Clone BS07777 Report

Search the DGRC for BS07777

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG6484-RA
Protein status:BS07777.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07777.3prime Sequence

865 bp (842 high quality bases) assembled on 2006-01-06

> BS07777.3prime
ATGGTCTAGAAAGCTTTCACGTCTGGCTCTTGTCATCACTTTTGACACCC
TTTCCTCCGGACAGCAGGTCCTGGATTTCGATTATTGTCTTGCCCTTGGT
CTCCGGCACGAAGAACAGAGAGTAGAAGAAGGCGATGACCGCGATCGCGG
TAAAGATCCAAAAGGTCGGACCCGGCCCGATCGAGCTCTTGAGGATTGGG
AAGAGCAGCGTGACCACGAAGGCCGACAGCCAGTTGCTGGTGCCGGCAAT
CGATCCTGCCACACTCTTCACATCCTCCGAGAAGAGTTCCGCCATCACCA
GCCACGGCACCGGTCCGAATCCAATCGAGAAGAAGATTATGAAAATGCAG
ATACTGCTGATCGGCAACCAACCGAAATTGTCCATTGAAGCCGGATCGTT
CTCCTTTAGCTGAAAGTACACGCCCATCAGTGCAGTGGACACGGCCATCA
GAACGCCAGAGATAAGGAGCAGGATGCGACGGCCAGCCTTGTCGATAATG
GCCACGGCAACCAGCGTGCTGGTCACTTGGGTGACTCCAATGATAAGCGT
GGCATCGCTGCCACTTATGTCAGAGCCCGTATCCTCGAAAATGGAGGCGG
AGTAGAAGAGAACGGCGTTGATTCCCGTCCACTGCTGGAAGACCTGCAGG
AGCACAGCGATTCCAAGACCCTTCAGGACGATGGGTCGACGAAGGGAGGA
CAGAATGTTGACCTGTGGCATATCAATCTGCTTCTGGGACTCCTCCAGGA
TCTCCTTGAGCTCGTCATCGATATCGGCATCCTTGCCGCGCAGCCACTGC
AAGGCCTTGGCGGCATCATCGTTGCGTCCCTTCATGGGCCAGTAGACGGG
TGACTCCGGCATGAA

BS07777.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6484-PA 1398 CG6484-RA 578..1398 837..17 4105 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6484-RA 1590 CG6484-RA 619..1467 865..17 4200 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17582130..17582828 17..715 3495 100 Plus
2R 25286936 2R 17583240..17583394 711..865 730 98.1 Plus
Blast to na_te.dros performed on 2015-02-12 12:31:57 has no hits.

BS07777.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:30 Download gff for BS07777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6484-PA 552..1398 17..863 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:27 Download gff for BS07777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6484-PA 552..1398 17..863 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:52:08 Download gff for BS07777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6484-RA 619..1474 9..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:38 Download gff for BS07777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6484-RA 619..1474 9..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:38 Download gff for BS07777.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17582123..17582825 9..712 99 <- Plus
2R 17583242..17583394 713..865 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:52:08 Download gff for BS07777.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13469628..13470330 9..712 99 <- Plus
arm_2R 13470747..13470899 713..865 98   Plus

