Clone Sequence Records
BS07766.3prime Sequence
806 bp (721 high quality bases) assembled on 2006-01-06
> BS07766.3prime
ATGGTCTAGAAAGCTTCTAGCTGTTTGTCTTGCGCTTCTCCAGTGCCTTC
CAAACCAGTTTCATGCGCTGCACGCAGTCGCGATGCTGGGACTCCCACAG
CAGTGTAGTAAGTCGTCCAACGGTGGCCACACCGTCCGCCGAGCTTCGAA
TCCACTGGAGCAACAGCTGGTATATCACCTCTCTAATATTGCCATGCATT
TGGTGATCGATTATGGCCTGGTCGATCTGTCCTTCCGACATGCCAAGATC
CCGCATCACCTGCTTCCAGCCCTCGCCCAAGTGCGTGGAAACCACATCGA
GCAGGCGCACATCCGGTTCCTCTTGTGACTGCATCATGGCCACAATGCTG
ACCGTTTTGCGCGTCGCACTTGCCCGCGGCTTACCGTCTGGAGAGGCGAC
CGACTCCTCTGCGGTACTGGTGCTACCCTTTCGCGAGCTGCAGGCGCTCA
AGTTTTGGTTGAAGTTGTAGACGGAGCCGAAGTGCAGATTATTGGCATTC
GAGAAGTTCATGACCACCTGTTGCTGGGCGCTGTGTACGTTCATGGTGTT
GTTTGTCTGGACGTTACTGAGAGTGCCCGGAATATTGGCGGAATGCACCA
CATCCATTGAATTGTAGTTTGGGTCGCTGAGCTCGCGCAGCACGGATTCG
GTCAGATCCGAGGAGGCTGTGGGCGTGCCAGCGGTGGAGGGCAGCGCCAG
GGCTCCGCTGTTGTTGTTATCTGGTTCGTTGTCGTCCACGGGAGCTGCGT
CCTTTTCCAGGCGTCCCTCGACGGGTGTCGGATTCTGTGCCTCCTTCCCG
CCAAAG
BS07766.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5576-PA | 822 | imd-RA | 33..822 | 806..17 | 3950 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| imd-RB | 1518 | CG5576-RB | 353..1142 | 806..17 | 3950 | 100 | Minus |
| imd-RA | 1320 | CG5576-RA | 155..944 | 806..17 | 3950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18410749..18411378 | 177..806 | 3150 | 100 | Plus |
| 2R | 25286936 | 2R | 18410172..18410335 | 17..180 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:33:22 has no hits.
BS07766.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:06 Download gff for
BS07766.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-PA | 33..822 | 17..806 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:53 Download gff for
BS07766.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5576-PA | 33..822 | 17..806 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:47:01 Download gff for
BS07766.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 155..944 | 17..806 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:02:22 Download gff for
BS07766.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 155..944 | 17..806 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:02:22 Download gff for
BS07766.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18410172..18410333 | 17..178 | 100 | <- | Plus |
| 2R | 18410751..18411378 | 179..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:47:01 Download gff for
BS07766.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14297677..14297838 | 17..178 | 100 | <- | Plus |
| arm_2R | 14298256..14298883 | 179..806 | 100 | | Plus |
BS07766.5prime Sequence
790 bp (694 high quality bases) assembled on 2006-01-06
> BS07766.5prime
GAAGTTATCAGTCGACATGTCAAAGCTCAGGAACCTGTTGCCCACAATCT
TTGGCGGGAAGGAGGCACAGAATCCGACACCCGTCGAGGGACGCCTGGAA
AAGGACGCAGCTCCCGTGGACGACAACGAACCAGATAACAACAACAGCGG
AGCCCTGGCGCTGCCCTCCACCGCTGGCACGCCCACAGCCTCCTCGGATC
TGACCGAATCCGTGCTGCGCGAGCTCAGCGACCCAAACTACAATTCAATG
GATGTGGTGCATTCCGCCAATATTCCGGGCACTCTCAGTAACGTCCAGAC
AAACAACACCATGAACGTACACAGCGCCCAGCAACAGGTGGTCATGAACT
TCTCGAATGCCAATAATCTGCACTTCGGCTCCGTCTACAACTTCAACCAA
AACTTGAGCGCCTGCAGCTCGCGAAAGGGTAGCACCAGTACCGCAGAGGA
GTCGGTCGCCTCTCCAGACGGTAAGCCGCGGGCAAGTGCGACGCGCAAAA
CGGTCAGCATTGTGGCCATGATGCAGTCACAAGAGGAACCGGATGTGCGC
CTGCTCGATGTGGTTTCCACGCACTTGGGCGAGGGCTGGAAGCAGGTGAT
GCGGGATCTTGGCATGTCGGAAGGACAGATCGACCAGGCCATAATCGATC
ACCAAATGCATGGCAATATTAGAGAGGTGATATACCAGCTGTTGCTCCAG
TGGATTCGAAGCTCGGCGGACGGTGTGGCCACCGTTGGACGACTTACTAC
ACTGCTGTGGGAGTCCCAGCATCGCGACTGCGTGCAGCGC
BS07766.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5576-PA | 822 | imd-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:19:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| imd-RB | 1518 | CG5576-RB | 320..1094 | 16..790 | 3875 | 100 | Plus |
| imd-RA | 1320 | CG5576-RA | 122..896 | 16..790 | 3875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18410749..18411411 | 678..16 | 3315 | 100 | Minus |
| 2R | 25286936 | 2R | 18410220..18410335 | 790..675 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:19:48 has no hits.
