Clone BS07773 Report

Search the DGRC for BS07773

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCyp4p2-RA
Protein status:BS07773.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07773.3prime Sequence

928 bp (822 high quality bases) assembled on 2006-01-06

> BS07773.3prime
ATGGTCTAGAAAGCTTCTAAACGCAATTCCGCCTCACAAGCTTGACTTTT
ATTTTATTTTTGAAGCGCAAGGTTATGCCCACTTGGAAGACAATGGACTT
GGGATCGATAACAGGCAGAATCTTGAAATGCTTGAGGATGACCACCATCA
GGGTCTTCATCTCCTGCATGGCGTACTTCTGGCCTATGCAGTTCCTTTGT
CCAGCACTGAAGGGAATGTAGGCGTAAGGATGCCTTTTCAGGCAGTTCTG
AGGTAGGAATCGCTCTGGGCGGAATTCTTCGGGCGATTCCCAATACTTGG
GATTGCGATGGATGTCAAAGACGTGTATATTAATCTGAGAGCGCTTCGGC
AGGATTAGGCCATTCTCTAGTTCCGTTTCCTGGAGTGTCTGACGACCCAT
GATGGGAATCGAAGGATACAGGCGCATGGTTTCCTTTATAAAGTAGCCCA
GATAATTTAGTTTACTTAGTTGACTTAGGTTCAGGTTGCTCAGGTCGTCC
AGAATGTGCTCCTGGATCTCTTGGTAGCACAGTTCCTGTTCAGCGGCATA
TAGAGACATATTCATTAGGCCAAAGACCAGACCAATGGATGTGGTATCGT
AACCTTCAGCCATCAGCGTGTCCACCTCCTCAGAAATCCCAATATCGTCG
ATTAGTCCATCCTTTTCGGCGCAAATCAAGGTGTCCAGCATGGCGAAGCG
TTTCTTTCTAATCACGCATATATCATCGTCAGCCGTTTGAGTGGCTCTTC
TATTTTCCAGCTCCTCTTCAAGTAGTACTCTGCGTTTTGCGATTATCTCT
CTGGAAAATTCGTGTACCACTTTTAGAGCTGCGTTGTACTTGTGTCCCGT
GAACATGTTGTATACACAATCGTCCCCATAGAGCGGGGTTACTATGCGCC
TGGTAAGTCCTTCGTCGATTATGTGAAA

BS07773.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1944-PA 1563 Cyp4p2-RA 652..1563 928..17 4510 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p2-RA 1777 CG1944-RA 692..1603 928..17 4530 99.8 Minus
Cyp4p1-RA 1680 CG10842-RA 899..1576 707..30 900 75.7 Minus
Cyp4p3-RA 1667 CG10843-RA 794..1528 820..83 830 74.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9239098..9239419 504..183 1595 99.7 Minus
2R 25286936 2R 9238819..9239039 719..499 1105 100 Minus
2R 25286936 2R 9238552..9238760 928..720 1015 99 Minus
2R 25286936 2R 9239489..9239657 185..17 845 100 Minus
2R 25286936 2R 9241539..9241808 464..195 420 77 Minus
2R 25286936 2R 9243842..9244112 453..183 395 76.4 Minus
2R 25286936 2R 9243538..9243725 700..513 385 80.3 Minus
2R 25286936 2R 9241242..9241398 707..551 350 81.5 Minus
2R 25286936 2R 9241887..9242035 178..30 220 76.5 Minus
Blast to na_te.dros performed on 2015-02-10 18:54:41 has no hits.

BS07773.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:20 Download gff for BS07773.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1944-PA 655..1563 17..925 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:14 Download gff for BS07773.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1944-PA 655..1563 17..925 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:06:22 Download gff for BS07773.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 695..1613 5..925 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:29 Download gff for BS07773.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 695..1613 5..925 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:29 Download gff for BS07773.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9239491..9239667 5..183 97   Minus
2R 9238555..9238760 720..925 99 -> Minus
2R 9238819..9239039 499..719 100 -> Minus
2R 9239104..9239418 184..498 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:06:22 Download gff for BS07773.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5126060..5126265 720..925 99 -> Minus
arm_2R 5126324..5126544 499..719 100 -> Minus
arm_2R 5126609..5126923 184..498 100 -> Minus
arm_2R 5126996..5127172 5..183 97   Minus