BS07777.5prime Sequence

839 bp (837 high quality bases) assembled on 2006-01-06

> BS07777.5prime
GAAGTTATCAGTCGACATGTCCAAGGGATCGGTGTTGCCACAATATATTG
CTGGCTTGTCGGCCAGCTTTGGTGCCCTCTGCATGGGCGCCTCCATTGGT
TGGTCCTCGCCCGTGGAGAATATGATAACGGTGAACACGGAATACGGCTT
TCCCATTAGCTCCAGTCAGTTCGGCTGGGTATCCTCGCTGCTGACCCTGG
GCGCCACTGTGATCTGCATTCCCATTGGTTTCGCCATCGATTGGATCGGC
AGGAGACCCACTATGTTAGCCCTAATTCCACCGTACATGGTGGGCTGGGT
GCTGATGCTGTTCGCCAAAAACGTGACCATGCTCTACTTCGGACGATTCA
TTCTTGGCATGTGCGGCGGAGCCTTTTGCGTAACAGCTCCCATGTACTGT
ACAGAGATTACGGCGACAGCACTACGAGGCACCATCGGATCCTTTTTCCA
GCTGCTGATTGTGTCGGGCGTGCTGTACGGCTATTTGGTGGGCGCCTTCC
TGCCCCTGCTCACCATCAATATCCTGTGCGCTATTCTGCCCGTAATCTTT
GCTATCATACACTTCTTCATGCCGGAGTCACCCGTCTACCTGGCCATGAA
GGGACGCAACGATGATGCCGCCAAGGCCTTGCAGTGGCTGCGCGGCAAGG
ATGCCGATATCGATGACGAGCTCAAGGAGATCCTGGAGGAGTCCCAGAAG
CAGATTGATATGCCACAGGTCAACATTCTGTCCTCCCTTCGTCGACCCAT
CGTCCTGAAGGGTCTTGGAATCGCTGTGCTCCTGCAGGTCTTCCAGCAGT
GGACGGGAATCAACGCCGTTCTCTTCTACTCCGCCTCCA

BS07777.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6484-PA 1398 CG6484-RA 1..823 17..839 4115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6484-RA 1590 CG6484-RA 65..892 12..839 4125 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17583240..17583948 720..12 3530 99.9 Minus
2R 25286936 2R 17582705..17582828 839..716 620 100 Minus
Blast to na_te.dros performed on 2015-02-04 01:42:17 has no hits.

BS07777.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:31 Download gff for BS07777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6484-PA 1..822 17..838 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:28 Download gff for BS07777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6484-PA 1..822 17..838 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:43:37 Download gff for BS07777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6484-RA 65..891 12..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:31:25 Download gff for BS07777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6484-RA 65..891 12..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:31:25 Download gff for BS07777.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17582706..17582825 719..838 100 <- Minus
2R 17583242..17583948 12..718 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:43:37 Download gff for BS07777.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13470211..13470330 719..838 100 <- Minus
arm_2R 13470747..13471453 12..718 99   Minus

BS07777.complete Sequence

1430 bp (1430 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635983

> BS07777.complete
GAAGTTATCAGTCGACATGTCCAAGGGATCGGTGTTGCCACAATATATTG
CTGGCTTGTCGGCCAGCTTTGGTGCCCTCTGCATGGGCGCCTCCATTGGT
TGGTCCTCGCCCGTGGAGAATATGATAACGGTGAACACGGAATACGGCTT
TCCCATTAGCTCCAGTCAGTTCGGCTGGGTATCCTCGCTGCTGACCCTGG
GCGCCACTGTGATCTGCATTCCCATTGGTTTCGCCATCGATTGGATCGGC
AGGAGACCCACTATGTTAGCCCTAATTCCACCGTACATGGTGGGCTGGGT
GCTGATGCTGTTCGCCAAAAACGTGACCATGCTCTACTTCGGACGATTCA
TTCTTGGCATGTGCGGCGGAGCCTTTTGCGTAACAGCTCCCATGTACTGT
ACAGAGATTACGGCGACAGCACTACGAGGCACCATCGGATCCTTTTTCCA
GCTGCTGATTGTGTCGGGCGTGCTGTACGGCTATTTGGTGGGCGCCTTCC
TGCCCCTGCTCACCATCAATATCCTGTGCGCTATTCTGCCCGTAATCTTT
GCTATCATACACTTCTTCATGCCGGAGTCACCCGTCTACCTGGCCATGAA
GGGACGCAACGATGATGCCGCCAAGGCCTTGCAGTGGCTGCGCGGCAAGG
ATGCCGATATCGATGACGAGCTCAAGGAGATCCTGGAGGAGTCCCAGAAG
CAGATTGATATGCCACAGGTCAACATTCTGTCCTCCCTTCGTCGACCCAT
CGTCCTGAAGGGTCTTGGAATCGCTGTGCTCCTGCAGGTCTTCCAGCAGT
GGACGGGAATCAACGCCGTTCTCTTCTACTCCGCCTCCATTTTCGAGGAT
ACGGGCTCTGACATAAGTGGCAGCGATGCCACGCTTATCATTGGAGTCAC
CCAAGTGACCAGCACGCTGGTTGCCGTGGCCATTATCGACAAGGCTGGCC
GTCGCATCCTGCTCCTTATCTCTGGCGTTCTGATGGCCGTGTCCACTGCA
CTGATGGGCGTGTACTTTCAGCTAAAGGAGAACGATCCGGCTTCAATGGA
CAATTTCGGTTGGTTGCCGATCAGCAGTATCTGCATTTTCATAATCTTCT
TCTCGATTGGATTCGGACCGGTGCCGTGGCTGGTGATGGCGGAACTCTTC
TCGGAGGATGTGAAGAGTGTGGCAGGATCGATTGCCGGCACCAGCAACTG
GCTGTCGGCCTTCGTGGTCACGCTGCTCTTCCCAATCCTCAAGAGCTCGA
TCGGGCCGGGTCCGACCTTTTGGATCTTTACCGCGATCGCGGTCATCGCC
TTCTTCTACTCTCTGTTCTTCGTGCCGGAGACCAAGGGCAAGACAATAAT
CGAAATCCAGGACCTGCTGTCCGGAGGAAAGGGTGTCAAAAGTGATGACA
AGAGCCAGACGTGAAAGCTTTCTAGACCAT

