Clone BS07767 Report

Search the DGRC for BS07767

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG2233-RA
Protein status:BS07767.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07767.3prime Sequence

831 bp (815 high quality bases) assembled on 2006-01-06

> BS07767.3prime
ATGGTCTAGAAAGCTTTTATATTGTGGTAGCCTCGGTTGTCCTGCTGACA
TTCATATTTTCATTCTCAAAGGGACCGGGAAAATTGTCCAGTTTGTGGGC
CACATCCTCCACACGGCAGCACTGCACCATTCCAAAGGCGGGAAACTCGT
GGAGTCTGGAGAAGAGGGTGTTCCTCAGCCAGGACACTTGGTTGCACATC
GAGGGGCACAGATTGCTTAAGTCACTGCGATAGAAGGGCGAGTTGTGTCC
AATGATGACGAACTCATCCTGTCCGGTACCGGACTTTTCCACAGCGTGAA
CATGGGCCCAAATGTGGGCGGGAATGGGCAGGAATTTGCCACCAATCAGT
TCAATGTTGAGCGATCGGCTTCCGTTGCATGATTGCCCGGCGAACGTCGG
CAGCTTCACGGTTCCGGAAACACCCAAACGAATGTCGAAGTGGACACCGA
TGGCATCACGCATTGCCTTCGTCCAATGCTTCCAGTTGCCGGAACGCAGA
ACCTCCAACCAGACGGTGGTCAGCAAGTCCTCGTAGACAACCAAGTGTCT
ACTAACCATCTCATCCTGGACCAAACTGCCAACCTGAAAAGTGTCCTCCG
TGAACAACTGCTTCTCCTTTGCCAAGTACGCATCAAGTTCACTCTTGCTG
ATGGTCTCGAATAGATTTTTTTGGTAACTGATAGGAGTATCAAGTCCGAT
ATCGTTAAGTTGTCCCAATTGGGTCTCTGGGAAAATCTGGATATTATTGA
AATTTGTGGTATAACCAATATATTTCAATTGAAATGCGGCCAAATCATAG
CACAATGCTGAATATTTTATTAAACCAATGC

BS07767.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2233-PA 1245 CG2233-RA 431..1245 831..17 4075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2233-RA 1480 CG2233-RA 463..1278 831..16 4080 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8036220..8036637 233..650 2090 100 Plus
X 23542271 X 8035943..8036159 16..232 1085 100 Plus
X 23542271 X 8036900..8037006 725..831 535 100 Plus
X 23542271 X 8036726..8036804 648..726 395 100 Plus
Blast to na_te.dros performed on 2015-02-03 11:58:37 has no hits.

BS07767.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:08 Download gff for BS07767.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2233-PA 431..1245 17..831 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:56 Download gff for BS07767.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2233-PA 431..1245 17..831 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:45:07 Download gff for BS07767.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 463..1283 11..831 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:37:16 Download gff for BS07767.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 463..1283 11..831 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:37:16 Download gff for BS07767.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8035938..8036159 11..232 99 <- Plus
X 8036220..8036634 233..647 100 <- Plus
X 8036726..8036802 648..724 100 <- Plus
X 8036900..8037006 725..831 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:45:07 Download gff for BS07767.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7929971..7930192 11..232 99 <- Plus
arm_X 7930253..7930667 233..647 100 <- Plus
arm_X 7930759..7930835 648..724 100 <- Plus
arm_X 7930933..7931039 725..831 100   Plus