BS07773.5prime Sequence

828 bp (770 high quality bases) assembled on 2006-01-06

> BS07773.5prime
GAAGTTATCAGTCGACATGATGATTTGTCTTCTGTGGATTTCGGTGGCCA
TACTTGTGGTCATCCACTGGATCTATAAGGTAAACAAAGACTACAATATC
CTGGCCTTTTTCGCCCGAAGGGTTCAAACCAAGGATGGCAAACCATTGGA
CAGCTTAGTGCCCATGATCAAGGGCCGAACTGTGTTCGCCAACTGCTTCG
ATCTCTTAGGAAAAGACACTGACCAGGTATTTACTCACTTACGCCAGTTG
GCGAAGAACAGCGGAGACAGTTATCTGCAGTACTCCATGGGGTTTTCCAA
CTTCAATGTTATAGATGCGCATAATGCAGCGAACATATTGAATCATCCTA
ATCTGATAACGAAGGGTGTAATATATAATTTTCTTCACCCTTTCCTAAGA
ACTGGCGTTCTAACAGCGACAGAAAAGAAATGGCACACGCGACGCAGTAT
GCTCACTAGGACATTCCATTTGGATATATTGAACCAGTTCCAAGAAATCT
TTATAGCGGAGAGCTTGAAGTTCGTAAGTCAGTTCCAAGGACAAAATGAA
GTTGTGGTTTCTTTGAAGGACCGCATATCCCGATTTACCCTAAATAGCAT
TTGTGAAACTGCCATGGGAATCAAACTGGATGAAATGGCAGAGAAGGGCG
ATCGCTACAGGGCGAACTTTCACATAATCGACGAAGGACTTACCAGGCGC
ATAGTAAACCCGCTCTATTGGGACGATTGTGTATACAACATGTTCACGGG
ACACAAGTACAACGCAGCTCTAAAAGTGGTACACGAATTTTCCAGAGAGA
TAATCGCAAAACGCAGAGTACTACTTGA

BS07773.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1944-PA 1563 Cyp4p2-RA 1..812 17..828 4060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p2-RA 1777 CG1944-RA 39..852 15..828 4070 100 Plus
Cyp4p3-RA 1667 CG10843-RA 315..687 297..669 345 74.3 Plus
Cyp4p1-RA 1680 CG10842-RA 358..688 339..669 305 73.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9238489..9238712 605..828 1120 100 Plus
2R 25286936 2R 9237550..9237756 15..221 1035 100 Plus
2R 25286936 2R 9237836..9238037 221..422 1010 100 Plus
2R 25286936 2R 9238331..9238431 505..605 505 100 Plus
2R 25286936 2R 9238089..9238173 420..504 425 100 Plus
2R 25286936 2R 9240609..9240684 428..503 185 82.9 Plus
Blast to na_te.dros performed on 2015-02-12 12:16:17 has no hits.

BS07773.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:21 Download gff for BS07773.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1944-PA 1..811 17..827 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:16 Download gff for BS07773.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1944-PA 1..811 17..827 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:58:33 Download gff for BS07773.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 30..851 3..827 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:13:55 Download gff for BS07773.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 30..851 3..827 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:13:55 Download gff for BS07773.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9238490..9238711 606..827 100   Plus
2R 9237541..9237756 3..221 97 -> Plus
2R 9237837..9238037 222..422 100 -> Plus
2R 9238092..9238173 423..504 100 -> Plus
2R 9238331..9238431 505..605 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:58:33 Download gff for BS07773.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5125046..5125261 3..221 97 -> Plus
arm_2R 5125342..5125542 222..422 100 -> Plus
arm_2R 5125597..5125678 423..504 100 -> Plus
arm_2R 5125836..5125936 505..605 100 -> Plus
arm_2R 5125995..5126216 606..827 100   Plus

