Clone Sequence Records
BS07783.3prime Sequence
949 bp (836 high quality bases) assembled on 2006-01-06
> BS07783.3prime
ATGGTCTAGAAAGCTTTCAGTTAATGACCTGACAAGGTGCCACATCCTCG
ATCTCCTCGCCATCGAGGGCTTTGATTTGGCACTGGCACAGGAACTGCAC
GATCTTACGCTCGGCACTTGCCCGCTCAGACGGACTCAGTCCGTCCAGCA
GCATCTGAGCCTTGGCAAGCAGGCTGTTGGCAGGCTGTGTACTTCGCTGT
TCTCGCTCCTGCTCCTGTTCGTGGTGAATCTGGGCCTGCAGCTCCCGGGA
TTGCTGAAGCACGGTCTCCATGTTGGCAATCACGGTGGTCAACAGTTTGT
CGGAGATGGCGGCAGACGGTACAGAGTCCCCAGGGAGAGAGGAGGACTCC
TCTACGACGGGATTTACCCTGGCGATTGTGTGAATTATTTCCTCACTGGT
GGCCGGCGTGGTGGTGGTCACCTGGAGCTGCTGTGGTGGCTCCAAGTCCT
GCCGTGCCGTCGCTTCGCTGAGGATAAAATCGTACGGCGTTGCTTGCTCC
GCCTCCGATAGTATCTCAATCTCTTCATCGTAGGCCAACTCAAGATCATC
CTCCAGATCGTCGTTGTCCGTACTGTAGGGGTAATCAGCGCCCCAGATTT
GCTCACCACTGGAGATCACCATTCCCTCCGGCTGTTTGCTGGTCTTTCCC
GAAGGATTTCCTGCTTTGGGTGGTCGTCCACGTCGCTTGATGTTCTCCAA
AACCAGGGGCACTCCTTTGCGGAAGTGGCGGCCCAGAAAGAGAAGGTCGT
TAAAGTACCTCCACGTGATGGGCGTGGACTGGTTGATCTGATGACTGCGG
AACTCCCGCCCGAAACGATCACGCAGCTTCTTCCAGCGGGTGTAGCAAAG
TTCCTCCGACACATTTAGGTTTTCAGAAATCTCTCGTCAGGCTTCGTTTT
TCGCTGCTAGGTTCTTGGAGACTCTGATCTTGTGACGATCATACAGCAC
BS07783.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10949-PA | 1380 | CG10949-RA | 448..1380 | 949..17 | 4615 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:10:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10949-RB | 1689 | CG10949-RB | 662..1596 | 949..15 | 4645 | 99.8 | Minus |
CG10949-RA | 1539 | CG10949-RA | 512..1446 | 949..15 | 4645 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20415266..20416107 | 15..856 | 4195 | 99.9 | Plus |
2L | 23513712 | 2L | 20416164..20416257 | 856..949 | 455 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:10:14 has no hits.
BS07783.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:42 Download gff for
BS07783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-PA | 448..1380 | 17..949 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:44 Download gff for
BS07783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-PA | 448..1380 | 17..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:40:15 Download gff for
BS07783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 512..1448 | 11..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:49 Download gff for
BS07783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 512..1448 | 11..949 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:49 Download gff for
BS07783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20415264..20416106 | 11..855 | 99 | <- | Plus |
2L | 20416164..20416257 | 856..949 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:40:15 Download gff for
BS07783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20415264..20416106 | 11..855 | 99 | <- | Plus |
arm_2L | 20416164..20416257 | 856..949 | 98 | | Plus |
BS07783.5prime Sequence
890 bp (748 high quality bases) assembled on 2006-01-06
> BS07783.5prime
GAAGTTATCAGTCGACATGGACGACGATGAGCTGATTAAATTGATAGAGA
GACACCCGATCCTGTACGACAAGGACTGCGCGAGGAGCGTGAAGAATGCG
GCGCAAAAGGACGCGGCCTGGAAGGCCATCTCCCAGAAGTTAGGAGCCTC
GGAACGGGCGTGCATTACGCGCTGGAAGAGCATTCGCGATCGTTTCGGCA
AGGAGTTTCGCCGTTTCCAGGAGCGTCCGGATGAGCCCACCTACTGGGAC
ATGTTTCCGCGACTGCTCTTTCTCAAGGATCACTACAAACAGGGACTGGC
AAGGAACGAGAGTCTCGACGGGATGCGTTTTGAGCCCAGGGAGCGGAAAA