BS07767.5prime Sequence

886 bp (802 high quality bases) assembled on 2006-01-06

> BS07767.5prime
GAAGTTATCAGTCGACATGTTTTCGATTAACGCCGTGATCCTGGGCATTT
TGGTTACTTCCGTTATGGCCCAGGATGCAAGGGGAACGTGTGAACTGAGC
ATCGGTTCTCCGGCTCCGGTTGTTATTAGCAATTTTGGCTCCCAGCGTTT
ATTGTTCGATTCCGTGCGAAAATTAGAACGGGAAAATTACCAGACCATTG
ACCTTTTCTGCGCGAGCGGATTTTCCATAGACTATTACAACTATTACAAC
AACCAGATCTCGACTACAATCAAAGCGACTAAACTTACAATGACCTGCGA
CCCTATTCATCGGTTTACCTATAAAGATGGCATAAAAGATGTAATTAGTG
TTCGGTGTCTGGAGGTCGGCCCTCAGTTGTTTGAGAGCATGAACAAATTG
CCAAATTGCACGGGCATGACTCTAGTTGTCGGAAGAAAATTCGATGGCAT
TGGTTTAATAAAATATTCAGCATTGTGCTATGATTTGGCCGCATTTCAAT
TGAAATATATTGGTTATACCACAAATTTCAATAATATCCAGATTTTCCCA
GAGACCCAATTGGGACAACTTAACGATATCGGACTTGATACTCCTATCAG
TTACCAAAAAAATCTATTCGAGACCATCAGCAAGAGTGAACTTGATGCGT
ACTTGGCAAAGGAGAAGCAGTTGTTCACGGAGGACACTTTTCAGGTTGGC
AGTTTGGTCCAGGATGAGATGGTTAGTAGACACTTGGTTGTCTACGAGGA
CTTGCTGACCACCGTCTGGTTGGAGGTTCTGCGTTCCGGCAACTGGAAGC
ATTGGACGAAGGCAATGCGTGATGCCATCGGTGTCCACTTCGACATTCGT
TTGGGTGTTTCCGGAACCGTGAAGCTGCCGACGTTT

BS07767.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2233-PA 1245 CG2233-RA 1..869 17..885 4345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2233-RA 1480 CG2233-RA 33..901 17..885 4345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8036900..8037212 553..241 1565 100 Minus
X 23542271 X 8036380..8036637 885..628 1290 100 Minus
X 23542271 X 8037262..8037485 240..17 1120 100 Minus
X 23542271 X 8036726..8036804 630..552 395 100 Minus
Blast to na_te.dros performed on 2015-02-04 01:44:19 has no hits.

BS07767.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:09 Download gff for BS07767.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2233-PA 1..869 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:16:57 Download gff for BS07767.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2233-PA 1..869 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:43:55 Download gff for BS07767.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 25..901 8..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:31:37 Download gff for BS07767.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 25..901 8..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:31:37 Download gff for BS07767.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8036379..8036634 631..886 99 <- Minus
X 8036726..8036802 554..630 100 <- Minus
X 8036900..8037212 241..553 100 <- Minus
X 8037262..8037493 8..240 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:43:55 Download gff for BS07767.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7930412..7930667 631..886 99 <- Minus
arm_X 7930759..7930835 554..630 100 <- Minus
arm_X 7930933..7931245 241..553 100 <- Minus
arm_X 7931295..7931526 8..240 98   Minus

BS07767.complete Sequence

1277 bp (1277 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635978

> BS07767.complete
GAAGTTATCAGTCGACATGTTTTCGATTAACGCCGTGATCCTGGGCATTT
TGGTTACTTCCGTTATGGCCCAGGATGCAAGGGGAACGTGTGAACTGAGC
ATCGGTTCTCCGGCTCCGGTTGTTATTAGCAATTTTGGCTCCCAGCGTTT
ATTGTTCGATTCCGTGCGAAAATTAGAACGGGAAAATTACCAGACCATTG
ACCTTTTCTGCGCGAGCGGATTTTCCATAGACTATTACAACTATTACAAC
AACCAGATCTCGACTACAATCAAAGCGACTAAACTTACAATGACCTGCGA
CCCTATTCATCGGTTTACCTATAAAGATGGCATAAAAGATGTAATTAGTG
TTCGGTGTCTGGAGGTCGGCCCTCAGTTGTTTGAGAGCATGAACAAATTG
CCAAATTGCACGGGCATGACTCTAGTTGTCGGAAGAAAATTCGATGGCAT
TGGTTTAATAAAATATTCAGCATTGTGCTATGATTTGGCCGCATTTCAAT
TGAAATATATTGGTTATACCACAAATTTCAATAATATCCAGATTTTCCCA
GAGACCCAATTGGGACAACTTAACGATATCGGACTTGATACTCCTATCAG
TTACCAAAAAAATCTATTCGAGACCATCAGCAAGAGTGAACTTGATGCGT
ACTTGGCAAAGGAGAAGCAGTTGTTCACGGAGGACACTTTTCAGGTTGGC
AGTTTGGTCCAGGATGAGATGGTTAGTAGACACTTGGTTGTCTACGAGGA
CTTGCTGACCACCGTCTGGTTGGAGGTTCTGCGTTCCGGCAACTGGAAGC
ATTGGACGAAGGCAATGCGTGATGCCATCGGTGTCCACTTCGACATTCGT
TTGGGTGTTTCCGGAACCGTGAAGCTGCCGACGTTCGCCGGGCAATCATG
CAACGGAAGCCGATCGCTCAACATTGAACTGATTGGTGGCAAATTCCTGC
CCATTCCCGCCCACATTTGGGCCCATGTTCACGCTGTGGAAAAGTCCGGT
ACCGGACAGGATGAGTTCGTCATCATTGGACACAACTCGCCCTTCTATCG
CAGTGACTTAAGCAATCTGTGCCCCTCGATGTGCAACCAAGTGTCCTGGC
TGAGGAACACCCTCTTCTCCAGACTCCACGAGTTTCCCGCCTTTGGAATG
GTGCAGTGCTGCCGTGTGGAGGATGTGGCCCACAAACTGGACAATTTTCC
CGGTCCCTTTGAGAATGAAAATATGAATGTCAGCAGGACAACCGAGGCTA
CCACAATATAAAAGCTTTCTAGACCAT

