Clone Sequence Records
BS07767.3prime Sequence
831 bp (815 high quality bases) assembled on 2006-01-06
> BS07767.3prime
ATGGTCTAGAAAGCTTTTATATTGTGGTAGCCTCGGTTGTCCTGCTGACA
TTCATATTTTCATTCTCAAAGGGACCGGGAAAATTGTCCAGTTTGTGGGC
CACATCCTCCACACGGCAGCACTGCACCATTCCAAAGGCGGGAAACTCGT
GGAGTCTGGAGAAGAGGGTGTTCCTCAGCCAGGACACTTGGTTGCACATC
GAGGGGCACAGATTGCTTAAGTCACTGCGATAGAAGGGCGAGTTGTGTCC
AATGATGACGAACTCATCCTGTCCGGTACCGGACTTTTCCACAGCGTGAA
CATGGGCCCAAATGTGGGCGGGAATGGGCAGGAATTTGCCACCAATCAGT
TCAATGTTGAGCGATCGGCTTCCGTTGCATGATTGCCCGGCGAACGTCGG
CAGCTTCACGGTTCCGGAAACACCCAAACGAATGTCGAAGTGGACACCGA
TGGCATCACGCATTGCCTTCGTCCAATGCTTCCAGTTGCCGGAACGCAGA
ACCTCCAACCAGACGGTGGTCAGCAAGTCCTCGTAGACAACCAAGTGTCT
ACTAACCATCTCATCCTGGACCAAACTGCCAACCTGAAAAGTGTCCTCCG
TGAACAACTGCTTCTCCTTTGCCAAGTACGCATCAAGTTCACTCTTGCTG
ATGGTCTCGAATAGATTTTTTTGGTAACTGATAGGAGTATCAAGTCCGAT
ATCGTTAAGTTGTCCCAATTGGGTCTCTGGGAAAATCTGGATATTATTGA
AATTTGTGGTATAACCAATATATTTCAATTGAAATGCGGCCAAATCATAG
CACAATGCTGAATATTTTATTAAACCAATGC
BS07767.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2233-PA | 1245 | CG2233-RA | 431..1245 | 831..17 | 4075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:58:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2233-RA | 1480 | CG2233-RA | 463..1278 | 831..16 | 4080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8036220..8036637 | 233..650 | 2090 | 100 | Plus |
X | 23542271 | X | 8035943..8036159 | 16..232 | 1085 | 100 | Plus |
X | 23542271 | X | 8036900..8037006 | 725..831 | 535 | 100 | Plus |
X | 23542271 | X | 8036726..8036804 | 648..726 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 11:58:37 has no hits.
BS07767.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:08 Download gff for
BS07767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-PA | 431..1245 | 17..831 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:56 Download gff for
BS07767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-PA | 431..1245 | 17..831 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:45:07 Download gff for
BS07767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 463..1283 | 11..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:37:16 Download gff for
BS07767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 463..1283 | 11..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:37:16 Download gff for
BS07767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8035938..8036159 | 11..232 | 99 | <- | Plus |
X | 8036220..8036634 | 233..647 | 100 | <- | Plus |
X | 8036726..8036802 | 648..724 | 100 | <- | Plus |
X | 8036900..8037006 | 725..831 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:45:07 Download gff for
BS07767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7929971..7930192 | 11..232 | 99 | <- | Plus |
arm_X | 7930253..7930667 | 233..647 | 100 | <- | Plus |
arm_X | 7930759..7930835 | 648..724 | 100 | <- | Plus |
arm_X | 7930933..7931039 | 725..831 | 100 | | Plus |
BS07767.5prime Sequence
886 bp (802 high quality bases) assembled on 2006-01-06
> BS07767.5prime
GAAGTTATCAGTCGACATGTTTTCGATTAACGCCGTGATCCTGGGCATTT
TGGTTACTTCCGTTATGGCCCAGGATGCAAGGGGAACGTGTGAACTGAGC
ATCGGTTCTCCGGCTCCGGTTGTTATTAGCAATTTTGGCTCCCAGCGTTT
ATTGTTCGATTCCGTGCGAAAATTAGAACGGGAAAATTACCAGACCATTG
ACCTTTTCTGCGCGAGCGGATTTTCCATAGACTATTACAACTATTACAAC
AACCAGATCTCGACTACAATCAAAGCGACTAAACTTACAATGACCTGCGA
CCCTATTCATCGGTTTACCTATAAAGATGGCATAAAAGATGTAATTAGTG
