Clone Sequence Records
BS07776.3prime Sequence
812 bp (810 high quality bases) assembled on 2006-01-06
> BS07776.3prime
ATGGTCTAGAAAGCTTCTAGTCATATTCGTGTATCCAGGCTGTCATTACC
CATTTGGAACCATGAAAGACGGGACAAGCGGCGTGCATAGTGGTGGGCTC
CATGTCGTGGGTGTCGCCATTAAGATTGTACCAGAACAGAACTTTTCCCC
GTTCGGCAGGTACTTTAACATTTAAACGCGGGAAGACAGTGGCACCTCCG
TAAGGAGCATCATTTAGATAAAACATAAAGGTGGCCATCCGATCACCAAA
TCCTTTAGATTCCGAGTTTCTCTTTTTGAAGAAGTCATAGTAATTAGTGT
AGGGAGCTCCAAAGCCGTATTTGATAATATTAATGGGATTTCCCTGGCGG
ATTTGTAGGCCAGTGATATCCCGCATCCTCTGAGTCAAGCTATCCAAAAG
TGGTCCACCGAGCGGTGTGCGGTAACTGCTCCTTGCCTCATTCTTATTAT
CGTCAAACATTTCTGTGGGTTTCAGTAGTGGCTCCGCCAAGGTTATTAGC
TGCTGGATATCCTTATCCGGCAGGATGTCATGGTACACCACTATATGGGG
CTCCAGAGAGATCTCCTCCATTTTGAGGGGAGCCAGGATCAGGAAGGCGG
AGGTGGTGCTGTTGTAGCGACAGTGGAGTTTTGAAGGGTTCGGAGAGAAC
GAGGAACGGCACAGTCTCTTGTAGCCTTCACCCAACTTGGGCGAACTGTC
TATTGCCTCGTAAGGATTGGCCTTGAATTGGTCCAGCAAGCTAATCGAAT
TGTCTGCGAGATCAGGTTGATCCAGAAGTACCTCATGGGCTTCATCTCTC
CGGTCCAATTCC
BS07776.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31017-PA | 1446 | PH4alphaNE3-RA | 651..1446 | 812..17 | 3980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:01:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaNE3-RA | 1627 | CG31017-RA | 658..1454 | 812..16 | 3985 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:01:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30605076..30605663 | 805..218 | 2940 | 100 | Minus |
3R | 32079331 | 3R | 30605704..30605884 | 229..49 | 875 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 12:01:54 has no hits.
BS07776.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:28 Download gff for
BS07776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31017-PA | 651..1446 | 17..812 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:24 Download gff for
BS07776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31017-PA | 651..1446 | 17..812 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:45:42 Download gff for
BS07776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 658..1459 | 9..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:37:41 Download gff for
BS07776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 658..1459 | 9..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:37:41 Download gff for
BS07776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30605076..30605663 | 218..805 | 100 | -> | Minus |
3R | 30605716..30605884 | 49..217 | 100 | -> | Minus |
3R | 30605939..30605976 | 9..48 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:45:42 Download gff for
BS07776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26430798..26431385 | 218..805 | 100 | -> | Minus |
arm_3R | 26431438..26431606 | 49..217 | 100 | -> | Minus |
arm_3R | 26431661..26431698 | 9..48 | 92 | | Minus |
BS07776.5prime Sequence
915 bp (769 high quality bases) assembled on 2006-01-06
> BS07776.5prime
GAAGTTATCAGTCGACATGTTTTGCAAAGTTGAAAGCACATTGAATTGGG
AGAGCCGTCAGGAATTTCTAGATACGGAATCAGCGAAAATGGACTTAATG
CAATTGGACGTCGAATTAATTGATAATCTAATGAATTACGCCGAAAAAAT
AGATGAGAAGGCTTCCCAACTAAAGAGACTAGCCCAGGAACTAAGACAGC
CTTTGCACTCTGCGAAAGGTAGAGAAGAGGAGTACTTGGGCAATCCTCTC
CACAGTTTTCCACTCATTCGACACATGTACCAGGATTGGCGGTACCTGGA
AGAGTTTATGAAGAAACCAGTGGGAGAAGAGGAAATCCAATTTCTAAGAA
GAAAGTTACCGGAACTGCCCTGGCAGGTGGACACCGAGGAAGCCAGCGTC
TCAATCTTCAGAATAGCTGAAACCTATGGAATGATGCCCTGGGATATGGC
CAACGGTCTCATCGACAATGTTCGGTTCAACTCCACACTGCCAGCTCTGG
ATTGTTTTGAAGTCGCAAAGATGTACTTCAAGTGGGGCTACTTCAAGCAG
GCATTACAGTGGATAACCATCAGCAAAGCTCGGATGAAAGAGGAGTACTC
CGGGGTTTATGAGGTGCTGGGAATGAATCGCCAGGATGTGGCCCTGCTGC
AGGCTCGCTGTTTAGTGGAATTGGACCGGAGAGATGAAGCCCATGAGGTA
CTTCTGGATCAACCTGATCTCGCAGACAATTCGATTAGCTTGCTGGACCA
ATTCAAGGCCAATCCTTACGAGGCAATAGACAGTTCGCCCAAGTTGGGTG
AAGGCTACAAGAGACTGTGCCGTTCCTCGTTCTCTCCGAACCCTTCAAAA
CTTCACTGTCGCTACAACAGCACCACCTCCGGCTTTCCTGATCCTGGCTC
CCCTCAAAATGGAGG
BS07776.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31017-PA | 1446 | PH4alphaNE3-RA | 1..865 | 17..881 | 4300 | 99.8 | Plus |
CG31017-PA | 1446 | PH4alphaNE3-RA | 868..898 | 885..915 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaNE3-RA | 1627 | CG31017-RA | 8..905 | 17..915 | 4440 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30605076..30605316 | 674..915 | 1130 | 98.8 | Plus |
3R | 32079331 | 3R | 30604827..30605020 | 481..674 | 970 | 100 | Plus |
3R | 32079331 | 3R | 30604188..30604348 | 17..177 | 805 | 100 | Plus |
3R | 32079331 | 3R | 30604405..30604558 | 176..329 | 770 | 100 | Plus |
3R | 32079331 | 3R | 30604615..30604767 | 328..480 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:40:50 has no hits.