BS07766.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:07 Download gff for
BS07766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:54 Download gff for
BS07766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5576-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:15:14 Download gff for
BS07766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 117..896 | 10..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:17 Download gff for
BS07766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 117..896 | 10..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:17 Download gff for
BS07766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18410220..18410333 | 677..790 | 100 | <- | Minus |
| 2R | 18410751..18411416 | 10..676 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:15:14 Download gff for
BS07766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14297725..14297838 | 677..790 | 100 | <- | Minus |
| arm_2R | 14298256..14298921 | 10..676 | 99 | | Minus |
BS07766.complete Sequence
854 bp (854 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635977
> BS07766.complete
GAAGTTATCAGTCGACATGTCAAAGCTCAGGAACCTGTTGCCCACAATCT
TTGGCGGGAAGGAGGCACAGAATCCGACACCCGTCGAGGGACGCCTGGAA
AAGGACGCAGCTCCCGTGGACGACAACGAACCAGATAACAACAACAGCGG
AGCCCTGGCGCTGCCCTCCACCGCTGGCACGCCCACAGCCTCCTCGGATC
TGACCGAATCCGTGCTGCGCGAGCTCAGCGACCCAAACTACAATTCAATG
GATGTGGTGCATTCCGCCAATATTCCGGGCACTCTCAGTAACGTCCAGAC
AAACAACACCATGAACGTACACAGCGCCCAGCAACAGGTGGTCATGAACT
TCTCGAATGCCAATAATCTGCACTTCGGCTCCGTCTACAACTTCAACCAA
AACTTGAGCGCCTGCAGCTCGCGAAAGGGTAGCACCAGTACCGCAGAGGA
GTCGGTCGCCTCTCCAGACGGTAAGCCGCGGGCAAGTGCGACGCGCAAAA
CGGTCAGCATTGTGGCCATGATGCAGTCACAAGAGGAACCGGATGTGCGC
CTGCTCGATGTGGTTTCCACGCACTTGGGCGAGGGCTGGAAGCAGGTGAT
GCGGGATCTTGGCATGTCGGAAGGACAGATCGACCAGGCCATAATCGATC
ACCAAATGCATGGCAATATTAGAGAGGTGATATACCAGCTGTTGCTCCAG
TGGATTCGAAGCTCGGCGGACGGTGTGGCCACCGTTGGACGACTTACTAC
ACTGCTGTGGGAGTCCCAGCATCGCGACTGCGTGCAGCGCATGAAACTGG
TTTGGAAGGCACTGGAGAAGCGCAAGACAAACAGCTAGAAGCTTTCTAGA
CCAT
BS07766.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| imd-RB | 822 | CG5576-PB | 1..822 | 17..838 | 4110 | 100 | Plus |
| imd-RA | 822 | CG5576-PA | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| imd-RB | 1518 | CG5576-RB | 320..1142 | 16..838 | 4115 | 100 | Plus |
| imd-RA | 1320 | CG5576-RA | 122..944 | 16..838 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18410749..18411411 | 678..16 | 3315 | 100 | Minus |
| 2R | 25286936 | 2R | 18410172..18410335 | 838..675 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:28:18 has no hits.
BS07766.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:53 Download gff for
BS07766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:05 Download gff for
BS07766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 288..1115 | 10..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:56 Download gff for
BS07766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 123..944 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:53 Download gff for
BS07766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 288..1115 | 10..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:36 Download gff for
BS07766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 123..944 | 17..838 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:36 Download gff for
BS07766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18410172..18410333 | 677..838 | 100 | <- | Minus |
| 2R | 18410751..18411410 | 17..676 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:56 Download gff for
BS07766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14297677..14297838 | 677..838 | 100 | <- | Minus |
| arm_2R | 14298256..14298915 | 17..676 | 100 | | Minus |
BS07766.pep Sequence
Translation from 16 to 837
> BS07766.pep
MSKLRNLLPTIFGGKEAQNPTPVEGRLEKDAAPVDDNEPDNNNSGALALP
STAGTPTASSDLTESVLRELSDPNYNSMDVVHSANIPGTLSNVQTNNTMN
VHSAQQQVVMNFSNANNLHFGSVYNFNQNLSACSSRKGSTSTAEESVASP
DGKPRASATRKTVSIVAMMQSQEEPDVRLLDVVSTHLGEGWKQVMRDLGM
SEGQIDQAIIDHQMHGNIREVIYQLLLQWIRSSADGVATVGRLTTLLWES
QHRDCVQRMKLVWKALEKRKTNS*
BS07766.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| imd-PB | 273 | CG5576-PB | 1..273 | 1..273 | 1401 | 100 | Plus |
| imd-PA | 273 | CG5576-PA | 1..273 | 1..273 | 1401 | 100 | Plus |
