Clone BS07783 Report

Search the DGRC for BS07783

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG10949-RA
Protein status:BS07783.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07783.3prime Sequence

949 bp (836 high quality bases) assembled on 2006-01-06

> BS07783.3prime
ATGGTCTAGAAAGCTTTCAGTTAATGACCTGACAAGGTGCCACATCCTCG
ATCTCCTCGCCATCGAGGGCTTTGATTTGGCACTGGCACAGGAACTGCAC
GATCTTACGCTCGGCACTTGCCCGCTCAGACGGACTCAGTCCGTCCAGCA
GCATCTGAGCCTTGGCAAGCAGGCTGTTGGCAGGCTGTGTACTTCGCTGT
TCTCGCTCCTGCTCCTGTTCGTGGTGAATCTGGGCCTGCAGCTCCCGGGA
TTGCTGAAGCACGGTCTCCATGTTGGCAATCACGGTGGTCAACAGTTTGT
CGGAGATGGCGGCAGACGGTACAGAGTCCCCAGGGAGAGAGGAGGACTCC
TCTACGACGGGATTTACCCTGGCGATTGTGTGAATTATTTCCTCACTGGT
GGCCGGCGTGGTGGTGGTCACCTGGAGCTGCTGTGGTGGCTCCAAGTCCT
GCCGTGCCGTCGCTTCGCTGAGGATAAAATCGTACGGCGTTGCTTGCTCC
GCCTCCGATAGTATCTCAATCTCTTCATCGTAGGCCAACTCAAGATCATC
CTCCAGATCGTCGTTGTCCGTACTGTAGGGGTAATCAGCGCCCCAGATTT
GCTCACCACTGGAGATCACCATTCCCTCCGGCTGTTTGCTGGTCTTTCCC
GAAGGATTTCCTGCTTTGGGTGGTCGTCCACGTCGCTTGATGTTCTCCAA
AACCAGGGGCACTCCTTTGCGGAAGTGGCGGCCCAGAAAGAGAAGGTCGT
TAAAGTACCTCCACGTGATGGGCGTGGACTGGTTGATCTGATGACTGCGG
AACTCCCGCCCGAAACGATCACGCAGCTTCTTCCAGCGGGTGTAGCAAAG
TTCCTCCGACACATTTAGGTTTTCAGAAATCTCTCGTCAGGCTTCGTTTT
TCGCTGCTAGGTTCTTGGAGACTCTGATCTTGTGACGATCATACAGCAC

BS07783.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10949-PA 1380 CG10949-RA 448..1380 949..17 4615 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10949-RB 1689 CG10949-RB 662..1596 949..15 4645 99.8 Minus
CG10949-RA 1539 CG10949-RA 512..1446 949..15 4645 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20415266..20416107 15..856 4195 99.9 Plus
2L 23513712 2L 20416164..20416257 856..949 455 98.9 Plus
Blast to na_te.dros performed on 2015-02-11 16:10:14 has no hits.

BS07783.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:42 Download gff for BS07783.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10949-PA 448..1380 17..949 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:44 Download gff for BS07783.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10949-PA 448..1380 17..949 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:40:15 Download gff for BS07783.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 512..1448 11..949 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:49 Download gff for BS07783.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 512..1448 11..949 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:49 Download gff for BS07783.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20415264..20416106 11..855 99 <- Plus
2L 20416164..20416257 856..949 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:40:15 Download gff for BS07783.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20415264..20416106 11..855 99 <- Plus
arm_2L 20416164..20416257 856..949 98   Plus

