Clone Sequence Records
BS07764.3prime Sequence
916 bp (819 high quality bases) assembled on 2006-01-06
> BS07764.3prime
ATGGTCTAGAAAGCTTTTACTTCGGTTGCAGCATTTCGCTGATCCTGCGC
AGGGTCTCCTCTCGATCTCGATGCATCAGTTCCGATACTTGTTCCAAAAA
TTGATGCTGCTGCTCGCGTTGCTGCCGCAAGAAGCTTTCGTTGGTAGTTT
TGATCTGCGCAAGCAGCTGCTTTTGACCTTCTATGATTGCAGTGAGTGCT
TCAATCGGCGTTGGTTCAGCCTCCATCTCGATGGCGTCCACGTAGTCCTC
GCTATCGGCTGCCGCTCTTAGGAGATCGCAGGTGGAGCTGGAGTTGTCGC
TGTCACTTTCCAGCGGAACGCTTGGTTTGCCTGGCGGCTTGAGAAAGGAA
GGCTTGCTGATGCGAATGAGCCTGCTGATGGCACTTTCTCTGTTCTCCCG
CGGCGCCTGAATCAGTTCATCGAAAAGCTCAAAGTGGCGAGGCAGAATGC
GTACATTATCTAGCCCGTGCTCCTTGGCCTCTCGATGACGCTTGCAGAGC
AGCCTTAGTTTATTGCGCAGCTGGTGTGGCGTGCGTTTGATGTCCTGCTT
AGCCAGGATGTTGGAAATGTGCACCAGGGTCTGGAAGTTGCGCTTCCTTG
AGCCATCCAAGGCGCGAAAGAAACCATTGTCCCGAATGATGAGTAGAAAC
GAATCAACCTCTTCGTCTGTCCAAAAGTGCGCTCCGCTTCTCTGTGATGC
ATCACCCTCTTCCTCGTCACTGTCATTGAAATCACTATCGCTTGCGCTGC
TCAGATGGGCTTCCGCTTCAGCATCTGCGGCCGCCTCCTCTTCGGTGGGA
TCCAGGACCAGTCGCATCGCCTCAAAATGCTCGAACGTTTTCCCCGTGCC
GTTCTTGACCTTGTTGTACAATCGCCGCAGCTGCTGGAACTTGATGCGCA
GCTTCTCAGCACCCTT
BS07764.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10494-PB | 1335 | CG10494-RB | 436..1335 | 916..17 | 4500 | 100 | Minus |
CG10494-PA | 1572 | CG10494-RA | 673..1572 | 916..17 | 4500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:01:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10494-RA | 1794 | CG10494-RA | 793..1692 | 916..17 | 4500 | 100 | Minus |
CG10494-RB | 2160 | CG10494-RB | 778..1677 | 916..17 | 4500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21517257..21517923 | 17..683 | 3335 | 100 | Plus |
2R | 25286936 | 2R | 21517981..21518215 | 682..916 | 1175 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:01:22 has no hits.
BS07764.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:02 Download gff for
BS07764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-PA | 673..1572 | 17..916 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:48 Download gff for
BS07764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-PA | 673..1572 | 17..916 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:51:26 Download gff for
BS07764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RB | 778..1677 | 17..916 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:44:04 Download gff for
BS07764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RB | 778..1677 | 17..916 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:44:04 Download gff for
BS07764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21517981..21518215 | 682..916 | 100 | | Plus |
2R | 21517257..21517921 | 17..681 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:51:26 Download gff for
BS07764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17404762..17405426 | 17..681 | 100 | <- | Plus |
arm_2R | 17405486..17405720 | 682..916 | 100 | | Plus |
BS07764.5prime Sequence
947 bp (815 high quality bases) assembled on 2006-01-06
> BS07764.5prime
GAAGTTATCAGTCGACATGGTGTCCAGAGAAATGGCCCGGCGGAACTGCC
CCAAGAGTCCAAAGCATCTGAGAGTCAAGTTCCATCAGATGCGGCGTCAG
TATGCGAGAGCTCGGAATGGCGGCGAACCATTCGAGCACTTTGAGGCGGT
GCACGAGTTGATGCAGGGAGAAGATGTATCTGATCTGGATGAAGAGGCGC
TAGAGAGTGACAGCGATATGGAGGCCGACGAGGACCAGTCCGGCATGATC
TCAGAAACCGAAGGGGACGATGCTTTGGATGCCTCAGGATCTTCAGTTAA
CATCGTCGCCCGCTGCAAGTGGGCAGAGGGCGAAGTGGACCTCCTCCTAG
ACCTGATCCACACACTTGGACTGCGAGCAGCTTTGCTGCAAAAGCGCAAT
GCCAAGGTCTTCAAGCTGCTGTCCAAGGAGATGGCAAAACGCAACTGCCA