BS07773.complete Sequence

1595 bp (1595 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635981

> BS07773.complete
GAAGTTATCAGTCGACATGATGATTTGTCTTCTGTGGATTTCGGTGGCCA
TACTTGTGGTCATCCACTGGATCTATAAGGTAAACAAAGACTACAATATC
CTGGCCTTTTTCGCCCGAAGGGTTCAAACCAAGGATGGCAAACCATTGGA
CAGCTTAGTGCCCATGATCAAGGGCCGAACTGTGTTCGCCAACTGCTTCG
ATCTCTTAGGAAAAGACACTGACCAGGTATTTACTCACTTACGCCAGTTG
GCGAAGAACAGCGGAGACAGTTATCTGCAGTACTCCATGGGGTTTTCCAA
CTTCAATGTTATAGATGCGCATAATGCAGCGAACATATTGAATCATCCTA
ATCTGATAACGAAGGGTGTAATATATAATTTTCTTCACCCTTTCCTAAGA
ACTGGCGTTCTAACAGCGACAGAAAAGAAATGGCACACGCGACGCAGTAT
GCTCACTAGGACATTCCATTTGGATATATTGAACCAGTTCCAAGAAATCT
TTATAGCGGAGAGCTTGAAGTTCGTAAGTCAGTTCCAAGGACAAAATGAA
GTTGTGGTTTCTTTGAAGGACCGCATATCCCGATTTACCCTAAATAGCAT
TTGTGAAACTGCCATGGGAATCAAACTGGATGAAATGGCAGAGAAGGGCG
ATCGCTACAGGGCGAACTTTCACATAATCGACGAAGGACTTACCAGGCGC
ATAGTAAACCCGCTCTATTGGGACGATTGTGTATACAACATGTTCACGGG
ACACAAGTACAACGCAGCTCTAAAAGTGGTACACGAATTTTCCAGAGAGA
TAATCGCAAAACGCAGAGTACTACTTGAAGAGGAGCTGGAAAATAGAAGA
GCCACTCAAACGGCTGACGATGATATATGCGTGATTAGAAAGAAACGCTT
CGCCATGCTGGACACCTTGATTTGCGCCGAAAAGGATGGACTAATCGACG
ATATTGGGATTTCTGAGGAGGTGGACACGCTGATGGCTGAAGGTTACGAT
ACCACATCCATTGGTCTGGTCTTTGGCCTAATGAATATGTCTCTATATGC
CGCTGAACAGGAACTGTGCTACCAAGAGATCCAGGAGCACATTCTGGACG
ACCTGAGCAACCTGAACCTAAGTCAACTAAGTAAACTAAATTATCTGGGC
TACTTTATAAAGGAAACCATGCGCCTGTATCCTTCGATTCCCATCATGGG
TCGTCAGACACTCCAGGAAACGGAACTAGAGAATGGCCTAATCCTGCCGA
AGCGCTCTCAGATTAATATACACGTCTTTGACATCCATCGCAATCCCAAG
TATTGGGAATCGCCCGAAGAATTCCGCCCAGAGCGATTCCTACCTCAGAA
CTGCCTGAAAAGGCATCCTTACGCCTACATTCCCTTCAGTGCTGGACAAA
GGAACTGCATAGGCCAGAAGTACGCCATGCAGGAGATGAAGACCCTGATG
GTGGTCATCCTCAAGCATTTCAAGATTCTGCCTGTTATCGATCCCAAGTC
CATTGTCTTCCAAGTGGGCATAACCTTGCGCTTCAAAAATAAAATAAAAG
TCAAGCTTGTGAGGCGGAATTGCGTTTAGAAGCTTTCTAGACCAT

