Clone BS07776 Report

Search the DGRC for BS07776

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptPH4alphaNE3-RA
Protein status:BS07776.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07776.3prime Sequence

812 bp (810 high quality bases) assembled on 2006-01-06

> BS07776.3prime
ATGGTCTAGAAAGCTTCTAGTCATATTCGTGTATCCAGGCTGTCATTACC
CATTTGGAACCATGAAAGACGGGACAAGCGGCGTGCATAGTGGTGGGCTC
CATGTCGTGGGTGTCGCCATTAAGATTGTACCAGAACAGAACTTTTCCCC
GTTCGGCAGGTACTTTAACATTTAAACGCGGGAAGACAGTGGCACCTCCG
TAAGGAGCATCATTTAGATAAAACATAAAGGTGGCCATCCGATCACCAAA
TCCTTTAGATTCCGAGTTTCTCTTTTTGAAGAAGTCATAGTAATTAGTGT
AGGGAGCTCCAAAGCCGTATTTGATAATATTAATGGGATTTCCCTGGCGG
ATTTGTAGGCCAGTGATATCCCGCATCCTCTGAGTCAAGCTATCCAAAAG
TGGTCCACCGAGCGGTGTGCGGTAACTGCTCCTTGCCTCATTCTTATTAT
CGTCAAACATTTCTGTGGGTTTCAGTAGTGGCTCCGCCAAGGTTATTAGC
TGCTGGATATCCTTATCCGGCAGGATGTCATGGTACACCACTATATGGGG
CTCCAGAGAGATCTCCTCCATTTTGAGGGGAGCCAGGATCAGGAAGGCGG
AGGTGGTGCTGTTGTAGCGACAGTGGAGTTTTGAAGGGTTCGGAGAGAAC
GAGGAACGGCACAGTCTCTTGTAGCCTTCACCCAACTTGGGCGAACTGTC
TATTGCCTCGTAAGGATTGGCCTTGAATTGGTCCAGCAAGCTAATCGAAT
TGTCTGCGAGATCAGGTTGATCCAGAAGTACCTCATGGGCTTCATCTCTC
CGGTCCAATTCC

BS07776.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31017-PA 1446 PH4alphaNE3-RA 651..1446 812..17 3980 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE3-RA 1627 CG31017-RA 658..1454 812..16 3985 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30605076..30605663 805..218 2940 100 Minus
3R 32079331 3R 30605704..30605884 229..49 875 98.9 Minus
Blast to na_te.dros performed on 2015-02-03 12:01:54 has no hits.

BS07776.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:28 Download gff for BS07776.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31017-PA 651..1446 17..812 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:24 Download gff for BS07776.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31017-PA 651..1446 17..812 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:45:42 Download gff for BS07776.3prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 658..1459 9..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:37:41 Download gff for BS07776.3prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 658..1459 9..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:37:41 Download gff for BS07776.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30605076..30605663 218..805 100 -> Minus
3R 30605716..30605884 49..217 100 -> Minus
3R 30605939..30605976 9..48 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:45:42 Download gff for BS07776.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26430798..26431385 218..805 100 -> Minus
arm_3R 26431438..26431606 49..217 100 -> Minus
arm_3R 26431661..26431698 9..48 92   Minus

BS07776.5prime Sequence

915 bp (769 high quality bases) assembled on 2006-01-06

> BS07776.5prime
GAAGTTATCAGTCGACATGTTTTGCAAAGTTGAAAGCACATTGAATTGGG
AGAGCCGTCAGGAATTTCTAGATACGGAATCAGCGAAAATGGACTTAATG
CAATTGGACGTCGAATTAATTGATAATCTAATGAATTACGCCGAAAAAAT
AGATGAGAAGGCTTCCCAACTAAAGAGACTAGCCCAGGAACTAAGACAGC
CTTTGCACTCTGCGAAAGGTAGAGAAGAGGAGTACTTGGGCAATCCTCTC
CACAGTTTTCCACTCATTCGACACATGTACCAGGATTGGCGGTACCTGGA
AGAGTTTATGAAGAAACCAGTGGGAGAAGAGGAAATCCAATTTCTAAGAA
GAAAGTTACCGGAACTGCCCTGGCAGGTGGACACCGAGGAAGCCAGCGTC
TCAATCTTCAGAATAGCTGAAACCTATGGAATGATGCCCTGGGATATGGC
CAACGGTCTCATCGACAATGTTCGGTTCAACTCCACACTGCCAGCTCTGG
ATTGTTTTGAAGTCGCAAAGATGTACTTCAAGTGGGGCTACTTCAAGCAG
GCATTACAGTGGATAACCATCAGCAAAGCTCGGATGAAAGAGGAGTACTC
CGGGGTTTATGAGGTGCTGGGAATGAATCGCCAGGATGTGGCCCTGCTGC
AGGCTCGCTGTTTAGTGGAATTGGACCGGAGAGATGAAGCCCATGAGGTA
CTTCTGGATCAACCTGATCTCGCAGACAATTCGATTAGCTTGCTGGACCA
ATTCAAGGCCAATCCTTACGAGGCAATAGACAGTTCGCCCAAGTTGGGTG
AAGGCTACAAGAGACTGTGCCGTTCCTCGTTCTCTCCGAACCCTTCAAAA
CTTCACTGTCGCTACAACAGCACCACCTCCGGCTTTCCTGATCCTGGCTC
CCCTCAAAATGGAGG

