1128 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:34:24 Download gff for
BS07758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8560-RA | 279..1128 | 17..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:24 Download gff for
BS07758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7402837..7403618 | 85..866 | 100 | <- | Minus |
3L | 7403836..7403903 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:29:03 Download gff for
BS07758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7395937..7396718 | 85..866 | 100 | <- | Minus |
arm_3L | 7396936..7397003 | 17..84 | 100 | | Minus |
BS07758.complete Sequence
1289 bp (1289 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ638807
> BS07758.complete
GAAGTTATCAGTCGACATGTTGAAACTATTTGCTGTGGTGCTCCTGCTGG
CCAGCGTGGCCTTGGCGGTGGAAAACTACGATGGCTACAAGATCTACGAC
ATCAATGCTCGCAACGCTTTTGAGAAGCAGCTGCTGCTGCGTTTGTCCGG
AAATGAGGCATACGACTTCTTTGACCTGCCCCGTTCCCTGGACGCGTCCA
GTCGCGTGATGGTCAAGCCCGAGGATCAGGAGGGATTCGAGCACCTGCTG
GAGAAGTACGGCGTAAACTACTCGGTGATCAACGAGAATTTCGGTGAGTC
GCTGCGTCAGGAGCGCGATGAGAACCAGAACCAGAGGTTGATGAACCTGC
GATCCGCTGAACGCAGCGTTAGCTTCAAGGCGTTCCATCGTCATGCCGAG
ATCAATGCCTACCTGGATGAACTGGCTGCTGCCTATCCCAGCCGTGTATC
CGTCCAGGTGGCTGGCAAGTCGTATGAGAATCGTGACATCAAGACCATCA
CTATCACCAATGGCGATGGTAAGACCGGCAAGAATGTTGTCTTCCTGGAT
GCTGGTATCCATGCTCGCGAATGGATCGCCCATGCTGGAGCTCTGTATGT
GATCCATCAGCTGGTGGAGAACTTTGCTGCCAACTCGGAACTGCTGAAGG
ACTTTGACTGGGTTATCCTGCCGGTGGTGAATCCCGATGGCTATGAATAC
TCTCACACCACCACCCGTATGTGGCGCAAGACCAGAAAGCCAATCAGCAG
TGCCTGCTATGGAACCGATGCCAATCGCAACTTCGATTTCCATTGGGGAG
AGGTTGGTGCCTCCAGCTACTCCTGCTCTGATACCTTCAAGGGTGAGACG
GCCTTCTCCGAGCCGGAGACTCAGTTGATTCGCGATATCCTGCTCAGTCT
GACCGGACGTGGCAAGTTCTACCTGACCCTCCACTCCTATGGCAACTACC
TGCTGTATCCTTGGGGCTGGACGTCTGCTCTGCCCAGCAGCTGGCGCGAC
AACGATGAGGTGGCCCAGGGTGGAGCGGATGCCATCAAGAGTGCGACCGG
AACGAAGTATACCGTGGGCAGTTCCACCAACGTTCTGTACGCTGCTGCCG
GCGGCAGTGACGACTATGCCTTCGGAGTGGCCAACTTCCCGGTGTCGATT
ACCATGGAACTGCCGGCCGGCGGTACTGGCTTCAATCCCAGCACCAGCCA
GATCGAGGGCTTCGTTTCCGAGACCTGGGTGGGCATCAAGGCCATGGCCC
AGAAGGTTGCCGATAAGTACTAGAAGCTTTCTAGACCAT
BS07758.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8560-RB | 1257 | CG8560-PB | 1..1257 | 17..1273 | 6285 | 100 | Plus |
CG8560-RA | 1257 | CG8560-PA | 1..1257 | 17..1273 | 6285 | 100 | Plus |
CG8562-RA | 1275 | CG8562-PA | 481..683 | 494..696 | 310 | 76.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8560-RB | 1334 | CG8560-RB | 47..1303 | 17..1273 | 6285 | 100 | Plus |
CG8560-RA | 1566 | CG8560-RA | 279..1535 | 17..1273 | 6285 | 100 | Plus |
CG8562-RA | 1483 | CG8562-RA | 501..703 | 494..696 | 310 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7402728..7403619 | 975..84 | 4460 | 100 | Minus |
3L | 28110227 | 3L | 7402363..7402660 | 1273..976 | 1490 | 100 | Minus |
3L | 28110227 | 3L | 7403836..7403903 | 84..17 | 340 | 100 | Minus |
3L | 28110227 | 3L | 7398870..7399072 | 494..696 | 310 | 76.8 | Plus |
3L | 28110227 | 3L | 7399311..7399366 | 920..975 | 205 | 91.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:38:04 has no hits.
BS07758.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:27 Download gff for
BS07758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8560-RA | 1..1257 | 17..1273 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:16 Download gff for
BS07758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8560-RA | 279..1537 | 17..1277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:11 Download gff for
BS07758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8560-RA | 284..1535 | 22..1273 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:27 Download gff for
BS07758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8560-RA | 279..1537 | 17..1277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:32 Download gff for
BS07758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8560-RA | 284..1535 | 22..1273 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:32 Download gff for
BS07758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7402363..7402660 | 976..1273 | 100 | <- | Minus |
3L | 7402728..7403618 | 85..975 | 100 | <- | Minus |
3L | 7403836..7403898 | 22..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:11 Download gff for
BS07758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7395463..7395760 | 976..1273 | 100 | <- | Minus |
arm_3L | 7395828..7396718 | 85..975 | 100 | <- | Minus |
arm_3L | 7396936..7396998 | 22..84 | 100 | | Minus |
BS07758.pep Sequence
Translation from 16 to 1272
> BS07758.pep
MLKLFAVVLLLASVALAVENYDGYKIYDINARNAFEKQLLLRLSGNEAYD
FFDLPRSLDASSRVMVKPEDQEGFEHLLEKYGVNYSVINENFGESLRQER
DENQNQRLMNLRSAERSVSFKAFHRHAEINAYLDELAAAYPSRVSVQVAG
KSYENRDIKTITITNGDGKTGKNVVFLDAGIHAREWIAHAGALYVIHQLV
ENFAANSELLKDFDWVILPVVNPDGYEYSHTTTRMWRKTRKPISSACYGT
DANRNFDFHWGEVGASSYSCSDTFKGETAFSEPETQLIRDILLSLTGRGK
FYLTLHSYGNYLLYPWGWTSALPSSWRDNDEVAQGGADAIKSATGTKYTV
GSSTNVLYAAAGGSDDYAFGVANFPVSITMELPAGGTGFNPSTSQIEGFV
SETWVGIKAMAQKVADKY*
BS07758.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8560-PB | 418 | CG8560-PB | 1..418 | 1..418 | 2183 | 100 | Plus |
CG8560-PA | 418 | CG8560-PA | 1..418 | 1..418 | 2183 | 100 | Plus |
CG8562-PA | 424 | CG8562-PA | 9..424 | 7..418 | 1154 | 55 | Plus |
CG18417-PA | 427 | CG18417-PA | 6..424 | 7..418 | 1032 | 49.3 | Plus |
CG32379-PB | 344 | CG32379-PB | 1..342 | 78..418 | 857 | 48.3 | Plus |