Clone Sequence Records
BS07782.3prime Sequence
946 bp (905 high quality bases) assembled on 2006-01-06
> BS07782.3prime
ATGGTCTAGAAAGCTTCTAGTCAATGTTCAGCGAGGACATTAACTCTTCG
ACGGTGATATCTATATCCTGAAAGGCCACGCCCAGCCAGGCGACCACCAG
GCAGTAGTGCTGGAAAAGCTGGAGCAGCAGTTCACCCTCGTCCAGCATTT
CCAGCCGCTCGATTCGCTGCCTCTCGGCCGCCGAGATGCTCTCGTACACC
TGGACCATGTCCCAGGCGCGGGCGCCAGTCCAGCCGCTGTCCTTGAAGCG
GTTCCTCTGCGTATCCAGCGACAAGCAGGATTCAACGCCGGCCAGGCTGC
AGCCGCGTCCGCGCAGATTGTTGAGCATCACATCGCCGAAACGGTCGTTC
ATGTTGACCTGTTCGTAGTTGACAAAGACGGCTGCTTGGAACTTTTGCGC
AATCCATTTGAGCAGGTTACGGCAGTTTTGCGCCTCGATATAGACCAGAA
CGCACTCGGCGAGAAATATGGTGGGCAGGGAGTAATCAACTTCTGCCTGC
TGCAGCTTGCTGTCCACCTCGTCGAGGTTGCGCAGGTCAACGCCCATCAG
GTGGTAGCTTGGTCCATGCAGATCCGTGGGACTGAGCCGCACCTCACCAT
CCTCGTCGTGAATCCTGGCCAGCAGGGCCTTGTTGCGCTTAATTGTGTAG
CACTTGCGGGCGGTGACCGTGGGGAAGTCCAGCTCAATGAAGTTCTTCAC
CTGGTGGGCGGTGTCCCTCAGCCGGAAGTAGAGTGTGTCGAAGCCGCAGC
CCAAATTGATGATCTGGCAGTTGCCCGAGGTTTTCTTTAGAAACTTCTCG
ACGCACATCTCCACGCCCTTGACACGGGCAAAGTAGCCGCGATTGATCTC
CGGCGCCTTGCGCTCTTGGTTGCGCACAAAGTACCCGATGTAGTCGTCCT
TCCAGTAGCCCAAGCGCACCGCACATCGCTTGGCATCGCTGGCATC
BS07782.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3793-PA | 1014 | CG3793-RA | 85..1014 | 946..17 | 4600 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3793-RA | 1582 | CG3793-RA | 241..1170 | 946..17 | 4620 | 99.8 | Minus |
CG3793-RB | 1738 | CG3793-RB | 241..1182 | 946..17 | 4490 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15764781..15765217 | 786..350 | 2155 | 99.5 | Minus |
2L | 23513712 | 2L | 15765270..15765577 | 361..54 | 1540 | 100 | Minus |
2L | 23513712 | 2L | 15764460..15764621 | 946..785 | 780 | 98.8 | Minus |
2L | 23513712 | 2L | 15765675..15765711 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 18:32:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 520..556 | 779..743 | 113 | 78.4 | Minus |
BS07782.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:40 Download gff for
BS07782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-PA | 85..1014 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:41 Download gff for
BS07782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-PA | 85..1014 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:46:59 Download gff for
BS07782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 241..1173 | 14..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:02:14 Download gff for
BS07782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 241..1173 | 14..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:02:14 Download gff for
BS07782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15764460..15764621 | 785..946 | 98 | -> | Minus |
2L | 15764783..15765208 | 359..784 | 100 | -> | Minus |
2L | 15765273..15765577 | 54..358 | 100 | -> | Minus |
2L | 15765675..15765714 | 14..53 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:46:59 Download gff for
BS07782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15764460..15764621 | 785..946 | 98 | -> | Minus |
arm_2L | 15764783..15765208 | 359..784 | 100 | -> | Minus |
arm_2L | 15765273..15765577 | 54..358 | 100 | -> | Minus |
arm_2L | 15765675..15765714 | 14..53 | 97 | | Minus |
BS07782.5prime Sequence
905 bp (831 high quality bases) assembled on 2006-01-06
> BS07782.5prime
GAAGTTATCAGTCGACATGGAGCCGCCAGCGTCGGCCGGAATCGCCGGCT
CGACGCACAAGTTCCATCCGTGCGACGAGGCTGTGATAGCCACCAACGAC
GATGCCAGCGATTGCAAGCGATGTGCGGTGCGCTTGGGCTACTGGAAGGA