CAAGGGTGCTGAGAAGCTGCGCATCAAGTTCCAGCAGCTGCGGCGATTGT
ACAACAAGGTCAAGAACGGCACGGGGAAAACGTTCGAGCATTTTGAGGCG
ATGCGACTGGTCCTGGATCCCACCGAAGAGGAGGCGGCCGCAGATGCTGA
AGCGGAAGCCCATCTGAGCAGCGCAAGCGATAGTGATTTCAATGACAGTG
ACGAGGAAGAGGGTGATGCATCACAGAGAAGCGGAGCGCACTTTTGGACA
GACGAAGAGGTTGATTCGTTTCTACTCATCATTCGGGACAATGGTTTCTT
TCGCGCCTTGGATGGCTCAAGGAAGCGCAACTTCCAGACCCTGGTGCACA
TTTCCAACATCCTGGCTAAGCAGGACATCAAACGCACGCCACACCAGCTG
CGCAATAAACTAAGGCTGCTCTGCAAGCGTCATCGAGAGGCCAAGGAGCA
CGGGCTAGATAATGTACGCATTCTGCCCTCGCACTTTGAGCTTTTCG
BS07764.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10494-PB | 1335 | CG10494-RB | 1..911 | 17..927 | 4555 | 100 | Plus |
CG10494-PA | 1572 | CG10494-RA | 238..1148 | 17..927 | 4555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:55:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10494-RA | 1794 | CG10494-RA | 358..1288 | 17..947 | 4610 | 99.8 | Plus |
CG10494-RB | 2160 | CG10494-RB | 343..1273 | 17..947 | 4610 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21517981..21518398 | 686..269 | 2090 | 100 | Minus |
2R | 25286936 | 2R | 21518457..21518709 | 269..17 | 1265 | 100 | Minus |
2R | 25286936 | 2R | 21517661..21517923 | 947..685 | 1255 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:55:27 has no hits.
BS07764.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:03 Download gff for
BS07764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-PA | 234..1168 | 12..947 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:49 Download gff for
BS07764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-PA | 234..1168 | 12..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:59:59 Download gff for
BS07764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RB | 339..1273 | 12..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:50:43 Download gff for
BS07764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RB | 339..1273 | 12..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:50:43 Download gff for
BS07764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21517661..21517921 | 687..947 | 99 | <- | Minus |
2R | 21517981..21518397 | 270..686 | 100 | <- | Minus |
2R | 21518457..21518713 | 12..269 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:59:59 Download gff for
BS07764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17405166..17405426 | 687..947 | 99 | <- | Minus |
arm_2R | 17405486..17405902 | 270..686 | 100 | <- | Minus |
arm_2R | 17405962..17406218 | 12..269 | 99 | | Minus |
BS07764.complete Sequence
1367 bp (1367 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635976
> BS07764.complete
GAAGTTATCAGTCGACATGGTGTCCAGAGAAATGGCCCGGCGGAACTGCC
CCAAGAGTCCAAAGCATCTGAGAGTCAAGTTCCATCAGATGCGGCGTCAG
TATGCGAGAGCTCGGAATGGCGGCGAACCATTCGAGCACTTTGAGGCGGT
GCACGAGTTGATGCAGGGAGAAGATGTATCTGATCTGGATGAAGAGGCGC
TAGAGAGTGACAGCGATATGGAGGCCGACGAGGACCAGTCCGGCATGATC
TCAGAAACCGAAGGGGACGATGCTTTGGATGCCTCAGGATCTTCAGTTAA
CATCGTCGCCCGCTGCAAGTGGGCAGAGGGCGAAGTGGACCTCCTCCTAG
ACCTGATCCACACACTTGGACTGCGAGCAGCTTTGCTGCAAAAGCGCAAT
GCCAAGGTCTTCAAGCTGCTGTCCAAGGAGATGGCAAAACGCAACTGCCA
CAAGGGTGCTGAGAAGCTGCGCATCAAGTTCCAGCAGCTGCGGCGATTGT
ACAACAAGGTCAAGAACGGCACGGGGAAAACGTTCGAGCATTTTGAGGCG
ATGCGACTGGTCCTGGATCCCACCGAAGAGGAGGCGGCCGCAGATGCTGA
AGCGGAAGCCCATCTGAGCAGCGCAAGCGATAGTGATTTCAATGACAGTG
ACGAGGAAGAGGGTGATGCATCACAGAGAAGCGGAGCGCACTTTTGGACA
GACGAAGAGGTTGATTCGTTTCTACTCATCATTCGGGACAATGGTTTCTT
TCGCGCCTTGGATGGCTCAAGGAAGCGCAACTTCCAGACCCTGGTGCACA
