Clone Sequence Records
BS07778.3prime Sequence
822 bp (821 high quality bases) assembled on 2006-01-06
> BS07778.3prime
ATGGTCTAGAAAGCTTTTACACAACGTGAATCGCATTTGGCTCTGGATCA
GCCCAAACGGGTGCGGGAATCAGGACAGCCGCCTGAACAGGAATCGCTGC
CGGCGCCGGCTGGGGAGCAGCTCCTCCAGCTCCACCACCGCCTCCGGCTC
CATTGCGTGCTCCCTTTCCACCCTTGCCGCCTTTTCCACCCTTGGAGCCA
TCCGGACCGTCTGGCCCATCGGCTCCATCAGCGCCATCTTCGCCATCGGG
CTGAGGACCCGCTGGACTCGGCGCTCCGGGCTGGCCACTGTCTCCGCTCT
GGCCGGATGTGGCCGTTCCGCCACCGCCGCCGCCTCCTCCGCCGCCACCG
CCTCCAGCGCTGCCTCCACCACCAGCTCCACCTGCTCCTCCCGCTCCGCC
TAGAAGTGCTCCAGCCTGTCCCGCTTGTCCGGCACCTCCTGCTCCACCGG
CCTCCGCCGGAGCAGGGGCATCTTGGGCGTCTACAGATTGTGAGGCAACC
AAACTCAGGGCAGCAGCTCCTGCGTCACTGGCTGTAATGCTTCCACTGCC
ACTCTGGCTTAGTTCCGGGTCCGAGTACTCTCCCTCCAGACCAGGCTGTG
GCTGCCACGAGCCATCTTCGGGGGGCGAAGGCGGCTTGTAGGAGCCATCG
TCTTCCGGCGGAGGAGGAGGTGGCTGGACTAGCAAGACAACGGGTGGAGA
CAGCAGATAGGTTCCGACTGCAGGAAGACCCACGGGCACAACATGACCAT
GGGACTCCTCCCAGTAACTGATAGCCAAGAGGCCGAGAAAAAACACTGTG
GCACGCATGTCGACTGATAACT
BS07778.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4000-PA | 792 | CG4000-RA | 1..792 | 808..17 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4000-RA | 999 | CG4000-RA | 70..862 | 808..16 | 3965 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20676442..20677206 | 30..794 | 3825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:16:03 has no hits.
BS07778.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:32 Download gff for
BS07778.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:29 Download gff for
BS07778.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:36:04 Download gff for
BS07778.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-RA | 71..866 | 13..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:49 Download gff for
BS07778.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-RA | 70..865 | 13..808 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:49 Download gff for
BS07778.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20676358..20676374 | 13..29 | 94 | <- | Plus |
| 3R | 20676442..20677205 | 30..793 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:36:04 Download gff for
BS07778.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16502080..16502096 | 13..29 | 94 | <- | Plus |
| arm_3R | 16502164..16502927 | 30..793 | 100 | <- | Plus |
BS07778.5prime Sequence
822 bp (781 high quality bases) assembled on 2006-01-06
> BS07778.5prime
GAAGTTATCAGTCGACATGCGTGCCACAGTGTTTTTTCTCGGCCTCTTGG
CTATCAGTTACTGGGAGGAGTCCCATGGTCATGTTGTGCCCGTGGGTCTT
CCTGCAGTCGGAACCTATCTGCTGTCTCCACCCGTTGTCTTGCTAGTCCA
GCCACCTCCTCCTCCGCCGGAAGACGATGGCTCCTACAAGCCGCCTTCGC
CCCCCGAAGATGGCTCGTGGCAGCCACAGCCTGGTCTGGAGGGAGAGTAC
TCGGACCCGGAACTAAGCCAGAGTGGCAGTGGAAGCATTACAGCCAGTGA
CGCAGGAGCTGCTGCCCTGAGTTTGGTTGCCTCACAATCTGTAGACGCCC
AAGATGCCCCTGCTCCGGCGGAGGCCGGTGGAGCAGGAGGTGCCGGACAA
GCGGGACAGGCTGGAGCACTTCTAGGCGGAGCGGGAGGAGCAGGTGGAGC
TGGTGGTGGAGGCAGCGCTGGAGGCGGTGGCGGCGGAGGAGGCGGCGGCG
GTGGCGGAACGGCCACATCCGGCCAGAGCGGAGACAGTGGCCAGCCCGGA
GCGCCGAGTCCAGCGGGTCCTCAGCCCGATGGCGAAGATGGCGCTGATGG
AGCCGATGGGCCAGACGGTCCGGATGGCTCCAAGGGTGGAAAAGGCGGCA
AGGGTGGAAAGGGAGCACGCAATGGAGCCGGAGGCGGTGGTGGAGCTGGA
GGAGCTGCTCCCCAGCCGGCGCCGGCAGCGATTCCTGTTCAGGCGGCTGT
CCTGATTCCCGCACCCGTTTGGGCTGATCCAGAGCCAAATGCGATTCACG
TTGTGTAAAAGCTTTCTAGACC
BS07778.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4000-PA | 792 | CG4000-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4000-RA | 999 | CG4000-RA | 70..862 | 17..809 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20676442..20677206 | 795..31 | 3825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:05:48 has no hits.