BS07776.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31017-PA 1446 PH4alphaNE3-RA 1..865 17..881 4300 99.8 Plus
CG31017-PA 1446 PH4alphaNE3-RA 868..898 885..915 155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE3-RA 1627 CG31017-RA 8..905 17..915 4440 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30605076..30605316 674..915 1130 98.8 Plus
3R 32079331 3R 30604827..30605020 481..674 970 100 Plus
3R 32079331 3R 30604188..30604348 17..177 805 100 Plus
3R 32079331 3R 30604405..30604558 176..329 770 100 Plus
3R 32079331 3R 30604615..30604767 328..480 765 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:40:50 has no hits.

BS07776.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:29 Download gff for BS07776.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31017-PA 1..898 17..915 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:25 Download gff for BS07776.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31017-PA 1..898 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:20 Download gff for BS07776.5prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 8..905 17..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:18:22 Download gff for BS07776.5prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 8..905 17..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:18:22 Download gff for BS07776.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30604188..30604348 17..177 100 -> Plus
3R 30604407..30604558 178..329 100 -> Plus
3R 30604617..30604767 330..480 100 -> Plus
3R 30604827..30605020 481..674 100 -> Plus
3R 30605077..30605316 675..915 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:20 Download gff for BS07776.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26429910..26430070 17..177 100 -> Plus
arm_3R 26430129..26430280 178..329 100 -> Plus
arm_3R 26430339..26430489 330..480 100 -> Plus
arm_3R 26430549..26430742 481..674 100 -> Plus
arm_3R 26430799..26431038 675..915 98   Plus

BS07776.complete Sequence

1478 bp (1478 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635982

> BS07776.complete
GAAGTTATCAGTCGACATGTTTTGCAAAGTTGAAAGCACATTGAATTGGG
AGAGCCGTCAGGAATTTCTAGATACGGAATCAGCGAAAATGGACTTAATG
CAATTGGACGTCGAATTAATTGATAATCTAATGAATTACGCCGAAAAAAT
AGATGAGAAGGCTTCCCAACTAAAGAGACTAGCCCAGGAACTAAGACAGC
CTTTGCACTCTGCGAAAGGTAGAGAAGAGGAGTACTTGGGCAATCCTCTC
CACAGTTTTCCACTCATTCGACACATGTACCAGGATTGGCGGTACCTGGA
AGAGTTTATGAAGAAACCAGTGGGAGAAGAGGAAATCCAATTTCTAAGAA
GAAAGTTACCGGAACTGCCCTGGCAGGTGGACACCGAGGAAGCCAGCGTC
TCAATCTTCAGAATAGCTGAAACCTATGGAATGATGCCCTGGGATATGGC
CAACGGTCTCATCGACAATGTTCGGTTCAACTCCACACTGCCAGCTCTGG
ATTGTTTTGAAGTCGCAAAGATGTACTTCAAGTGGGGCTACTTCAAGCAG
GCATTACAGTGGATAACCATCAGCAAAGCTCGGATGAAAGAGGAGTACTC
CGGGGTTTATGAGGTGCTGGGAATGAATCGCCAGGATGTGGCCCTGCTGC
AGGCTCGCTGTTTAGTGGAATTGGACCGGAGAGATGAAGCCCATGAGGTA
CTTCTGGATCAACCTGATCTCGCAGACAATTCGATTAGCTTGCTGGACCA
ATTCAAGGCCAATCCTTACGAGGCAATAGACAGTTCGCCCAAGTTGGGTG
AAGGCTACAAGAGACTGTGCCGTTCCTCGTTCTCTCCGAACCCTTCAAAA
CTCCACTGTCGCTACAACAGCACCACCTCCGCCTTCCTGATCCTGGCTCC
CCTCAAAATGGAGGAGATCTCTCTGGAGCCCCATATAGTGGTGTACCATG
ACATCCTGCCGGATAAGGATATCCAGCAGCTAATAACCTTGGCGGAGCCA
CTACTGAAACCCACAGAAATGTTTGACGATAATAAGAATGAGGCAAGGAG
CAGTTACCGCACACCGCTCGGTGGACCACTTTTGGATAGCTTGACTCAGA
GGATGCGGGATATCACTGGCCTACAAATCCGCCAGGGAAATCCCATTAAT
ATTATCAAATACGGCTTTGGAGCTCCCTACACTAATTACTATGACTTCTT
CAAAAAGAGAAACTCGGAATCTAAAGGATTTGGTGATCGGATGGCCACCT
TTATGTTTTATCTAAATGATGCTCCTTACGGAGGTGCCACTGTCTTCCCG
CGTTTAAATGTTAAAGTACCTGCCGAACGGGGAAAAGTTCTGTTCTGGTA
CAATCTTAATGGCGACACCCACGACATGGAGCCCACCACTATGCACGCCG
CTTGTCCCGTCTTTCATGGTTCCAAATGGGTAATGACAGCCTGGATACAC
GAATATGACTAGAAGCTTTCTAGACCAT