TTTCCAACATCCTGGCTAAGCAGGACATCAAACGCACGCCACACCAGCTG
CGCAATAAACTAAGGCTGCTCTGCAAGCGTCATCGAGAGGCCAAGGAGCA
CGGGCTAGATAATGTACGCATTCTGCCTCGCCACTTTGAGCTTTTCGATG
AACTGATTCAGGCGCCGCGGGAGAACAGAGAAAGTGCCATCAGCAGGCTC
ATTCGCATCAGCAAGCCTTCCTTTCTCAAGCCGCCAGGCAAACCAAGCGT
TCCGCTGGAAAGTGACAGCGACAACTCCAGCTCCACCTGCGATCTCCTAA
GAGCGGCAGCCGATAGCGAGGACTACGTGGACGCCATCGAGATGGAGGCT
GAACCAACGCCGATTGAAGCACTCACTGCAATCATAGAAGGTCAAAAGCA
GCTGCTTGCGCAGATCAAAACTACCAACGAAAGCTTCTTGCGGCAGCAAC
GCGAGCAGCAGCATCAATTTTTGGAACAAGTATCGGAACTGATGCATCGA
GATCGAGAGGAGACCCTGCGCAGGATCAGCGAAATGCTGCAACCGAAGTA
AAAGCTTTCTAGACCAT
BS07764.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10494-RA | 1572 | CG10494-PA | 238..1572 | 17..1351 | 6675 | 100 | Plus |
CG10494-RB | 1335 | CG10494-PB | 1..1335 | 17..1351 | 6675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10494-RA | 1794 | CG10494-RA | 358..1692 | 17..1351 | 6675 | 100 | Plus |
CG10494-RB | 2160 | CG10494-RB | 343..1677 | 17..1351 | 6675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21517257..21517923 | 1351..685 | 3335 | 100 | Minus |
2R | 25286936 | 2R | 21517981..21518398 | 686..269 | 2090 | 100 | Minus |
2R | 25286936 | 2R | 21518457..21518709 | 269..17 | 1265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:10:39 has no hits.
BS07764.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:17 Download gff for
BS07764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RA | 234..1572 | 12..1351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:02 Download gff for
BS07764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RA | 335..1673 | 12..1351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:14 Download gff for
BS07764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RB | 343..1675 | 17..1349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:17 Download gff for
BS07764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RA | 335..1673 | 12..1351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:36 Download gff for
BS07764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RB | 343..1675 | 17..1349 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:36 Download gff for
BS07764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21518457..21518709 | 17..269 | 100 | | Minus |
2R | 21517259..21517921 | 687..1349 | 100 | <- | Minus |
2R | 21517981..21518397 | 270..686 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:14 Download gff for
BS07764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17405962..17406214 | 17..269 | 100 | | Minus |
arm_2R | 17404764..17405426 | 687..1349 | 100 | <- | Minus |
arm_2R | 17405486..17405902 | 270..686 | 100 | <- | Minus |
BS07764.pep Sequence
Translation from 16 to 1350
> BS07764.pep
MVSREMARRNCPKSPKHLRVKFHQMRRQYARARNGGEPFEHFEAVHELMQ
GEDVSDLDEEALESDSDMEADEDQSGMISETEGDDALDASGSSVNIVARC
KWAEGEVDLLLDLIHTLGLRAALLQKRNAKVFKLLSKEMAKRNCHKGAEK
LRIKFQQLRRLYNKVKNGTGKTFEHFEAMRLVLDPTEEEAAADAEAEAHL
SSASDSDFNDSDEEEGDASQRSGAHFWTDEEVDSFLLIIRDNGFFRALDG
SRKRNFQTLVHISNILAKQDIKRTPHQLRNKLRLLCKRHREAKEHGLDNV
RILPRHFELFDELIQAPRENRESAISRLIRISKPSFLKPPGKPSVPLESD
SDNSSSTCDLLRAAADSEDYVDAIEMEAEPTPIEALTAIIEGQKQLLAQI
KTTNESFLRQQREQQHQFLEQVSELMHRDREETLRRISEMLQPK*
BS07764.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10494-PA | 523 | CG10494-PA | 80..523 | 1..444 | 2265 | 100 | Plus |
CG10494-PB | 444 | CG10494-PB | 1..444 | 1..444 | 2265 | 100 | Plus |
CG10494-PA | 523 | CG10494-PA | 28..271 | 83..324 | 298 | 34.8 | Plus |