Clone BS07770 Report

Search the DGRC for BS07770

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptInx7-RB
Protein status:BS07770.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07770.3prime Sequence

887 bp (820 high quality bases) assembled on 2006-01-06

> BS07770.3prime
ATGGTCTAGAAAGCTTTTATACAGGTAACTTTGCCATATCCGAAGTCGAT
GGCCCTTGGGCTCCGCCGGCAGAGGGCGAGCCATTGCGTCGAAGGTGCAA
GAGTGGTGAATCAATCGTATCCAGACCACTGAGCTCCGGATAACGGTTCT
TAGCGGGCGTGGGCGGTGCCTCTCGATAGGCATTGACATCGTTATCGTGA
TCGGGATTGGGGAACTCACTAGCCAAATGATAGATAACCTTCTTGAATAG
GAACTCCGAAAGGTTGGAGCGCAGGAAGAAAAGGAACATCCAGTTGGAAA
AGTTACACTTATCAATTACCGCCAATAATTCGTTTTCGTCCAGTTGGCCA
GGCTTGGCCCAATAGAGAGACCAGCGGGTAAATGTGACATTTCTGTAGAA
GCACAGGGTTAAAATTCTCCAAAGCAGTCCCAGAACAGTAACAATCAAAA
GGAAGGCGTACCAGAACCACAGAATAATGTAGATCTTCTCGTTCATGATG
TTCAGCGCCATCACGCAAAGGGCATCGTGCATTTGAATGGAGCCAGAGTC
ACCAAATTTGTGGAACTTGCACTTGGTAATCTTCGGGAATACTAGATCCA
AAACGCTCAGCTCGTCGGACCACCGATTTTTCAGGGCATGTGGTCCCAGT
GTGAGGAATTGACCGCCCAAAAAACGGTTGGTCCATGTGATCTGCAGCAG
AAGATTAATCAGATTGAGCACCTCCGCGAAGACCAAGTGGGCACCCCACG
ATTGATTCAGCCGCATCCGGTCGATCATTGTGCGACGAATGTCCTTGACC
CGCTCCTCCGCCTCCGCCATCGAGGGAATGTTCAGCTTGCCGATACGCAG
ACTATCGTTCTTCAGGTACCTCGTTAGACCCACCATT

BS07770.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2977-PB 1086 inx7-RB 216..1086 887..17 4355 100 Minus
CG2977-PA 1317 inx7-RA 447..1317 887..17 4355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Inx7-RA 1634 CG2977-RA 646..1516 887..17 4355 100 Minus
Inx7-RB 1690 CG2977-RB 702..1572 887..17 4355 100 Minus
Inx3-RC 1652 CG1448-RC 864..981 577..460 185 77.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6992173..6992670 390..887 2490 100 Plus
X 23542271 X 6991730..6992102 17..389 1865 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:51:36 has no hits.

BS07770.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:14 Download gff for BS07770.3prime
Subject Subject Range Query Range Percent Splice Strand
inx7-PA 447..1317 17..887 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:05 Download gff for BS07770.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2977-PA 447..1317 17..887 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:03 Download gff for BS07770.3prime
Subject Subject Range Query Range Percent Splice Strand
Inx7-RB 702..1575 10..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:19 Download gff for BS07770.3prime
Subject Subject Range Query Range Percent Splice Strand
Inx7-RB 702..1575 10..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:19 Download gff for BS07770.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6991727..6992102 10..389 98 <- Plus
X 6992173..6992670 390..887 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:03 Download gff for BS07770.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6885760..6886135 10..389 98 <- Plus
arm_X 6886206..6886703 390..887 100   Plus

