Clone Sequence Records
BS07773.3prime Sequence
928 bp (822 high quality bases) assembled on 2006-01-06
> BS07773.3prime
ATGGTCTAGAAAGCTTCTAAACGCAATTCCGCCTCACAAGCTTGACTTTT
ATTTTATTTTTGAAGCGCAAGGTTATGCCCACTTGGAAGACAATGGACTT
GGGATCGATAACAGGCAGAATCTTGAAATGCTTGAGGATGACCACCATCA
GGGTCTTCATCTCCTGCATGGCGTACTTCTGGCCTATGCAGTTCCTTTGT
CCAGCACTGAAGGGAATGTAGGCGTAAGGATGCCTTTTCAGGCAGTTCTG
AGGTAGGAATCGCTCTGGGCGGAATTCTTCGGGCGATTCCCAATACTTGG
GATTGCGATGGATGTCAAAGACGTGTATATTAATCTGAGAGCGCTTCGGC
AGGATTAGGCCATTCTCTAGTTCCGTTTCCTGGAGTGTCTGACGACCCAT
GATGGGAATCGAAGGATACAGGCGCATGGTTTCCTTTATAAAGTAGCCCA
GATAATTTAGTTTACTTAGTTGACTTAGGTTCAGGTTGCTCAGGTCGTCC
AGAATGTGCTCCTGGATCTCTTGGTAGCACAGTTCCTGTTCAGCGGCATA
TAGAGACATATTCATTAGGCCAAAGACCAGACCAATGGATGTGGTATCGT
AACCTTCAGCCATCAGCGTGTCCACCTCCTCAGAAATCCCAATATCGTCG
ATTAGTCCATCCTTTTCGGCGCAAATCAAGGTGTCCAGCATGGCGAAGCG
TTTCTTTCTAATCACGCATATATCATCGTCAGCCGTTTGAGTGGCTCTTC
TATTTTCCAGCTCCTCTTCAAGTAGTACTCTGCGTTTTGCGATTATCTCT
CTGGAAAATTCGTGTACCACTTTTAGAGCTGCGTTGTACTTGTGTCCCGT
GAACATGTTGTATACACAATCGTCCCCATAGAGCGGGGTTACTATGCGCC
TGGTAAGTCCTTCGTCGATTATGTGAAA
BS07773.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1944-PA | 1563 | Cyp4p2-RA | 652..1563 | 928..17 | 4510 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4p2-RA | 1777 | CG1944-RA | 692..1603 | 928..17 | 4530 | 99.8 | Minus |
Cyp4p1-RA | 1680 | CG10842-RA | 899..1576 | 707..30 | 900 | 75.7 | Minus |
Cyp4p3-RA | 1667 | CG10843-RA | 794..1528 | 820..83 | 830 | 74.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9239098..9239419 | 504..183 | 1595 | 99.7 | Minus |
2R | 25286936 | 2R | 9238819..9239039 | 719..499 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 9238552..9238760 | 928..720 | 1015 | 99 | Minus |
2R | 25286936 | 2R | 9239489..9239657 | 185..17 | 845 | 100 | Minus |
2R | 25286936 | 2R | 9241539..9241808 | 464..195 | 420 | 77 | Minus |
2R | 25286936 | 2R | 9243842..9244112 | 453..183 | 395 | 76.4 | Minus |
2R | 25286936 | 2R | 9243538..9243725 | 700..513 | 385 | 80.3 | Minus |
2R | 25286936 | 2R | 9241242..9241398 | 707..551 | 350 | 81.5 | Minus |
2R | 25286936 | 2R | 9241887..9242035 | 178..30 | 220 | 76.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:54:41 has no hits.