AGCGCACAAAAGTGGACATGGAGCAGGAGAGGCGGAGAAAGGACGAGGAG
GAGGAGGACTCCCAGGATGACCTGCTGAACGAGCAGCTCATTGAGCTGGT
CAAGTCTCATCCCGTGCTGTATGATCGTCACAAGATCAGAGTCTCCAAGA
ACCTAGCAGCGAAAAACGAAGCCTGGCGAGAGATTTCTGAAAACCTAAAT
GTGTCGGAGGAACTTTGCTACAACCGCTGGAAGAAGCTGCGTGATCGTTT
CGGGCGGGAGTTCCGCAGTCATCAGATCAACCAGTCCACGCCCATCACGT
GGAGGTACTTTAACGACCTTCTCTTTCTGGGCCGCCACTTCCGCAAAGGA
GTGCCCCTGGTTTTGGAGAACATCAAGCGACGTGGACGACCACCCAAAGC
AGGAAATCCTTCGGGAAAGACCAGCAAACAGCCGGAGGGAATGGTGATCT
CCAGTGGTGAGCAAATCTGGGGCGCTGATTACCCCTACAGTACGGACAAC
GACGATCTGGAAGATGATCTTGAGTTGGCCTACGATGAAG
BS07783.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10949-PA | 1380 | CG10949-RA | 1..874 | 17..890 | 4345 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10949-RB | 1689 | CG10949-RB | 215..1088 | 17..890 | 4355 | 99.9 | Plus |
CG10949-RA | 1539 | CG10949-RA | 65..938 | 17..890 | 4355 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:13:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20416164..20416704 | 557..17 | 2705 | 100 | Minus |
2L | 23513712 | 2L | 20415774..20416107 | 890..557 | 1655 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:13:46 has no hits.
BS07783.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:43 Download gff for
BS07783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:45 Download gff for
BS07783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:18:15 Download gff for
BS07783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 62..938 | 12..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:52:45 Download gff for
BS07783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 62..938 | 12..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:52:45 Download gff for
BS07783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20415774..20416106 | 558..890 | 99 | <- | Minus |
2L | 20416164..20416707 | 12..557 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:18:15 Download gff for
BS07783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20415774..20416106 | 558..890 | 99 | <- | Minus |
arm_2L | 20416164..20416707 | 12..557 | 99 | | Minus |
BS07783.complete Sequence
1412 bp (1412 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635986
> BS07783.complete
GAAGTTATCAGTCGACATGGACGACGATGAGCTGATTAAATTGATAGAGA
GACACCCGATCCTGTACGACAAGGACTGCGCGAGGAGCGTGAAGAATGCG
GCGCAAAAGGACGCGGCCTGGAAGGCCATCTCCCAGAAGTTAGGAGCCTC
GGAACGGGCGTGCATTACGCGCTGGAAGAGCATTCGCGATCGTTTCGGCA
AGGAGTTTCGCCGTTTCCAGGAGCGTCCGGATGAGCCCACCTACTGGGAC
ATGTTTCCGCGACTGCTCTTTCTCAAGGATCACTACAAACAGGGACTGGC
AAGGAACGAGAGTCTCGACGGGATGCGTTTTGAGCCCAGGGAGCGGAAAA
AGCGCACAAAAGTGGACATGGAGCAGGAGAGGCGGAGAAAGGACGAGGAG
GAGGAGGACTCCCAGGATGACCTGCTGAACGAGCAGCTCATTGAGCTGGT
CAAGTCTCATCCCGTGCTGTATGATCGTCACAAGATCAGAGTCTCCAAGA
ACCTAGCAGCGAAAAACGAAGCCTGGCGAGAGATTTCTGAAAACCTAAAT
GTGTCGGAGGAACTTTGCTACAACCGCTGGAAGAAGCTGCGTGATCGTTT
CGGGCGGGAGTTCCGCAGTCATCAGATCAACCAGTCCACGCCCATCACGT
GGAGGTACTTTAACGACCTTCTCTTTCTGGGCCGCCACTTCCGCAAAGGA
GTGCCCCTGGTTTTGGAGAACATCAAGCGACGTGGACGACCACCCAAAGC
AGGAAATCCTTCGGGAAAGACCAGCAAACAGCCGGAGGGAATGGTGATCT
CCAGTGGTGAGCAAATCTGGGGCGCTGATTACCCCTACAGTACGGACAAC
GACGATCTGGAGGATGATCTTGAGTTGGCCTACGATGAAGAGATTGAGAT
ACTATCGGAGGCGGAGCAAGCAACGCCGTACGATTTTATCCTCAGCGAAG
CGACGGCACGGCAGGACTTGGAGCCACCACAGCAGCTCCAGGTGACCACC