BS07770.5prime Sequence

949 bp (819 high quality bases) assembled on 2006-01-06

> BS07770.5prime
GAAGTTATCAGTCGACATGGTACGTGACCAGAACCAAACTGCCTACAGGC
CGGGAAGTGAGCCACCTGGTATAGGGGCATTCGATCCCGAAAAGGACACG
ATCAAGCGGCATGCATACTACCAGTGGGTGCCCTTTGTCCTGTTCTTCCA
GGCTCTCTGCTTCTACATTCCCCATGCCCTGTGGAAGAGTTGGGAGGGCG
GCCGGATCAAGGCCCTGGTCTTTGGCCTTCGAATGGTGGGTCTAACGAGG
TACCTGAAGAACGATAGTCTGCGTATCGGCAAGCTGAACATTCCCTCGAT
GGCGGAGGCGGAGGAGCGGGTCAAGGACATTCGTCGCACAATGATCGACC
GGATGCGGCTGAATCAATCGTGGGGTGCCCACTTGGTCTTCGCGGAGGTG
CTCAATCTGATTAATCTTCTGCTGCAGATCACATGGACCAACCGTTTTTT
GGGCGGTCAATTCCTCACACTGGGACCACATGCCCTGAAAAATCGGTGGT
CCGACGAGCTGAGCGTTTTGGATCTAGTATTCCCGAAGATTACCAAGTGC
AAGTTCCACAAATTTGGTGACTCTGGCTCCATTCAAATGCACGATGCCCT
TTGCGTGATGGCGCTGAACATCATGAACGAGAAGATCTACATTATTCTGT
GGTTCTGGTACGCCTTCCTTTTGATTGTTACTGTTCTGGGACTGCTTTGG
AGAATTTTAACCCTGTGCTTCTACAGAAATGTCACATTTACCCGCTGGTC
TCTCTATTGGGCCAAGCCTGGCCAACTGGACGAAAACGAATTATTGGCGG
TAATTGATAAGTGTAACTTTTCCNACTGGATGTTCCTTTTCTTCCTGCGC
TCCAACCTTTCGGAGTTCCTATTCAAGAAGGTTATCTATCATTTGGCTAG
TGAGTTCCCCAATCCCGATCACGATAACGATGTCAATGCCTATCGAGAG

BS07770.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2977-PB 1086 inx7-RB 1..933 17..949 4646 99.8 Plus
CG2977-PA 1317 inx7-RA 233..1164 18..949 4641 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
Inx7-RB 1690 CG2977-RB 487..1419 17..949 4654 99.9 Plus
Inx7-RA 1634 CG2977-RA 432..1363 18..949 4649 99.9 Plus
Inx3-RC 1652 CG1448-RC 864..981 542..659 185 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6992173..6992883 729..19 3555 100 Minus
X 23542271 X 6991883..6992102 949..730 1089 99.5 Minus
Blast to na_te.dros performed on 2015-02-11 18:07:41 has no hits.

BS07770.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:15 Download gff for BS07770.5prime
Subject Subject Range Query Range Percent Splice Strand
inx7-PB 1..933 17..949 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:06 Download gff for BS07770.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2977-PB 1..933 17..949 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:24:30 Download gff for BS07770.5prime
Subject Subject Range Query Range Percent Splice Strand
Inx7-RB 481..1419 9..949 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:38:40 Download gff for BS07770.5prime
Subject Subject Range Query Range Percent Splice Strand
Inx7-RB 481..1419 9..949 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:38:40 Download gff for BS07770.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6991883..6992102 730..949 99 <- Minus
X 6992173..6992883 19..729 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:24:30 Download gff for BS07770.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6885916..6886135 730..949 99 <- Minus
arm_X 6886206..6886916 19..729 100   Minus

BS07770.complete Sequence

1118 bp (1118 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635979

> BS07770.complete
GAAGTTATCAGTCGACATGGTACGTGACCAGAACCAAACTGCCTACAGGC
CGGGAAGTGAGCCACCTGGTATAGGGGCATTCGATCCCGAAAAGGACACG
ATCAAGCGGCATGCATACTACCAGTGGGTGCCCTTTGTCCTGTTCTTCCA
GGCTCTCTGCTTCTACATTCCCCATGCCCTGTGGAAGAGTTGGGAGGGCG
GCCGGATCAAGGCCCTGGTCTTTGGCCTTCGAATGGTGGGTCTAACGAGG
TACCTGAAGAACGATAGTCTGCGTATCGGCAAGCTGAACATTCCCTCGAT
GGCGGAGGCGGAGGAGCGGGTCAAGGACATTCGTCGCACAATGATCGACC
GGATGCGGCTGAATCAATCGTGGGGTGCCCACTTGGTCTTCGCGGAGGTG
CTCAATCTGATTAATCTTCTGCTGCAGATCACATGGACCAACCGTTTTTT
GGGCGGTCAATTCCTCACACTGGGACCACATGCCCTGAAAAATCGGTGGT
CCGACGAGCTGAGCGTTTTGGATCTAGTATTCCCGAAGATTACCAAGTGC
AAGTTCCACAAATTTGGTGACTCTGGCTCCATTCAAATGCACGATGCCCT
TTGCGTGATGGCGCTGAACATCATGAACGAGAAGATCTACATTATTCTGT
GGTTCTGGTACGCCTTCCTTTTGATTGTTACTGTTCTGGGACTGCTTTGG
AGAATTTTAACCCTGTGCTTCTACAGAAATGTCACATTTACCCGCTGGTC
TCTCTATTGGGCCAAGCCTGGCCAACTGGACGAAAACGAATTATTGGCGG
TAATTGATAAGTGTAACTTTTCCAACTGGATGTTCCTTTTCTTCCTGCGC
TCCAACCTTTCGGAGTTCCTATTCAAGAAGGTTATCTATCATTTGGCTAG
TGAGTTCCCCAATCCCGATCACGATAACGATGTCAATGCCTATCGAGAGG
CACCGCCCACGCCCGCTAAGAACCGTTATCCGGAGCTCAGTGGTCTGGAT
ACGATTGATTCACCACTCTTGCACCTTCGACGCAATGGCTCGCCCTCTGC
CGGCGGAGCCCAAGGGCCATCGACTTCGGATATGGCAAAGTTACCTGTAT
AAAAGCTTTCTAGACCAT

