Clone Sequence Records
BS07770.3prime Sequence
887 bp (820 high quality bases) assembled on 2006-01-06
> BS07770.3prime
ATGGTCTAGAAAGCTTTTATACAGGTAACTTTGCCATATCCGAAGTCGAT
GGCCCTTGGGCTCCGCCGGCAGAGGGCGAGCCATTGCGTCGAAGGTGCAA
GAGTGGTGAATCAATCGTATCCAGACCACTGAGCTCCGGATAACGGTTCT
TAGCGGGCGTGGGCGGTGCCTCTCGATAGGCATTGACATCGTTATCGTGA
TCGGGATTGGGGAACTCACTAGCCAAATGATAGATAACCTTCTTGAATAG
GAACTCCGAAAGGTTGGAGCGCAGGAAGAAAAGGAACATCCAGTTGGAAA
AGTTACACTTATCAATTACCGCCAATAATTCGTTTTCGTCCAGTTGGCCA
GGCTTGGCCCAATAGAGAGACCAGCGGGTAAATGTGACATTTCTGTAGAA
GCACAGGGTTAAAATTCTCCAAAGCAGTCCCAGAACAGTAACAATCAAAA
GGAAGGCGTACCAGAACCACAGAATAATGTAGATCTTCTCGTTCATGATG
TTCAGCGCCATCACGCAAAGGGCATCGTGCATTTGAATGGAGCCAGAGTC
ACCAAATTTGTGGAACTTGCACTTGGTAATCTTCGGGAATACTAGATCCA
AAACGCTCAGCTCGTCGGACCACCGATTTTTCAGGGCATGTGGTCCCAGT
GTGAGGAATTGACCGCCCAAAAAACGGTTGGTCCATGTGATCTGCAGCAG
AAGATTAATCAGATTGAGCACCTCCGCGAAGACCAAGTGGGCACCCCACG
ATTGATTCAGCCGCATCCGGTCGATCATTGTGCGACGAATGTCCTTGACC
CGCTCCTCCGCCTCCGCCATCGAGGGAATGTTCAGCTTGCCGATACGCAG
ACTATCGTTCTTCAGGTACCTCGTTAGACCCACCATT
BS07770.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2977-PB | 1086 | inx7-RB | 216..1086 | 887..17 | 4355 | 100 | Minus |
CG2977-PA | 1317 | inx7-RA | 447..1317 | 887..17 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx7-RA | 1634 | CG2977-RA | 646..1516 | 887..17 | 4355 | 100 | Minus |
Inx7-RB | 1690 | CG2977-RB | 702..1572 | 887..17 | 4355 | 100 | Minus |
Inx3-RC | 1652 | CG1448-RC | 864..981 | 577..460 | 185 | 77.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6992173..6992670 | 390..887 | 2490 | 100 | Plus |
X | 23542271 | X | 6991730..6992102 | 17..389 | 1865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:51:36 has no hits.
BS07770.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:14 Download gff for
BS07770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx7-PA | 447..1317 | 17..887 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:05 Download gff for
BS07770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2977-PA | 447..1317 | 17..887 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:03 Download gff for
BS07770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx7-RB | 702..1575 | 10..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:19 Download gff for
BS07770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx7-RB | 702..1575 | 10..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:19 Download gff for
BS07770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6991727..6992102 | 10..389 | 98 | <- | Plus |
X | 6992173..6992670 | 390..887 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:03 Download gff for
BS07770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6885760..6886135 | 10..389 | 98 | <- | Plus |
arm_X | 6886206..6886703 | 390..887 | 100 | | Plus |
BS07770.5prime Sequence
949 bp (819 high quality bases) assembled on 2006-01-06
> BS07770.5prime
GAAGTTATCAGTCGACATGGTACGTGACCAGAACCAAACTGCCTACAGGC
CGGGAAGTGAGCCACCTGGTATAGGGGCATTCGATCCCGAAAAGGACACG
ATCAAGCGGCATGCATACTACCAGTGGGTGCCCTTTGTCCTGTTCTTCCA
GGCTCTCTGCTTCTACATTCCCCATGCCCTGTGGAAGAGTTGGGAGGGCG
GCCGGATCAAGGCCCTGGTCTTTGGCCTTCGAATGGTGGGTCTAACGAGG
TACCTGAAGAACGATAGTCTGCGTATCGGCAAGCTGAACATTCCCTCGAT
GGCGGAGGCGGAGGAGCGGGTCAAGGACATTCGTCGCACAATGATCGACC
GGATGCGGCTGAATCAATCGTGGGGTGCCCACTTGGTCTTCGCGGAGGTG