BS07783.5prime Sequence

890 bp (748 high quality bases) assembled on 2006-01-06

> BS07783.5prime
GAAGTTATCAGTCGACATGGACGACGATGAGCTGATTAAATTGATAGAGA
GACACCCGATCCTGTACGACAAGGACTGCGCGAGGAGCGTGAAGAATGCG
GCGCAAAAGGACGCGGCCTGGAAGGCCATCTCCCAGAAGTTAGGAGCCTC
GGAACGGGCGTGCATTACGCGCTGGAAGAGCATTCGCGATCGTTTCGGCA
AGGAGTTTCGCCGTTTCCAGGAGCGTCCGGATGAGCCCACCTACTGGGAC
ATGTTTCCGCGACTGCTCTTTCTCAAGGATCACTACAAACAGGGACTGGC
AAGGAACGAGAGTCTCGACGGGATGCGTTTTGAGCCCAGGGAGCGGAAAA
AGCGCACAAAAGTGGACATGGAGCAGGAGAGGCGGAGAAAGGACGAGGAG
GAGGAGGACTCCCAGGATGACCTGCTGAACGAGCAGCTCATTGAGCTGGT
CAAGTCTCATCCCGTGCTGTATGATCGTCACAAGATCAGAGTCTCCAAGA
ACCTAGCAGCGAAAAACGAAGCCTGGCGAGAGATTTCTGAAAACCTAAAT
GTGTCGGAGGAACTTTGCTACAACCGCTGGAAGAAGCTGCGTGATCGTTT
CGGGCGGGAGTTCCGCAGTCATCAGATCAACCAGTCCACGCCCATCACGT
GGAGGTACTTTAACGACCTTCTCTTTCTGGGCCGCCACTTCCGCAAAGGA
GTGCCCCTGGTTTTGGAGAACATCAAGCGACGTGGACGACCACCCAAAGC
AGGAAATCCTTCGGGAAAGACCAGCAAACAGCCGGAGGGAATGGTGATCT
CCAGTGGTGAGCAAATCTGGGGCGCTGATTACCCCTACAGTACGGACAAC
GACGATCTGGAAGATGATCTTGAGTTGGCCTACGATGAAG

BS07783.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10949-PA 1380 CG10949-RA 1..874 17..890 4345 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10949-RB 1689 CG10949-RB 215..1088 17..890 4355 99.9 Plus
CG10949-RA 1539 CG10949-RA 65..938 17..890 4355 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20416164..20416704 557..17 2705 100 Minus
2L 23513712 2L 20415774..20416107 890..557 1655 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 06:13:46 has no hits.

BS07783.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:43 Download gff for BS07783.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10949-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:45 Download gff for BS07783.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10949-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:18:15 Download gff for BS07783.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 62..938 12..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:52:45 Download gff for BS07783.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 62..938 12..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:52:45 Download gff for BS07783.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20415774..20416106 558..890 99 <- Minus
2L 20416164..20416707 12..557 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:18:15 Download gff for BS07783.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20415774..20416106 558..890 99 <- Minus
arm_2L 20416164..20416707 12..557 99   Minus

BS07783.complete Sequence

1412 bp (1412 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635986

> BS07783.complete
GAAGTTATCAGTCGACATGGACGACGATGAGCTGATTAAATTGATAGAGA
GACACCCGATCCTGTACGACAAGGACTGCGCGAGGAGCGTGAAGAATGCG
GCGCAAAAGGACGCGGCCTGGAAGGCCATCTCCCAGAAGTTAGGAGCCTC
GGAACGGGCGTGCATTACGCGCTGGAAGAGCATTCGCGATCGTTTCGGCA
AGGAGTTTCGCCGTTTCCAGGAGCGTCCGGATGAGCCCACCTACTGGGAC
ATGTTTCCGCGACTGCTCTTTCTCAAGGATCACTACAAACAGGGACTGGC
AAGGAACGAGAGTCTCGACGGGATGCGTTTTGAGCCCAGGGAGCGGAAAA
AGCGCACAAAAGTGGACATGGAGCAGGAGAGGCGGAGAAAGGACGAGGAG
GAGGAGGACTCCCAGGATGACCTGCTGAACGAGCAGCTCATTGAGCTGGT
CAAGTCTCATCCCGTGCTGTATGATCGTCACAAGATCAGAGTCTCCAAGA
ACCTAGCAGCGAAAAACGAAGCCTGGCGAGAGATTTCTGAAAACCTAAAT
GTGTCGGAGGAACTTTGCTACAACCGCTGGAAGAAGCTGCGTGATCGTTT
CGGGCGGGAGTTCCGCAGTCATCAGATCAACCAGTCCACGCCCATCACGT
GGAGGTACTTTAACGACCTTCTCTTTCTGGGCCGCCACTTCCGCAAAGGA
GTGCCCCTGGTTTTGGAGAACATCAAGCGACGTGGACGACCACCCAAAGC
AGGAAATCCTTCGGGAAAGACCAGCAAACAGCCGGAGGGAATGGTGATCT
CCAGTGGTGAGCAAATCTGGGGCGCTGATTACCCCTACAGTACGGACAAC
GACGATCTGGAGGATGATCTTGAGTTGGCCTACGATGAAGAGATTGAGAT
ACTATCGGAGGCGGAGCAAGCAACGCCGTACGATTTTATCCTCAGCGAAG
CGACGGCACGGCAGGACTTGGAGCCACCACAGCAGCTCCAGGTGACCACC
ACCACGCCGGCCACCAGTGAGGAAATAATTCACACAATCGCCAGGGTAAA
TCCCGTCGTAGAGGAGTCCTCCTCTCTCCCTGGGGACTCTGTACCGTCTG
CCGCCATCTCCGACAAACTGTTGACCACCGTGATTGCCAACATGGAGACC
GTGCTTCAGCAATCCCGGGAGCTGCAGGCCCAGATTCACCACGAACAGGA
GCAGGAGCGAGAACAGCGAAGTACACAGCCTGCCAACAGCCTGCTTGCCA
AGGCTCAGATGCTGCTGGACGGACTGAGTCCGTCTGAGCGGGCAAGTGCC
GAGCGTAAGATCGTGCAGTTCCTGTGCCAGTGCCAAATCAAAGCCCTCGA
TGGCGAGGAGATCGAGGATGTGGCACCTTGTCAGGTCATTAACTGAAAGC
TTTCTAGACCAT