BS07770.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
Inx7-RB 1086 CG2977-PB 1..1086 17..1102 5430 100 Plus
Inx7-RA 1317 CG2977-PA 233..1317 18..1102 5425 100 Plus
Inx3-RC 1188 CG1448-PC 724..841 542..659 185 77.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
Inx7-RB 1690 CG2977-RB 487..1572 17..1102 5430 100 Plus
Inx7-RA 1634 CG2977-RA 432..1516 18..1102 5425 100 Plus
Inx3-RC 1652 CG1448-RC 864..981 542..659 185 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6992173..6992883 729..19 3555 100 Minus
X 23542271 X 6991730..6992102 1102..730 1865 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:00:26 has no hits.

BS07770.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:16 Download gff for BS07770.complete
Subject Subject Range Query Range Percent Splice Strand
inx7-RB 1..1086 17..1102 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:14 Download gff for BS07770.complete
Subject Subject Range Query Range Percent Splice Strand
inx7-RB 481..1575 9..1109 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:32 Download gff for BS07770.complete
Subject Subject Range Query Range Percent Splice Strand
Inx7-RB 487..1570 17..1100 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:17 Download gff for BS07770.complete
Subject Subject Range Query Range Percent Splice Strand
inx7-RB 481..1575 9..1109 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:40 Download gff for BS07770.complete
Subject Subject Range Query Range Percent Splice Strand
Inx7-RB 487..1570 17..1100 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:40 Download gff for BS07770.complete
Subject Subject Range Query Range Percent Splice Strand
X 6991732..6992102 730..1100 100 <- Minus
X 6992173..6992884 17..729 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:32 Download gff for BS07770.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6885765..6886135 730..1100 100 <- Minus
arm_X 6886206..6886917 17..729 99   Minus

BS07770.pep Sequence

Translation from 16 to 1101

> BS07770.pep
MVRDQNQTAYRPGSEPPGIGAFDPEKDTIKRHAYYQWVPFVLFFQALCFY
IPHALWKSWEGGRIKALVFGLRMVGLTRYLKNDSLRIGKLNIPSMAEAEE
RVKDIRRTMIDRMRLNQSWGAHLVFAEVLNLINLLLQITWTNRFLGGQFL
TLGPHALKNRWSDELSVLDLVFPKITKCKFHKFGDSGSIQMHDALCVMAL
NIMNEKIYIILWFWYAFLLIVTVLGLLWRILTLCFYRNVTFTRWSLYWAK
PGQLDENELLAVIDKCNFSNWMFLFFLRSNLSEFLFKKVIYHLASEFPNP
DHDNDVNAYREAPPTPAKNRYPELSGLDTIDSPLLHLRRNGSPSAGGAQG
PSTSDMAKLPV*

BS07770.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
Inx7-PB 361 CG2977-PB 1..361 1..361 1940 100 Plus
Inx7-PA 438 CG2977-PA 78..438 1..361 1936 99.7 Plus
Inx2-PD 367 CG4590-PD 91..358 17..302 514 37.7 Plus
Inx2-PC 367 CG4590-PC 91..358 17..302 514 37.7 Plus
Inx2-PB 367 CG4590-PB 91..358 17..302 514 37.7 Plus