TTCGGTGTCTGGAGGTCGGCCCTCAGTTGTTTGAGAGCATGAACAAATTG
CCAAATTGCACGGGCATGACTCTAGTTGTCGGAAGAAAATTCGATGGCAT
TGGTTTAATAAAATATTCAGCATTGTGCTATGATTTGGCCGCATTTCAAT
TGAAATATATTGGTTATACCACAAATTTCAATAATATCCAGATTTTCCCA
GAGACCCAATTGGGACAACTTAACGATATCGGACTTGATACTCCTATCAG
TTACCAAAAAAATCTATTCGAGACCATCAGCAAGAGTGAACTTGATGCGT
ACTTGGCAAAGGAGAAGCAGTTGTTCACGGAGGACACTTTTCAGGTTGGC
AGTTTGGTCCAGGATGAGATGGTTAGTAGACACTTGGTTGTCTACGAGGA
CTTGCTGACCACCGTCTGGTTGGAGGTTCTGCGTTCCGGCAACTGGAAGC
ATTGGACGAAGGCAATGCGTGATGCCATCGGTGTCCACTTCGACATTCGT
TTGGGTGTTTCCGGAACCGTGAAGCTGCCGACGTTT
BS07767.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2233-PA | 1245 | CG2233-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2233-RA | 1480 | CG2233-RA | 33..901 | 17..885 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:44:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8036900..8037212 | 553..241 | 1565 | 100 | Minus |
X | 23542271 | X | 8036380..8036637 | 885..628 | 1290 | 100 | Minus |
X | 23542271 | X | 8037262..8037485 | 240..17 | 1120 | 100 | Minus |
X | 23542271 | X | 8036726..8036804 | 630..552 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:44:19 has no hits.
BS07767.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:09 Download gff for
BS07767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-PA | 1..869 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:57 Download gff for
BS07767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-PA | 1..869 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:43:55 Download gff for
BS07767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 25..901 | 8..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:31:37 Download gff for
BS07767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 25..901 | 8..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:31:37 Download gff for
BS07767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8036379..8036634 | 631..886 | 99 | <- | Minus |
X | 8036726..8036802 | 554..630 | 100 | <- | Minus |
X | 8036900..8037212 | 241..553 | 100 | <- | Minus |
X | 8037262..8037493 | 8..240 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:43:55 Download gff for
BS07767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7930412..7930667 | 631..886 | 99 | <- | Minus |
arm_X | 7930759..7930835 | 554..630 | 100 | <- | Minus |
arm_X | 7930933..7931245 | 241..553 | 100 | <- | Minus |
arm_X | 7931295..7931526 | 8..240 | 98 | | Minus |
BS07767.complete Sequence
1277 bp (1277 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635978
> BS07767.complete
GAAGTTATCAGTCGACATGTTTTCGATTAACGCCGTGATCCTGGGCATTT
TGGTTACTTCCGTTATGGCCCAGGATGCAAGGGGAACGTGTGAACTGAGC
ATCGGTTCTCCGGCTCCGGTTGTTATTAGCAATTTTGGCTCCCAGCGTTT
ATTGTTCGATTCCGTGCGAAAATTAGAACGGGAAAATTACCAGACCATTG
ACCTTTTCTGCGCGAGCGGATTTTCCATAGACTATTACAACTATTACAAC
AACCAGATCTCGACTACAATCAAAGCGACTAAACTTACAATGACCTGCGA
CCCTATTCATCGGTTTACCTATAAAGATGGCATAAAAGATGTAATTAGTG
TTCGGTGTCTGGAGGTCGGCCCTCAGTTGTTTGAGAGCATGAACAAATTG
CCAAATTGCACGGGCATGACTCTAGTTGTCGGAAGAAAATTCGATGGCAT
TGGTTTAATAAAATATTCAGCATTGTGCTATGATTTGGCCGCATTTCAAT
TGAAATATATTGGTTATACCACAAATTTCAATAATATCCAGATTTTCCCA
GAGACCCAATTGGGACAACTTAACGATATCGGACTTGATACTCCTATCAG
TTACCAAAAAAATCTATTCGAGACCATCAGCAAGAGTGAACTTGATGCGT
ACTTGGCAAAGGAGAAGCAGTTGTTCACGGAGGACACTTTTCAGGTTGGC
AGTTTGGTCCAGGATGAGATGGTTAGTAGACACTTGGTTGTCTACGAGGA
CTTGCTGACCACCGTCTGGTTGGAGGTTCTGCGTTCCGGCAACTGGAAGC