CGACTACATCGGGTACTTTGTGCGCAACCAAGAGCGCAAGGCGCCGGAGA
TCAATCGCGGCTACTTTGCCCGTGTCAAGGGCGTGGAGATGTGCGTCGAG
AAGTTTCTAAAGAAAACCTCGGGCAACTGCCAGATCATCAATTTGGGCTG
CGGCTTCGACACACTCTACTTCCGGCTGAGGGACACCGCCCACCAGGTGA
AGAACTTCATTGAGCTGGACTTCCCCACGGTCACCGCCCGCAAGTGCTAC
ACAATTAAGCGCAACAAGGCCCTGCTGGCCAGGATTCACGACGAGGATGG
TGAGGTGCGGCTCAGTCCCACGGATCTGCATGGACCAAGCTACCACCTGA
TGGGCGTTGACCTGCGCAACCTCGACGAGGTGGACAGCAAGCTGCAGCAG
GCAGAAGTTGATTACTCCCTGCCCACCATATTTCTCGCCGAGTGCGTTCT
GGTCTATATCGAGGCGCAAAACTGCCGTAACCTGCTCAAATGGATTGCGC
AAAAGTTCCAAGCAGCCGTCTTTGTCAACTACGAACAGGTCAACATGAAC
GACCGTTTCGGCGATGTGATGCTCAACAATCTGCGCGGACGCGGCTGCAG
CCTGGCCGGCGTTGAATCCTGCTTGTCGCTGGATACGCAGAGGAACCGCT
TCAAGGACAGCGGCTGGACTGGCGCCCGCGCCTGGGACATGGTCCAGGTG
TACGAGAGCATCTCGGCGGCCGAGAGGCAGCGAATCGAGCGGCTGGAAAT
GCTGG
BS07782.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3793-PA | 1014 | CG3793-RA | 1..889 | 17..905 | 4445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3793-RB | 1738 | CG3793-RB | 156..1045 | 16..905 | 4450 | 100 | Plus |
CG3793-RA | 1582 | CG3793-RA | 156..1045 | 16..905 | 4450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15764781..15765217 | 261..697 | 2155 | 99.5 | Plus |
2L | 23513712 | 2L | 15764375..15764621 | 16..262 | 1235 | 100 | Plus |
2L | 23513712 | 2L | 15765270..15765489 | 686..905 | 1100 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 05:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 520..556 | 268..304 | 113 | 78.4 | Plus |
BS07782.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:41 Download gff for
BS07782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-PA | 1..889 | 17..905 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:42 Download gff for
BS07782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-PA | 1..889 | 17..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:59:57 Download gff for
BS07782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 150..1045 | 9..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:50:20 Download gff for
BS07782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 150..1045 | 9..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:50:20 Download gff for
BS07782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15764369..15764621 | 9..262 | 98 | -> | Plus |
2L | 15764783..15765208 | 263..688 | 100 | -> | Plus |
2L | 15765273..15765489 | 689..905 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:59:57 Download gff for
BS07782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15764369..15764621 | 9..262 | 98 | -> | Plus |
arm_2L | 15764783..15765208 | 263..688 | 100 | -> | Plus |
arm_2L | 15765273..15765489 | 689..905 | 100 | | Plus |
BS07782.complete Sequence
1046 bp (1046 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635985
> BS07782.complete
GAAGTTATCAGTCGACATGGAGCCGCCAGCGTCGGCCGGAATCGCCGGCT
CGACGCACAAGTTCCATCCGTGCGACGAGGCTGTGATAGCCACCAACGAC
GATGCCAGCGATTGCAAGCGATGTGCGGTGCGCTTGGGCTACTGGAAGGA
CGACTACATCGGGTACTTTGTGCGCAACCAAGAGCGCAAGGCGCCGGAGA
TCAATCGCGGCTACTTTGCCCGTGTCAAGGGCGTGGAGATGTGCGTCGAG
AAGTTTCTAAAGAAAACCTCGGGCAACTGCCAGATCATCAATTTGGGCTG
CGGCTTCGACACACTCTACTTCCGGCTGAGGGACACCGCCCACCAGGTGA
AGAACTTCATTGAGCTGGACTTCCCCACGGTCACCGCCCGCAAGTGCTAC
ACAATTAAGCGCAACAAGGCCCTGCTGGCCAGGATTCACGACGAGGATGG
TGAGGTGCGGCTCAGTCCCACGGATCTGCATGGACCAAGCTACCACCTGA
TGGGCGTTGACCTGCGCAACCTCGACGAGGTGGACAGCAAGCTGCAGCAG
GCAGAAGTTGATTACTCCCTGCCCACCATATTTCTCGCCGAGTGCGTTCT