BS07773.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:20 Download gff for
BS07773.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1944-PA | 655..1563 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:14 Download gff for
BS07773.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1944-PA | 655..1563 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:06:22 Download gff for
BS07773.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 695..1613 | 5..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:29 Download gff for
BS07773.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 695..1613 | 5..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:29 Download gff for
BS07773.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9239491..9239667 | 5..183 | 97 | | Minus |
2R | 9238555..9238760 | 720..925 | 99 | -> | Minus |
2R | 9238819..9239039 | 499..719 | 100 | -> | Minus |
2R | 9239104..9239418 | 184..498 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:06:22 Download gff for
BS07773.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5126060..5126265 | 720..925 | 99 | -> | Minus |
arm_2R | 5126324..5126544 | 499..719 | 100 | -> | Minus |
arm_2R | 5126609..5126923 | 184..498 | 100 | -> | Minus |
arm_2R | 5126996..5127172 | 5..183 | 97 | | Minus |
BS07773.5prime Sequence
828 bp (770 high quality bases) assembled on 2006-01-06
> BS07773.5prime
GAAGTTATCAGTCGACATGATGATTTGTCTTCTGTGGATTTCGGTGGCCA
TACTTGTGGTCATCCACTGGATCTATAAGGTAAACAAAGACTACAATATC
CTGGCCTTTTTCGCCCGAAGGGTTCAAACCAAGGATGGCAAACCATTGGA
CAGCTTAGTGCCCATGATCAAGGGCCGAACTGTGTTCGCCAACTGCTTCG
ATCTCTTAGGAAAAGACACTGACCAGGTATTTACTCACTTACGCCAGTTG
GCGAAGAACAGCGGAGACAGTTATCTGCAGTACTCCATGGGGTTTTCCAA
CTTCAATGTTATAGATGCGCATAATGCAGCGAACATATTGAATCATCCTA
ATCTGATAACGAAGGGTGTAATATATAATTTTCTTCACCCTTTCCTAAGA
ACTGGCGTTCTAACAGCGACAGAAAAGAAATGGCACACGCGACGCAGTAT
GCTCACTAGGACATTCCATTTGGATATATTGAACCAGTTCCAAGAAATCT
TTATAGCGGAGAGCTTGAAGTTCGTAAGTCAGTTCCAAGGACAAAATGAA
GTTGTGGTTTCTTTGAAGGACCGCATATCCCGATTTACCCTAAATAGCAT
TTGTGAAACTGCCATGGGAATCAAACTGGATGAAATGGCAGAGAAGGGCG
ATCGCTACAGGGCGAACTTTCACATAATCGACGAAGGACTTACCAGGCGC
ATAGTAAACCCGCTCTATTGGGACGATTGTGTATACAACATGTTCACGGG
ACACAAGTACAACGCAGCTCTAAAAGTGGTACACGAATTTTCCAGAGAGA
TAATCGCAAAACGCAGAGTACTACTTGA
BS07773.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1944-PA | 1563 | Cyp4p2-RA | 1..812 | 17..828 | 4060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:16:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4p2-RA | 1777 | CG1944-RA | 39..852 | 15..828 | 4070 | 100 | Plus |
Cyp4p3-RA | 1667 | CG10843-RA | 315..687 | 297..669 | 345 | 74.3 | Plus |
Cyp4p1-RA | 1680 | CG10842-RA | 358..688 | 339..669 | 305 | 73.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9238489..9238712 | 605..828 | 1120 | 100 | Plus |
2R | 25286936 | 2R | 9237550..9237756 | 15..221 | 1035 | 100 | Plus |
2R | 25286936 | 2R | 9237836..9238037 | 221..422 | 1010 | 100 | Plus |
2R | 25286936 | 2R | 9238331..9238431 | 505..605 | 505 | 100 | Plus |
2R | 25286936 | 2R | 9238089..9238173 | 420..504 | 425 | 100 | Plus |
2R | 25286936 | 2R | 9240609..9240684 | 428..503 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:16:17 has no hits.
BS07773.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:21 Download gff for
BS07773.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1944-PA | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:16 Download gff for
BS07773.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1944-PA | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:58:33 Download gff for
BS07773.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 30..851 | 3..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:13:55 Download gff for
BS07773.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 30..851 | 3..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:13:55 Download gff for
BS07773.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9238490..9238711 | 606..827 | 100 | | Plus |