BS07777.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6484-RA 1398 CG6484-PA 1..1398 17..1414 6990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6484-RA 1590 CG6484-RA 65..1467 12..1414 7000 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17583240..17583948 720..12 3530 99.9 Minus
2R 25286936 2R 17582130..17582828 1414..716 3495 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:06:52 has no hits.

BS07777.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:22 Download gff for BS07777.complete
Subject Subject Range Query Range Percent Splice Strand
CG6484-RA 1..1398 17..1414 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:09 Download gff for BS07777.complete
Subject Subject Range Query Range Percent Splice Strand
CG6484-RA 62..1471 12..1422 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:13 Download gff for BS07777.complete
Subject Subject Range Query Range Percent Splice Strand
CG6484-RA 70..1466 17..1413 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:22 Download gff for BS07777.complete
Subject Subject Range Query Range Percent Splice Strand
CG6484-RA 62..1471 12..1422 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:38 Download gff for BS07777.complete
Subject Subject Range Query Range Percent Splice Strand
CG6484-RA 70..1466 17..1413 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:38 Download gff for BS07777.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17582131..17582825 719..1413 100 <- Minus
2R 17583242..17583943 17..718 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:13 Download gff for BS07777.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13469636..13470330 719..1413 100 <- Minus
arm_2R 13470747..13471448 17..718 100   Minus

BS07777.pep Sequence

Translation from 16 to 1413

> BS07777.pep
MSKGSVLPQYIAGLSASFGALCMGASIGWSSPVENMITVNTEYGFPISSS
QFGWVSSLLTLGATVICIPIGFAIDWIGRRPTMLALIPPYMVGWVLMLFA
KNVTMLYFGRFILGMCGGAFCVTAPMYCTEITATALRGTIGSFFQLLIVS
GVLYGYLVGAFLPLLTINILCAILPVIFAIIHFFMPESPVYLAMKGRNDD
AAKALQWLRGKDADIDDELKEILEESQKQIDMPQVNILSSLRRPIVLKGL
GIAVLLQVFQQWTGINAVLFYSASIFEDTGSDISGSDATLIIGVTQVTST
LVAVAIIDKAGRRILLLISGVLMAVSTALMGVYFQLKENDPASMDNFGWL
PISSICIFIIFFSIGFGPVPWLVMAELFSEDVKSVAGSIAGTSNWLSAFV
VTLLFPILKSSIGPGPTFWIFTAIAVIAFFYSLFFVPETKGKTIIEIQDL
LSGGKGVKSDDKSQT*

BS07777.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6484-PA 465 CG6484-PA 1..465 1..465 2369 100 Plus
CG10960-PA 471 CG10960-PA 14..461 8..455 1239 51.7 Plus
CG10960-PC 471 CG10960-PC 14..461 8..455 1239 51.7 Plus
CG10960-PB 539 CG10960-PB 82..529 8..455 1239 51.7 Plus
sut4-PA 444 CG1380-PA 6..436 9..448 1210 51.8 Plus