GGTCTATATCGAGGCGCAAAACTGCCGTAACCTGCTCAAATGGATTGCGC
AAAAGTTCCAAGCAGCCGTCTTTGTCAACTACGAACAGGTCAACATGAAC
GACCGTTTCGGCGATGTGATGCTCAACAATCTGCGCGGACGCGGCTGCAG
CCTGGCCGGCGTTGAATCCTGCTTGTCGCTGGATACGCAGAGGAACCGCT
TCAAGGACAGCGGCTGGACTGGCGCCCGCGCCTGGGACATGGTCCAGGTG
TACGAGAGCATCTCGGCGGCCGAGAGGCAGCGAATCGAGCGGCTGGAAAT
GCTGGACGAGGGTGAACTGCTGCTCCAGCTTTTCCAGCACTACTGCCTGG
TGGTCGCCTGGCTGGGCGTGGCCTTTCAGGATATAGATATCACCGTCGAA
GAGTTAATGTCCTCGCTGAACATTGACTAGAAGCTTTCTAGACCAT
BS07782.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3793-RA | 1014 | CG3793-PA | 1..1014 | 17..1030 | 5070 | 100 | Plus |
CG3793-RB | 1026 | CG3793-PB | 1..1026 | 17..1030 | 4915 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3793-RA | 1582 | CG3793-RA | 156..1170 | 16..1030 | 5075 | 100 | Plus |
CG3793-RB | 1738 | CG3793-RB | 156..1182 | 16..1030 | 4920 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:29:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15764781..15765217 | 261..697 | 2155 | 99.5 | Plus |
2L | 23513712 | 2L | 15765270..15765577 | 686..993 | 1540 | 100 | Plus |
2L | 23513712 | 2L | 15764375..15764621 | 16..262 | 1235 | 100 | Plus |
2L | 23513712 | 2L | 15765675..15765711 | 994..1030 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:29:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 520..556 | 268..304 | 113 | 78.4 | Plus |
BS07782.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:09 Download gff for
BS07782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 1..1014 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:05 Download gff for
BS07782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 140..1163 | 9..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:12 Download gff for
BS07782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 157..1170 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:09 Download gff for
BS07782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 140..1163 | 9..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:38 Download gff for
BS07782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 157..1170 | 17..1030 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:38 Download gff for
BS07782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15764376..15764621 | 17..262 | 100 | -> | Plus |
2L | 15764783..15765208 | 263..688 | 100 | -> | Plus |
2L | 15765273..15765577 | 689..993 | 100 | -> | Plus |
2L | 15765675..15765711 | 994..1030 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:12 Download gff for
BS07782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15764376..15764621 | 17..262 | 100 | -> | Plus |
arm_2L | 15764783..15765208 | 263..688 | 100 | -> | Plus |
arm_2L | 15765273..15765577 | 689..993 | 100 | -> | Plus |
arm_2L | 15765675..15765711 | 994..1030 | 100 | | Plus |
BS07782.pep Sequence
Translation from 16 to 1029
> BS07782.pep
MEPPASAGIAGSTHKFHPCDEAVIATNDDASDCKRCAVRLGYWKDDYIGY
FVRNQERKAPEINRGYFARVKGVEMCVEKFLKKTSGNCQIINLGCGFDTL
YFRLRDTAHQVKNFIELDFPTVTARKCYTIKRNKALLARIHDEDGEVRLS
PTDLHGPSYHLMGVDLRNLDEVDSKLQQAEVDYSLPTIFLAECVLVYIEA
QNCRNLLKWIAQKFQAAVFVNYEQVNMNDRFGDVMLNNLRGRGCSLAGVE
SCLSLDTQRNRFKDSGWTGARAWDMVQVYESISAAERQRIERLEMLDEGE
LLLQLFQHYCLVVAWLGVAFQDIDITVEELMSSLNID*
BS07782.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3793-PA | 337 | CG3793-PA | 1..337 | 1..337 | 1783 | 100 | Plus |
CG3793-PB | 341 | CG3793-PB | 1..341 | 1..337 | 1768 | 98.8 | Plus |