BS07776.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE3-RA 1446 CG31017-PA 1..1446 17..1462 7230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE3-RA 1627 CG31017-RA 8..1454 17..1463 7235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30605076..30605663 674..1261 2940 100 Plus
3R 32079331 3R 30604827..30605020 481..674 970 100 Plus
3R 32079331 3R 30605704..30605884 1250..1430 875 98.9 Plus
3R 32079331 3R 30604188..30604348 17..177 805 100 Plus
3R 32079331 3R 30604405..30604558 176..329 770 100 Plus
3R 32079331 3R 30604615..30604767 328..480 765 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:47:05 has no hits.

BS07776.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:21 Download gff for BS07776.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 1..1446 17..1462 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:07 Download gff for BS07776.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 8..1459 17..1470 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:44 Download gff for BS07776.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 15..1453 24..1462 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:21 Download gff for BS07776.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 8..1459 17..1470 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:53 Download gff for BS07776.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 15..1453 24..1462 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:53 Download gff for BS07776.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30604195..30604348 24..177 100 -> Plus
3R 30604407..30604558 178..329 100 -> Plus
3R 30604617..30604767 330..480 100 -> Plus
3R 30604827..30605020 481..674 100 -> Plus
3R 30605077..30605663 675..1261 100 -> Plus
3R 30605716..30605884 1262..1430 100 -> Plus
3R 30605939..30605970 1431..1462 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:44 Download gff for BS07776.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26430339..26430489 330..480 100 -> Plus
arm_3R 26429917..26430070 24..177 100 -> Plus
arm_3R 26430129..26430280 178..329 100 -> Plus
arm_3R 26430549..26430742 481..674 100 -> Plus
arm_3R 26430799..26431385 675..1261 100 -> Plus
arm_3R 26431438..26431606 1262..1430 100 -> Plus
arm_3R 26431661..26431692 1431..1462 100   Plus

BS07776.pep Sequence

Translation from 16 to 1461

> BS07776.pep
MFCKVESTLNWESRQEFLDTESAKMDLMQLDVELIDNLMNYAEKIDEKAS
QLKRLAQELRQPLHSAKGREEEYLGNPLHSFPLIRHMYQDWRYLEEFMKK
PVGEEEIQFLRRKLPELPWQVDTEEASVSIFRIAETYGMMPWDMANGLID
NVRFNSTLPALDCFEVAKMYFKWGYFKQALQWITISKARMKEEYSGVYEV
LGMNRQDVALLQARCLVELDRRDEAHEVLLDQPDLADNSISLLDQFKANP
YEAIDSSPKLGEGYKRLCRSSFSPNPSKLHCRYNSTTSAFLILAPLKMEE
ISLEPHIVVYHDILPDKDIQQLITLAEPLLKPTEMFDDNKNEARSSYRTP
LGGPLLDSLTQRMRDITGLQIRQGNPINIIKYGFGAPYTNYYDFFKKRNS
ESKGFGDRMATFMFYLNDAPYGGATVFPRLNVKVPAERGKVLFWYNLNGD
THDMEPTTMHAACPVFHGSKWVMTAWIHEYD*

BS07776.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE3-PA 481 CG31017-PA 1..481 1..481 2560 100 Plus
CG31016-PC 536 CG31016-PC 22..512 11..481 906 37.5 Plus
CG31016-PB 536 CG31016-PB 22..512 11..481 906 37.5 Plus
PH4alphaPV-PA 525 CG31015-PA 42..511 27..479 714 35.1 Plus
CG18233-PB 515 CG18233-PB 27..498 13..478 621 30.6 Plus