ATTGGACGAAGGCAATGCGTGATGCCATCGGTGTCCACTTCGACATTCGT
TTGGGTGTTTCCGGAACCGTGAAGCTGCCGACGTTCGCCGGGCAATCATG
CAACGGAAGCCGATCGCTCAACATTGAACTGATTGGTGGCAAATTCCTGC
CCATTCCCGCCCACATTTGGGCCCATGTTCACGCTGTGGAAAAGTCCGGT
ACCGGACAGGATGAGTTCGTCATCATTGGACACAACTCGCCCTTCTATCG
CAGTGACTTAAGCAATCTGTGCCCCTCGATGTGCAACCAAGTGTCCTGGC
TGAGGAACACCCTCTTCTCCAGACTCCACGAGTTTCCCGCCTTTGGAATG
GTGCAGTGCTGCCGTGTGGAGGATGTGGCCCACAAACTGGACAATTTTCC
CGGTCCCTTTGAGAATGAAAATATGAATGTCAGCAGGACAACCGAGGCTA
CCACAATATAAAAGCTTTCTAGACCAT
BS07767.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2233-RA | 1245 | CG2233-PA | 1..1245 | 17..1261 | 6225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2233-RA | 1480 | CG2233-RA | 33..1278 | 17..1262 | 6230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:46:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8036220..8036637 | 1045..628 | 2090 | 100 | Minus |
X | 23542271 | X | 8036900..8037212 | 553..241 | 1565 | 100 | Minus |
X | 23542271 | X | 8037262..8037485 | 240..17 | 1120 | 100 | Minus |
X | 23542271 | X | 8035943..8036159 | 1262..1046 | 1085 | 100 | Minus |
X | 23542271 | X | 8036726..8036804 | 630..552 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:46:02 has no hits.
BS07767.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:18 Download gff for
BS07767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 1..1245 | 17..1261 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:03 Download gff for
BS07767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 8..1266 | 8..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:25 Download gff for
BS07767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 40..1275 | 24..1259 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:18 Download gff for
BS07767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 8..1266 | 8..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:44 Download gff for
BS07767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 40..1275 | 24..1259 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:44 Download gff for
BS07767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8035946..8036159 | 1046..1259 | 100 | <- | Minus |
X | 8036220..8036634 | 631..1045 | 100 | <- | Minus |
X | 8036726..8036802 | 554..630 | 100 | <- | Minus |
X | 8036900..8037212 | 241..553 | 100 | <- | Minus |
X | 8037262..8037478 | 24..240 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:25 Download gff for
BS07767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7929979..7930192 | 1046..1259 | 100 | <- | Minus |
arm_X | 7930253..7930667 | 631..1045 | 100 | <- | Minus |
arm_X | 7930759..7930835 | 554..630 | 100 | <- | Minus |
arm_X | 7930933..7931245 | 241..553 | 100 | <- | Minus |
arm_X | 7931295..7931511 | 24..240 | 100 | | Minus |
BS07767.pep Sequence
Translation from 16 to 1260
> BS07767.pep
MFSINAVILGILVTSVMAQDARGTCELSIGSPAPVVISNFGSQRLLFDSV
RKLERENYQTIDLFCASGFSIDYYNYYNNQISTTIKATKLTMTCDPIHRF
TYKDGIKDVISVRCLEVGPQLFESMNKLPNCTGMTLVVGRKFDGIGLIKY
SALCYDLAAFQLKYIGYTTNFNNIQIFPETQLGQLNDIGLDTPISYQKNL
FETISKSELDAYLAKEKQLFTEDTFQVGSLVQDEMVSRHLVVYEDLLTTV
WLEVLRSGNWKHWTKAMRDAIGVHFDIRLGVSGTVKLPTFAGQSCNGSRS
LNIELIGGKFLPIPAHIWAHVHAVEKSGTGQDEFVIIGHNSPFYRSDLSN
LCPSMCNQVSWLRNTLFSRLHEFPAFGMVQCCRVEDVAHKLDNFPGPFEN
ENMNVSRTTEATTI*
BS07767.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2233-PA | 414 | CG2233-PA | 1..414 | 1..414 | 2180 | 100 | Plus |