CTCAATCTGATTAATCTTCTGCTGCAGATCACATGGACCAACCGTTTTTT
GGGCGGTCAATTCCTCACACTGGGACCACATGCCCTGAAAAATCGGTGGT
CCGACGAGCTGAGCGTTTTGGATCTAGTATTCCCGAAGATTACCAAGTGC
AAGTTCCACAAATTTGGTGACTCTGGCTCCATTCAAATGCACGATGCCCT
TTGCGTGATGGCGCTGAACATCATGAACGAGAAGATCTACATTATTCTGT
GGTTCTGGTACGCCTTCCTTTTGATTGTTACTGTTCTGGGACTGCTTTGG
AGAATTTTAACCCTGTGCTTCTACAGAAATGTCACATTTACCCGCTGGTC
TCTCTATTGGGCCAAGCCTGGCCAACTGGACGAAAACGAATTATTGGCGG
TAATTGATAAGTGTAACTTTTCCNACTGGATGTTCCTTTTCTTCCTGCGC
TCCAACCTTTCGGAGTTCCTATTCAAGAAGGTTATCTATCATTTGGCTAG
TGAGTTCCCCAATCCCGATCACGATAACGATGTCAATGCCTATCGAGAG
BS07770.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2977-PB | 1086 | inx7-RB | 1..933 | 17..949 | 4646 | 99.8 | Plus |
CG2977-PA | 1317 | inx7-RA | 233..1164 | 18..949 | 4641 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx7-RB | 1690 | CG2977-RB | 487..1419 | 17..949 | 4654 | 99.9 | Plus |
Inx7-RA | 1634 | CG2977-RA | 432..1363 | 18..949 | 4649 | 99.9 | Plus |
Inx3-RC | 1652 | CG1448-RC | 864..981 | 542..659 | 185 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6992173..6992883 | 729..19 | 3555 | 100 | Minus |
X | 23542271 | X | 6991883..6992102 | 949..730 | 1089 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:07:41 has no hits.
BS07770.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:15 Download gff for
BS07770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx7-PB | 1..933 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:06 Download gff for
BS07770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2977-PB | 1..933 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:24:30 Download gff for
BS07770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx7-RB | 481..1419 | 9..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:38:40 Download gff for
BS07770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx7-RB | 481..1419 | 9..949 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:38:40 Download gff for
BS07770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6991883..6992102 | 730..949 | 99 | <- | Minus |
X | 6992173..6992883 | 19..729 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:24:30 Download gff for
BS07770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6885916..6886135 | 730..949 | 99 | <- | Minus |
arm_X | 6886206..6886916 | 19..729 | 100 | | Minus |
BS07770.complete Sequence
1118 bp (1118 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635979
> BS07770.complete
GAAGTTATCAGTCGACATGGTACGTGACCAGAACCAAACTGCCTACAGGC
CGGGAAGTGAGCCACCTGGTATAGGGGCATTCGATCCCGAAAAGGACACG
ATCAAGCGGCATGCATACTACCAGTGGGTGCCCTTTGTCCTGTTCTTCCA
GGCTCTCTGCTTCTACATTCCCCATGCCCTGTGGAAGAGTTGGGAGGGCG
GCCGGATCAAGGCCCTGGTCTTTGGCCTTCGAATGGTGGGTCTAACGAGG
TACCTGAAGAACGATAGTCTGCGTATCGGCAAGCTGAACATTCCCTCGAT
GGCGGAGGCGGAGGAGCGGGTCAAGGACATTCGTCGCACAATGATCGACC
GGATGCGGCTGAATCAATCGTGGGGTGCCCACTTGGTCTTCGCGGAGGTG
CTCAATCTGATTAATCTTCTGCTGCAGATCACATGGACCAACCGTTTTTT
GGGCGGTCAATTCCTCACACTGGGACCACATGCCCTGAAAAATCGGTGGT
CCGACGAGCTGAGCGTTTTGGATCTAGTATTCCCGAAGATTACCAAGTGC
AAGTTCCACAAATTTGGTGACTCTGGCTCCATTCAAATGCACGATGCCCT
TTGCGTGATGGCGCTGAACATCATGAACGAGAAGATCTACATTATTCTGT
GGTTCTGGTACGCCTTCCTTTTGATTGTTACTGTTCTGGGACTGCTTTGG
AGAATTTTAACCCTGTGCTTCTACAGAAATGTCACATTTACCCGCTGGTC
TCTCTATTGGGCCAAGCCTGGCCAACTGGACGAAAACGAATTATTGGCGG