BS07776.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:29 Download gff for
BS07776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31017-PA | 1..898 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:25 Download gff for
BS07776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31017-PA | 1..898 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:20 Download gff for
BS07776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 8..905 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:18:22 Download gff for
BS07776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 8..905 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:18:22 Download gff for
BS07776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30604188..30604348 | 17..177 | 100 | -> | Plus |
3R | 30604407..30604558 | 178..329 | 100 | -> | Plus |
3R | 30604617..30604767 | 330..480 | 100 | -> | Plus |
3R | 30604827..30605020 | 481..674 | 100 | -> | Plus |
3R | 30605077..30605316 | 675..915 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:20 Download gff for
BS07776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26429910..26430070 | 17..177 | 100 | -> | Plus |
arm_3R | 26430129..26430280 | 178..329 | 100 | -> | Plus |
arm_3R | 26430339..26430489 | 330..480 | 100 | -> | Plus |
arm_3R | 26430549..26430742 | 481..674 | 100 | -> | Plus |
arm_3R | 26430799..26431038 | 675..915 | 98 | | Plus |
BS07776.complete Sequence
1478 bp (1478 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635982
> BS07776.complete
GAAGTTATCAGTCGACATGTTTTGCAAAGTTGAAAGCACATTGAATTGGG
AGAGCCGTCAGGAATTTCTAGATACGGAATCAGCGAAAATGGACTTAATG
CAATTGGACGTCGAATTAATTGATAATCTAATGAATTACGCCGAAAAAAT
AGATGAGAAGGCTTCCCAACTAAAGAGACTAGCCCAGGAACTAAGACAGC
CTTTGCACTCTGCGAAAGGTAGAGAAGAGGAGTACTTGGGCAATCCTCTC
CACAGTTTTCCACTCATTCGACACATGTACCAGGATTGGCGGTACCTGGA
AGAGTTTATGAAGAAACCAGTGGGAGAAGAGGAAATCCAATTTCTAAGAA
GAAAGTTACCGGAACTGCCCTGGCAGGTGGACACCGAGGAAGCCAGCGTC
TCAATCTTCAGAATAGCTGAAACCTATGGAATGATGCCCTGGGATATGGC
CAACGGTCTCATCGACAATGTTCGGTTCAACTCCACACTGCCAGCTCTGG
ATTGTTTTGAAGTCGCAAAGATGTACTTCAAGTGGGGCTACTTCAAGCAG
GCATTACAGTGGATAACCATCAGCAAAGCTCGGATGAAAGAGGAGTACTC
CGGGGTTTATGAGGTGCTGGGAATGAATCGCCAGGATGTGGCCCTGCTGC
AGGCTCGCTGTTTAGTGGAATTGGACCGGAGAGATGAAGCCCATGAGGTA
CTTCTGGATCAACCTGATCTCGCAGACAATTCGATTAGCTTGCTGGACCA
ATTCAAGGCCAATCCTTACGAGGCAATAGACAGTTCGCCCAAGTTGGGTG
AAGGCTACAAGAGACTGTGCCGTTCCTCGTTCTCTCCGAACCCTTCAAAA
CTCCACTGTCGCTACAACAGCACCACCTCCGCCTTCCTGATCCTGGCTCC
CCTCAAAATGGAGGAGATCTCTCTGGAGCCCCATATAGTGGTGTACCATG
ACATCCTGCCGGATAAGGATATCCAGCAGCTAATAACCTTGGCGGAGCCA
CTACTGAAACCCACAGAAATGTTTGACGATAATAAGAATGAGGCAAGGAG
CAGTTACCGCACACCGCTCGGTGGACCACTTTTGGATAGCTTGACTCAGA
GGATGCGGGATATCACTGGCCTACAAATCCGCCAGGGAAATCCCATTAAT
ATTATCAAATACGGCTTTGGAGCTCCCTACACTAATTACTATGACTTCTT
CAAAAAGAGAAACTCGGAATCTAAAGGATTTGGTGATCGGATGGCCACCT
TTATGTTTTATCTAAATGATGCTCCTTACGGAGGTGCCACTGTCTTCCCG
CGTTTAAATGTTAAAGTACCTGCCGAACGGGGAAAAGTTCTGTTCTGGTA
CAATCTTAATGGCGACACCCACGACATGGAGCCCACCACTATGCACGCCG
CTTGTCCCGTCTTTCATGGTTCCAAATGGGTAATGACAGCCTGGATACAC
GAATATGACTAGAAGCTTTCTAGACCAT
BS07776.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaNE3-RA | 1446 | CG31017-PA | 1..1446 | 17..1462 | 7230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaNE3-RA | 1627 | CG31017-RA | 8..1454 | 17..1463 | 7235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30605076..30605663 | 674..1261 | 2940 | 100 | Plus |