BS07767.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2233-RA 1245 CG2233-PA 1..1245 17..1261 6225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG2233-RA 1480 CG2233-RA 33..1278 17..1262 6230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8036220..8036637 1045..628 2090 100 Minus
X 23542271 X 8036900..8037212 553..241 1565 100 Minus
X 23542271 X 8037262..8037485 240..17 1120 100 Minus
X 23542271 X 8035943..8036159 1262..1046 1085 100 Minus
X 23542271 X 8036726..8036804 630..552 395 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:46:02 has no hits.

BS07767.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:18 Download gff for BS07767.complete
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 1..1245 17..1261 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:03 Download gff for BS07767.complete
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 8..1266 8..1267 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:25 Download gff for BS07767.complete
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 40..1275 24..1259 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:18 Download gff for BS07767.complete
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 8..1266 8..1267 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:44 Download gff for BS07767.complete
Subject Subject Range Query Range Percent Splice Strand
CG2233-RA 40..1275 24..1259 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:44 Download gff for BS07767.complete
Subject Subject Range Query Range Percent Splice Strand
X 8035946..8036159 1046..1259 100 <- Minus
X 8036220..8036634 631..1045 100 <- Minus
X 8036726..8036802 554..630 100 <- Minus
X 8036900..8037212 241..553 100 <- Minus
X 8037262..8037478 24..240 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:25 Download gff for BS07767.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7929979..7930192 1046..1259 100 <- Minus
arm_X 7930253..7930667 631..1045 100 <- Minus
arm_X 7930759..7930835 554..630 100 <- Minus
arm_X 7930933..7931245 241..553 100 <- Minus
arm_X 7931295..7931511 24..240 100   Minus

BS07767.pep Sequence

Translation from 16 to 1260

> BS07767.pep
MFSINAVILGILVTSVMAQDARGTCELSIGSPAPVVISNFGSQRLLFDSV
RKLERENYQTIDLFCASGFSIDYYNYYNNQISTTIKATKLTMTCDPIHRF
TYKDGIKDVISVRCLEVGPQLFESMNKLPNCTGMTLVVGRKFDGIGLIKY
SALCYDLAAFQLKYIGYTTNFNNIQIFPETQLGQLNDIGLDTPISYQKNL
FETISKSELDAYLAKEKQLFTEDTFQVGSLVQDEMVSRHLVVYEDLLTTV
WLEVLRSGNWKHWTKAMRDAIGVHFDIRLGVSGTVKLPTFAGQSCNGSRS
LNIELIGGKFLPIPAHIWAHVHAVEKSGTGQDEFVIIGHNSPFYRSDLSN
LCPSMCNQVSWLRNTLFSRLHEFPAFGMVQCCRVEDVAHKLDNFPGPFEN
ENMNVSRTTEATTI*

BS07767.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2233-PA 414 CG2233-PA 1..414 1..414 2180 100 Plus