TAATTGATAAGTGTAACTTTTCCAACTGGATGTTCCTTTTCTTCCTGCGC
TCCAACCTTTCGGAGTTCCTATTCAAGAAGGTTATCTATCATTTGGCTAG
TGAGTTCCCCAATCCCGATCACGATAACGATGTCAATGCCTATCGAGAGG
CACCGCCCACGCCCGCTAAGAACCGTTATCCGGAGCTCAGTGGTCTGGAT
ACGATTGATTCACCACTCTTGCACCTTCGACGCAATGGCTCGCCCTCTGC
CGGCGGAGCCCAAGGGCCATCGACTTCGGATATGGCAAAGTTACCTGTAT
AAAAGCTTTCTAGACCAT
BS07770.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:00:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx7-RB | 1086 | CG2977-PB | 1..1086 | 17..1102 | 5430 | 100 | Plus |
Inx7-RA | 1317 | CG2977-PA | 233..1317 | 18..1102 | 5425 | 100 | Plus |
Inx3-RC | 1188 | CG1448-PC | 724..841 | 542..659 | 185 | 77.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:00:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx7-RB | 1690 | CG2977-RB | 487..1572 | 17..1102 | 5430 | 100 | Plus |
Inx7-RA | 1634 | CG2977-RA | 432..1516 | 18..1102 | 5425 | 100 | Plus |
Inx3-RC | 1652 | CG1448-RC | 864..981 | 542..659 | 185 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6992173..6992883 | 729..19 | 3555 | 100 | Minus |
X | 23542271 | X | 6991730..6992102 | 1102..730 | 1865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:00:26 has no hits.
BS07770.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:16 Download gff for
BS07770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx7-RB | 1..1086 | 17..1102 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:14 Download gff for
BS07770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx7-RB | 481..1575 | 9..1109 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:32 Download gff for
BS07770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx7-RB | 487..1570 | 17..1100 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:17 Download gff for
BS07770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx7-RB | 481..1575 | 9..1109 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:40 Download gff for
BS07770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx7-RB | 487..1570 | 17..1100 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:40 Download gff for
BS07770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6991732..6992102 | 730..1100 | 100 | <- | Minus |
X | 6992173..6992884 | 17..729 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:32 Download gff for
BS07770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6885765..6886135 | 730..1100 | 100 | <- | Minus |
arm_X | 6886206..6886917 | 17..729 | 99 | | Minus |
BS07770.pep Sequence
Translation from 16 to 1101
> BS07770.pep
MVRDQNQTAYRPGSEPPGIGAFDPEKDTIKRHAYYQWVPFVLFFQALCFY
IPHALWKSWEGGRIKALVFGLRMVGLTRYLKNDSLRIGKLNIPSMAEAEE
RVKDIRRTMIDRMRLNQSWGAHLVFAEVLNLINLLLQITWTNRFLGGQFL
TLGPHALKNRWSDELSVLDLVFPKITKCKFHKFGDSGSIQMHDALCVMAL
NIMNEKIYIILWFWYAFLLIVTVLGLLWRILTLCFYRNVTFTRWSLYWAK
PGQLDENELLAVIDKCNFSNWMFLFFLRSNLSEFLFKKVIYHLASEFPNP
DHDNDVNAYREAPPTPAKNRYPELSGLDTIDSPLLHLRRNGSPSAGGAQG
PSTSDMAKLPV*
BS07770.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx7-PB | 361 | CG2977-PB | 1..361 | 1..361 | 1940 | 100 | Plus |
Inx7-PA | 438 | CG2977-PA | 78..438 | 1..361 | 1936 | 99.7 | Plus |
Inx2-PD | 367 | CG4590-PD | 91..358 | 17..302 | 514 | 37.7 | Plus |
Inx2-PC | 367 | CG4590-PC | 91..358 | 17..302 | 514 | 37.7 | Plus |
Inx2-PB | 367 | CG4590-PB | 91..358 | 17..302 | 514 | 37.7 | Plus |