2R | 9237541..9237756 | 3..221 | 97 | -> | Plus |
2R | 9237837..9238037 | 222..422 | 100 | -> | Plus |
2R | 9238092..9238173 | 423..504 | 100 | -> | Plus |
2R | 9238331..9238431 | 505..605 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:58:33 Download gff for
BS07773.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5125046..5125261 | 3..221 | 97 | -> | Plus |
arm_2R | 5125342..5125542 | 222..422 | 100 | -> | Plus |
arm_2R | 5125597..5125678 | 423..504 | 100 | -> | Plus |
arm_2R | 5125836..5125936 | 505..605 | 100 | -> | Plus |
arm_2R | 5125995..5126216 | 606..827 | 100 | | Plus |
BS07773.complete Sequence
1595 bp (1595 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635981
> BS07773.complete
GAAGTTATCAGTCGACATGATGATTTGTCTTCTGTGGATTTCGGTGGCCA
TACTTGTGGTCATCCACTGGATCTATAAGGTAAACAAAGACTACAATATC
CTGGCCTTTTTCGCCCGAAGGGTTCAAACCAAGGATGGCAAACCATTGGA
CAGCTTAGTGCCCATGATCAAGGGCCGAACTGTGTTCGCCAACTGCTTCG
ATCTCTTAGGAAAAGACACTGACCAGGTATTTACTCACTTACGCCAGTTG
GCGAAGAACAGCGGAGACAGTTATCTGCAGTACTCCATGGGGTTTTCCAA
CTTCAATGTTATAGATGCGCATAATGCAGCGAACATATTGAATCATCCTA
ATCTGATAACGAAGGGTGTAATATATAATTTTCTTCACCCTTTCCTAAGA
ACTGGCGTTCTAACAGCGACAGAAAAGAAATGGCACACGCGACGCAGTAT
GCTCACTAGGACATTCCATTTGGATATATTGAACCAGTTCCAAGAAATCT
TTATAGCGGAGAGCTTGAAGTTCGTAAGTCAGTTCCAAGGACAAAATGAA
GTTGTGGTTTCTTTGAAGGACCGCATATCCCGATTTACCCTAAATAGCAT
TTGTGAAACTGCCATGGGAATCAAACTGGATGAAATGGCAGAGAAGGGCG
ATCGCTACAGGGCGAACTTTCACATAATCGACGAAGGACTTACCAGGCGC
ATAGTAAACCCGCTCTATTGGGACGATTGTGTATACAACATGTTCACGGG
ACACAAGTACAACGCAGCTCTAAAAGTGGTACACGAATTTTCCAGAGAGA
TAATCGCAAAACGCAGAGTACTACTTGAAGAGGAGCTGGAAAATAGAAGA
GCCACTCAAACGGCTGACGATGATATATGCGTGATTAGAAAGAAACGCTT
CGCCATGCTGGACACCTTGATTTGCGCCGAAAAGGATGGACTAATCGACG
ATATTGGGATTTCTGAGGAGGTGGACACGCTGATGGCTGAAGGTTACGAT
ACCACATCCATTGGTCTGGTCTTTGGCCTAATGAATATGTCTCTATATGC
CGCTGAACAGGAACTGTGCTACCAAGAGATCCAGGAGCACATTCTGGACG
ACCTGAGCAACCTGAACCTAAGTCAACTAAGTAAACTAAATTATCTGGGC
TACTTTATAAAGGAAACCATGCGCCTGTATCCTTCGATTCCCATCATGGG
TCGTCAGACACTCCAGGAAACGGAACTAGAGAATGGCCTAATCCTGCCGA
AGCGCTCTCAGATTAATATACACGTCTTTGACATCCATCGCAATCCCAAG
TATTGGGAATCGCCCGAAGAATTCCGCCCAGAGCGATTCCTACCTCAGAA
CTGCCTGAAAAGGCATCCTTACGCCTACATTCCCTTCAGTGCTGGACAAA
GGAACTGCATAGGCCAGAAGTACGCCATGCAGGAGATGAAGACCCTGATG
GTGGTCATCCTCAAGCATTTCAAGATTCTGCCTGTTATCGATCCCAAGTC
CATTGTCTTCCAAGTGGGCATAACCTTGCGCTTCAAAAATAAAATAAAAG
TCAAGCTTGTGAGGCGGAATTGCGTTTAGAAGCTTTCTAGACCAT
BS07773.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4p2-RA | 1563 | CG1944-PA | 1..1563 | 17..1579 | 7815 | 100 | Plus |
Cyp4p3-RA | 1548 | CG10843-PA | 319..1488 | 341..1513 | 925 | 72.1 | Plus |
Cyp4p1-RA | 1542 | CG10842-PA | 858..1535 | 889..1566 | 900 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4p2-RA | 1777 | CG1944-RA | 39..1603 | 15..1579 | 7825 | 100 | Plus |
Cyp4p3-RA | 1667 | CG10843-RA | 359..1528 | 341..1513 | 925 | 72.1 | Plus |
Cyp4p1-RA | 1680 | CG10842-RA | 899..1576 | 889..1566 | 900 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9239098..9239419 | 1092..1413 | 1595 | 99.7 | Plus |
2R | 25286936 | 2R | 9238489..9238760 | 605..876 | 1360 | 100 | Plus |
2R | 25286936 | 2R | 9238819..9239039 | 877..1097 | 1105 | 100 | Plus |
2R | 25286936 | 2R | 9237550..9237756 | 15..221 | 1035 | 100 | Plus |
2R | 25286936 | 2R | 9237836..9238037 | 221..422 | 1010 | 100 | Plus |
2R | 25286936 | 2R | 9239489..9239657 | 1411..1579 | 845 | 100 | Plus |
2R | 25286936 | 2R | 9238331..9238431 | 505..605 | 505 | 100 | Plus |
2R | 25286936 | 2R | 9238089..9238173 | 420..504 | 425 | 100 | Plus |
2R | 25286936 | 2R | 9241539..9241808 | 1132..1401 | 420 | 77 | Plus |
2R | 25286936 | 2R | 9243842..9244112 | 1143..1413 | 395 | 76.4 | Plus |
2R | 25286936 | 2R | 9243538..9243725 | 896..1083 | 385 | 80.3 | Plus |
2R | 25286936 | 2R | 9241242..9241398 | 889..1045 | 350 | 81.5 | Plus |
2R | 25286936 | 2R | 9241887..9242035 | 1418..1566 | 220 | 76.5 | Plus |
2R | 25286936 | 2R | 9240609..9240684 | 428..503 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:53:56 has no hits.