BS07773.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p2-RA 1563 CG1944-PA 1..1563 17..1579 7815 100 Plus
Cyp4p3-RA 1548 CG10843-PA 319..1488 341..1513 925 72.1 Plus
Cyp4p1-RA 1542 CG10842-PA 858..1535 889..1566 900 75.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p2-RA 1777 CG1944-RA 39..1603 15..1579 7825 100 Plus
Cyp4p3-RA 1667 CG10843-RA 359..1528 341..1513 925 72.1 Plus
Cyp4p1-RA 1680 CG10842-RA 899..1576 889..1566 900 75.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9239098..9239419 1092..1413 1595 99.7 Plus
2R 25286936 2R 9238489..9238760 605..876 1360 100 Plus
2R 25286936 2R 9238819..9239039 877..1097 1105 100 Plus
2R 25286936 2R 9237550..9237756 15..221 1035 100 Plus
2R 25286936 2R 9237836..9238037 221..422 1010 100 Plus
2R 25286936 2R 9239489..9239657 1411..1579 845 100 Plus
2R 25286936 2R 9238331..9238431 505..605 505 100 Plus
2R 25286936 2R 9238089..9238173 420..504 425 100 Plus
2R 25286936 2R 9241539..9241808 1132..1401 420 77 Plus
2R 25286936 2R 9243842..9244112 1143..1413 395 76.4 Plus
2R 25286936 2R 9243538..9243725 896..1083 385 80.3 Plus
2R 25286936 2R 9241242..9241398 889..1045 350 81.5 Plus
2R 25286936 2R 9241887..9242035 1418..1566 220 76.5 Plus
2R 25286936 2R 9240609..9240684 428..503 185 82.9 Plus
Blast to na_te.dros performed on 2014-11-27 19:53:56 has no hits.

BS07773.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:20 Download gff for BS07773.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 1..1563 17..1579 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:05 Download gff for BS07773.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 12..1595 3..1591 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:22 Download gff for BS07773.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 41..1603 17..1579 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:20 Download gff for BS07773.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 12..1595 3..1591 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:22 Download gff for BS07773.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 41..1603 17..1579 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:22 Download gff for BS07773.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9239104..9239418 1098..1412 100 -> Plus
2R 9239491..9239657 1413..1579 100   Plus
2R 9237552..9237756 17..221 100 -> Plus
2R 9237837..9238037 222..422 100 -> Plus
2R 9238092..9238173 423..504 100 -> Plus
2R 9238331..9238431 505..605 100 -> Plus
2R 9238490..9238760 606..876 100 -> Plus
2R 9238819..9239039 877..1097 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:22 Download gff for BS07773.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5125057..5125261 17..221 100 -> Plus
arm_2R 5125342..5125542 222..422 100 -> Plus
arm_2R 5125597..5125678 423..504 100 -> Plus
arm_2R 5125836..5125936 505..605 100 -> Plus
arm_2R 5125995..5126265 606..876 100 -> Plus
arm_2R 5126324..5126544 877..1097 100 -> Plus
arm_2R 5126609..5126923 1098..1412 100 -> Plus
arm_2R 5126996..5127162 1413..1579 100   Plus

BS07773.pep Sequence

Translation from 16 to 1578

> BS07773.pep
MMICLLWISVAILVVIHWIYKVNKDYNILAFFARRVQTKDGKPLDSLVPM
IKGRTVFANCFDLLGKDTDQVFTHLRQLAKNSGDSYLQYSMGFSNFNVID
AHNAANILNHPNLITKGVIYNFLHPFLRTGVLTATEKKWHTRRSMLTRTF
HLDILNQFQEIFIAESLKFVSQFQGQNEVVVSLKDRISRFTLNSICETAM
GIKLDEMAEKGDRYRANFHIIDEGLTRRIVNPLYWDDCVYNMFTGHKYNA
ALKVVHEFSREIIAKRRVLLEEELENRRATQTADDDICVIRKKRFAMLDT
LICAEKDGLIDDIGISEEVDTLMAEGYDTTSIGLVFGLMNMSLYAAEQEL
CYQEIQEHILDDLSNLNLSQLSKLNYLGYFIKETMRLYPSIPIMGRQTLQ
ETELENGLILPKRSQINIHVFDIHRNPKYWESPEEFRPERFLPQNCLKRH
PYAYIPFSAGQRNCIGQKYAMQEMKTLMVVILKHFKILPVIDPKSIVFQV
GITLRFKNKIKVKLVRRNCV*

BS07773.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p2-PA 520 CG1944-PA 1..520 1..520 2710 100 Plus
Cyp4p3-PA 515 CG10843-PA 3..514 5..517 1811 67.4 Plus
Cyp4p1-PA 513 CG10842-PA 3..512 5..517 1802 66.3 Plus
Cyp4ac1-PA 509 CG14032-PA 1..507 1..517 1070 42.2 Plus
Cyp4ac2-PB 511 CG17970-PB 1..508 1..517 1017 40.8 Plus