3R | 32079331 | 3R | 30604827..30605020 | 481..674 | 970 | 100 | Plus |
3R | 32079331 | 3R | 30605704..30605884 | 1250..1430 | 875 | 98.9 | Plus |
3R | 32079331 | 3R | 30604188..30604348 | 17..177 | 805 | 100 | Plus |
3R | 32079331 | 3R | 30604405..30604558 | 176..329 | 770 | 100 | Plus |
3R | 32079331 | 3R | 30604615..30604767 | 328..480 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:47:05 has no hits.
BS07776.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:21 Download gff for
BS07776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 1..1446 | 17..1462 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:07 Download gff for
BS07776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 8..1459 | 17..1470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:44 Download gff for
BS07776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 15..1453 | 24..1462 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:21 Download gff for
BS07776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 8..1459 | 17..1470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:53 Download gff for
BS07776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 15..1453 | 24..1462 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:53 Download gff for
BS07776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30604195..30604348 | 24..177 | 100 | -> | Plus |
3R | 30604407..30604558 | 178..329 | 100 | -> | Plus |
3R | 30604617..30604767 | 330..480 | 100 | -> | Plus |
3R | 30604827..30605020 | 481..674 | 100 | -> | Plus |
3R | 30605077..30605663 | 675..1261 | 100 | -> | Plus |
3R | 30605716..30605884 | 1262..1430 | 100 | -> | Plus |
3R | 30605939..30605970 | 1431..1462 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:44 Download gff for
BS07776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26430339..26430489 | 330..480 | 100 | -> | Plus |
arm_3R | 26429917..26430070 | 24..177 | 100 | -> | Plus |
arm_3R | 26430129..26430280 | 178..329 | 100 | -> | Plus |
arm_3R | 26430549..26430742 | 481..674 | 100 | -> | Plus |
arm_3R | 26430799..26431385 | 675..1261 | 100 | -> | Plus |
arm_3R | 26431438..26431606 | 1262..1430 | 100 | -> | Plus |
arm_3R | 26431661..26431692 | 1431..1462 | 100 | | Plus |
BS07776.pep Sequence
Translation from 16 to 1461
> BS07776.pep
MFCKVESTLNWESRQEFLDTESAKMDLMQLDVELIDNLMNYAEKIDEKAS
QLKRLAQELRQPLHSAKGREEEYLGNPLHSFPLIRHMYQDWRYLEEFMKK
PVGEEEIQFLRRKLPELPWQVDTEEASVSIFRIAETYGMMPWDMANGLID
NVRFNSTLPALDCFEVAKMYFKWGYFKQALQWITISKARMKEEYSGVYEV
LGMNRQDVALLQARCLVELDRRDEAHEVLLDQPDLADNSISLLDQFKANP
YEAIDSSPKLGEGYKRLCRSSFSPNPSKLHCRYNSTTSAFLILAPLKMEE
ISLEPHIVVYHDILPDKDIQQLITLAEPLLKPTEMFDDNKNEARSSYRTP
LGGPLLDSLTQRMRDITGLQIRQGNPINIIKYGFGAPYTNYYDFFKKRNS
ESKGFGDRMATFMFYLNDAPYGGATVFPRLNVKVPAERGKVLFWYNLNGD
THDMEPTTMHAACPVFHGSKWVMTAWIHEYD*
BS07776.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaNE3-PA | 481 | CG31017-PA | 1..481 | 1..481 | 2560 | 100 | Plus |
CG31016-PC | 536 | CG31016-PC | 22..512 | 11..481 | 906 | 37.5 | Plus |
CG31016-PB | 536 | CG31016-PB | 22..512 | 11..481 | 906 | 37.5 | Plus |
PH4alphaPV-PA | 525 | CG31015-PA | 42..511 | 27..479 | 714 | 35.1 | Plus |
CG18233-PB | 515 | CG18233-PB | 27..498 | 13..478 | 621 | 30.6 | Plus |