BS07773.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:20 Download gff for
BS07773.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 1..1563 | 17..1579 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:05 Download gff for
BS07773.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 12..1595 | 3..1591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:22 Download gff for
BS07773.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 41..1603 | 17..1579 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:20 Download gff for
BS07773.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 12..1595 | 3..1591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:22 Download gff for
BS07773.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 41..1603 | 17..1579 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:22 Download gff for
BS07773.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9239104..9239418 | 1098..1412 | 100 | -> | Plus |
2R | 9239491..9239657 | 1413..1579 | 100 | | Plus |
2R | 9237552..9237756 | 17..221 | 100 | -> | Plus |
2R | 9237837..9238037 | 222..422 | 100 | -> | Plus |
2R | 9238092..9238173 | 423..504 | 100 | -> | Plus |
2R | 9238331..9238431 | 505..605 | 100 | -> | Plus |
2R | 9238490..9238760 | 606..876 | 100 | -> | Plus |
2R | 9238819..9239039 | 877..1097 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:22 Download gff for
BS07773.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5125057..5125261 | 17..221 | 100 | -> | Plus |
arm_2R | 5125342..5125542 | 222..422 | 100 | -> | Plus |
arm_2R | 5125597..5125678 | 423..504 | 100 | -> | Plus |
arm_2R | 5125836..5125936 | 505..605 | 100 | -> | Plus |
arm_2R | 5125995..5126265 | 606..876 | 100 | -> | Plus |
arm_2R | 5126324..5126544 | 877..1097 | 100 | -> | Plus |
arm_2R | 5126609..5126923 | 1098..1412 | 100 | -> | Plus |
arm_2R | 5126996..5127162 | 1413..1579 | 100 | | Plus |
BS07773.pep Sequence
Translation from 16 to 1578
> BS07773.pep
MMICLLWISVAILVVIHWIYKVNKDYNILAFFARRVQTKDGKPLDSLVPM
IKGRTVFANCFDLLGKDTDQVFTHLRQLAKNSGDSYLQYSMGFSNFNVID
AHNAANILNHPNLITKGVIYNFLHPFLRTGVLTATEKKWHTRRSMLTRTF
HLDILNQFQEIFIAESLKFVSQFQGQNEVVVSLKDRISRFTLNSICETAM
GIKLDEMAEKGDRYRANFHIIDEGLTRRIVNPLYWDDCVYNMFTGHKYNA
ALKVVHEFSREIIAKRRVLLEEELENRRATQTADDDICVIRKKRFAMLDT
LICAEKDGLIDDIGISEEVDTLMAEGYDTTSIGLVFGLMNMSLYAAEQEL
CYQEIQEHILDDLSNLNLSQLSKLNYLGYFIKETMRLYPSIPIMGRQTLQ
ETELENGLILPKRSQINIHVFDIHRNPKYWESPEEFRPERFLPQNCLKRH
PYAYIPFSAGQRNCIGQKYAMQEMKTLMVVILKHFKILPVIDPKSIVFQV
GITLRFKNKIKVKLVRRNCV*
BS07773.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4p2-PA | 520 | CG1944-PA | 1..520 | 1..520 | 2710 | 100 | Plus |
Cyp4p3-PA | 515 | CG10843-PA | 3..514 | 5..517 | 1811 | 67.4 | Plus |
Cyp4p1-PA | 513 | CG10842-PA | 3..512 | 5..517 | 1802 | 66.3 | Plus |
Cyp4ac1-PA | 509 | CG14032-PA | 1..507 | 1..517 | 1070 | 42.2 | Plus |
Cyp4ac2-PB | 511 | CG17970-PB | 1..508 | 1..517 | 1017 | 40.8 | Plus |