BS07783.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10949-RB 1380 CG10949-PB 1..1380 17..1396 6900 100 Plus
CG10949-RA 1380 CG10949-PA 1..1380 17..1396 6900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10949-RB 1689 CG10949-RB 215..1596 17..1398 6910 100 Plus
CG10949-RA 1539 CG10949-RA 65..1446 17..1398 6910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20415266..20416107 1398..557 4210 100 Minus
2L 23513712 2L 20416164..20416704 557..17 2705 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:43:02 has no hits.

BS07783.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:11 Download gff for BS07783.complete
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 1..1380 17..1396 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:55 Download gff for BS07783.complete
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 212..1598 12..1402 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:43 Download gff for BS07783.complete
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 65..1443 17..1395 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:11 Download gff for BS07783.complete
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 212..1598 12..1402 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:54 Download gff for BS07783.complete
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 65..1443 17..1395 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:54 Download gff for BS07783.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20415269..20416106 558..1395 100 <- Minus
2L 20416164..20416704 17..557 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:43 Download gff for BS07783.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20415269..20416106 558..1395 100 <- Minus
arm_2L 20416164..20416704 17..557 100   Minus

BS07783.pep Sequence

Translation from 16 to 1395

> BS07783.pep
MDDDELIKLIERHPILYDKDCARSVKNAAQKDAAWKAISQKLGASERACI
TRWKSIRDRFGKEFRRFQERPDEPTYWDMFPRLLFLKDHYKQGLARNESL
DGMRFEPRERKKRTKVDMEQERRRKDEEEEDSQDDLLNEQLIELVKSHPV
LYDRHKIRVSKNLAAKNEAWREISENLNVSEELCYNRWKKLRDRFGREFR
SHQINQSTPITWRYFNDLLFLGRHFRKGVPLVLENIKRRGRPPKAGNPSG
KTSKQPEGMVISSGEQIWGADYPYSTDNDDLEDDLELAYDEEIEILSEAE
QATPYDFILSEATARQDLEPPQQLQVTTTTPATSEEIIHTIARVNPVVEE
SSSLPGDSVPSAAISDKLLTTVIANMETVLQQSRELQAQIHHEQEQEREQ
RSTQPANSLLAKAQMLLDGLSPSERASAERKIVQFLCQCQIKALDGEEIE
DVAPCQVIN*

BS07783.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10949-PB 459 CG10949-PB 1..459 1..459 2381 100 Plus
CG10949-PA 459 CG10949-PA 1..459 1..459 2381 100 Plus
Adf1-PC 262 CG15845-PC 9..245 129..391 173 25.7 Plus
Adf1-PB 253 CG15845-PB 2..236 131..391 170 25.6 Plus
Adf1-PA 253 CG15845-PA 2..236 131..391 170 25.6 Plus