ACCACGCCGGCCACCAGTGAGGAAATAATTCACACAATCGCCAGGGTAAA
TCCCGTCGTAGAGGAGTCCTCCTCTCTCCCTGGGGACTCTGTACCGTCTG
CCGCCATCTCCGACAAACTGTTGACCACCGTGATTGCCAACATGGAGACC
GTGCTTCAGCAATCCCGGGAGCTGCAGGCCCAGATTCACCACGAACAGGA
GCAGGAGCGAGAACAGCGAAGTACACAGCCTGCCAACAGCCTGCTTGCCA
AGGCTCAGATGCTGCTGGACGGACTGAGTCCGTCTGAGCGGGCAAGTGCC
GAGCGTAAGATCGTGCAGTTCCTGTGCCAGTGCCAAATCAAAGCCCTCGA
TGGCGAGGAGATCGAGGATGTGGCACCTTGTCAGGTCATTAACTGAAAGC
TTTCTAGACCAT
BS07783.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10949-RB | 1380 | CG10949-PB | 1..1380 | 17..1396 | 6900 | 100 | Plus |
CG10949-RA | 1380 | CG10949-PA | 1..1380 | 17..1396 | 6900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10949-RB | 1689 | CG10949-RB | 215..1596 | 17..1398 | 6910 | 100 | Plus |
CG10949-RA | 1539 | CG10949-RA | 65..1446 | 17..1398 | 6910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20415266..20416107 | 1398..557 | 4210 | 100 | Minus |
2L | 23513712 | 2L | 20416164..20416704 | 557..17 | 2705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:43:02 has no hits.
BS07783.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:11 Download gff for
BS07783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 1..1380 | 17..1396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:55 Download gff for
BS07783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 212..1598 | 12..1402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:43 Download gff for
BS07783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 65..1443 | 17..1395 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:11 Download gff for
BS07783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 212..1598 | 12..1402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:54 Download gff for
BS07783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 65..1443 | 17..1395 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:54 Download gff for
BS07783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20415269..20416106 | 558..1395 | 100 | <- | Minus |
2L | 20416164..20416704 | 17..557 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:43 Download gff for
BS07783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20415269..20416106 | 558..1395 | 100 | <- | Minus |
arm_2L | 20416164..20416704 | 17..557 | 100 | | Minus |
BS07783.pep Sequence
Translation from 16 to 1395
> BS07783.pep
MDDDELIKLIERHPILYDKDCARSVKNAAQKDAAWKAISQKLGASERACI
TRWKSIRDRFGKEFRRFQERPDEPTYWDMFPRLLFLKDHYKQGLARNESL
DGMRFEPRERKKRTKVDMEQERRRKDEEEEDSQDDLLNEQLIELVKSHPV
LYDRHKIRVSKNLAAKNEAWREISENLNVSEELCYNRWKKLRDRFGREFR
SHQINQSTPITWRYFNDLLFLGRHFRKGVPLVLENIKRRGRPPKAGNPSG
KTSKQPEGMVISSGEQIWGADYPYSTDNDDLEDDLELAYDEEIEILSEAE
QATPYDFILSEATARQDLEPPQQLQVTTTTPATSEEIIHTIARVNPVVEE
SSSLPGDSVPSAAISDKLLTTVIANMETVLQQSRELQAQIHHEQEQEREQ
RSTQPANSLLAKAQMLLDGLSPSERASAERKIVQFLCQCQIKALDGEEIE
DVAPCQVIN*
BS07783.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10949-PB | 459 | CG10949-PB | 1..459 | 1..459 | 2381 | 100 | Plus |
CG10949-PA | 459 | CG10949-PA | 1..459 | 1..459 | 2381 | 100 | Plus |
Adf1-PC | 262 | CG15845-PC | 9..245 | 129..391 | 173 | 25.7 | Plus |
Adf1-PB | 253 | CG15845-PB | 2..236 | 131..391 | 170 | 25.6 | Plus |
Adf1-PA | 253 | CG15845-PA | 2..236 | 131..391 | 170 | 25.6 | Plus |