BS07778.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:33 Download gff for
BS07778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:30 Download gff for
BS07778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:54:20 Download gff for
BS07778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-RA | 71..866 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:53:33 Download gff for
BS07778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-RA | 70..865 | 17..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:53:33 Download gff for
BS07778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20676358..20676374 | 796..812 | 94 | <- | Minus |
| 3R | 20676442..20677205 | 32..795 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:54:20 Download gff for
BS07778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16502080..16502096 | 796..812 | 94 | <- | Minus |
| arm_3R | 16502164..16502927 | 32..795 | 100 | <- | Minus |
BS07778.complete Sequence
824 bp (824 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635984
> BS07778.complete
GAAGTTATCAGTCGACATGCGTGCCACAGTGTTTTTTCTCGGCCTCTTGG
CTATCAGTTACTGGGAGGAGTCCCATGGTCATGTTGTGCCCGTGGGTCTT
CCTGCAGTCGGAACCTATCTGCTGTCTCCACCCGTTGTCTTGCTAGTCCA
GCCACCTCCTCCTCCGCCGGAAGACGATGGCTCCTACAAGCCGCCTTCGC
CCCCCGAAGATGGCTCGTGGCAGCCACAGCCTGGTCTGGAGGGAGAGTAC
TCGGACCCGGAACTAAGCCAGAGTGGCAGTGGAAGCATTACAGCCAGTGA
CGCAGGAGCTGCTGCCCTGAGTTTGGTTGCCTCACAATCTGTAGACGCCC
AAGATGCCCCTGCTCCGGCGGAGGCCGGTGGAGCAGGAGGTGCCGGACAA
GCGGGACAGGCTGGAGCACTTCTAGGCGGAGCGGGAGGAGCAGGTGGAGC
TGGTGGTGGAGGCAGCGCTGGAGGCGGTGGCGGCGGAGGAGGCGGCGGCG
GTGGCGGAACGGCCACATCCGGCCAGAGCGGAGACAGTGGCCAGCCCGGA
GCGCCGAGTCCAGCGGGTCCTCAGCCCGATGGCGAAGATGGCGCTGATGG
AGCCGATGGGCCAGACGGTCCGGATGGCTCCAAGGGTGGAAAAGGCGGCA
AGGGTGGAAAGGGAGCACGCAATGGAGCCGGAGGCGGTGGTGGAGCTGGA
GGAGCTGCTCCCCAGCCGGCGCCGGCAGCGATTCCTGTTCAGGCGGCTGT
CCTGATTCCCGCACCCGTTTGGGCTGATCCAGAGCCAAATGCGATTCACG
TTGTGTAAAAGCTTTCTAGACCAT
BS07778.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4000-RA | 792 | CG4000-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4000-RA | 999 | CG4000-RA | 70..862 | 17..809 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20676442..20677206 | 795..31 | 3825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:53:41 has no hits.
BS07778.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:08 Download gff for
BS07778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-RA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:52 Download gff for
BS07778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-RA | 71..866 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:42 Download gff for
BS07778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-RA | 71..860 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:08 Download gff for
BS07778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-RA | 71..866 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:01 Download gff for
BS07778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-RA | 70..859 | 17..806 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:01 Download gff for
BS07778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20676436..20677205 | 32..801 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:42 Download gff for
BS07778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16502158..16502927 | 32..801 | 99 | <- | Minus |
BS07778.pep Sequence
Translation from 16 to 807
> BS07778.pep
MRATVFFLGLLAISYWEESHGHVVPVGLPAVGTYLLSPPVVLLVQPPPPP
PEDDGSYKPPSPPEDGSWQPQPGLEGEYSDPELSQSGSGSITASDAGAAA
LSLVASQSVDAQDAPAPAEAGGAGGAGQAGQAGALLGGAGGAGGAGGGGS
AGGGGGGGGGGGGGTATSGQSGDSGQPGAPSPAGPQPDGEDGADGADGPD
GPDGSKGGKGGKGGKGARNGAGGGGGAGGAAPQPAPAAIPVQAAVLIPAP
VWADPEPNAIHVV*
BS07778.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4000-PA | 263 | CG4000-PA | 1..263 | 1..263 | 1407 | 100 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 207..370 | 86..238 | 257 | 41 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 207..370 | 86..238 | 257 | 41 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 394..519 | 116..240 | 255 | 47 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 394..530 | 116..240 | 254 | 45.7 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 328..494 | 55..234 | 246 | 39.3 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 315..433 | 121..238 | 245 | 47.1 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 315..433 | 121..238 | 245 | 47.1 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 430..552 | 116..234 | 244 | 48 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 328..486 | 55..234 | 239 | 38.8 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 420..541 | 121..234 | 238 | 49.2 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 279..398 | 120..234 | 237 | 48 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 364..482 | 116..238 | 237 | 45.6 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 279..398 | 120..234 | 237 | 48 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 420..555 | 121..240 | 233 | 43.4 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 463..589 | 116..248 | 228 | 44.4 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 427..578 | 111..248 | 220 | 41.6 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 446..583 | 121..238 | 218 | 42.7 | Plus |
| Fib-PA | 344 | CG9888-PA | 2..102 | 130..231 | 215 | 46.1 | Plus |
| Fib-PA | 344 | CG9888-PA | 7..104 | 116..229 | 210 | 45.7 | Plus |
| CG13376-PC | 193 | CG13376-PC | 12..189 | 70..235 | 210 | 34.9 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 11..121 | 102..237 | 198 | 41 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 11..121 | 102..237 | 198 | 41 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 483..594 | 121..238 | 191 | 41.5 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 490..607 | 111..233 | 175 | 43.4 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 463..596 | 116..233 | 174 | 41 | Plus |
