Clone BS07784 Report

Search the DGRC for BS07784

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG8026-RB
Protein status:BS07784.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07784.3prime Sequence

932 bp (801 high quality bases) assembled on 2006-01-06

> BS07784.3prime
ATGGTCTAGAAAGCTTCTAGCTGGTCAGCTTCTCCCAGATCAGCATGACC
ATGCAGATGTTGGGCGTGACGTGGACCAGGTAGGGCACCAGGCCCTTATA
GAAACCTCGCATGCGCTCGTACCTCCAAGTCTGTTTGATGCAGTCCCAGG
TGCCGTTGTATCGGTGATGGTGGTCCTGCAGCCGTGCCCGGACCACCTGG
TACGGGTAGGTGGCCGCCGCTGCGATCAGCTTGGAGACAGCCGCGAAGGC
CAAGTACTCGGTGGTGGCCAGCTTCGTGTCGATGGGCAGTTTGCGATATT
CGTTGTAGGCGTTCTTCAGCTCCTCGTAGGTCATGAACTGGATGGCTCCG
TGGGAGACGCCCAACATGCCGGGAACAAAGCCGCGGTACAGGCCACGGAT
TCCCTCCTCCTTGTATATCTGGCCCAAGGCGTGGATCATGCCCCTGTACT
CGGCACTACTCGCGGCATCGCACTGCAGGCAGAGACGCGTCTTCACCACC
CAGATGGGGTTGGTCAGCAGCAGGGTGAGAATTCCCGACTCAGCAGCTGC
AAGCATGTTCATTGTGGGGCCCAATGGCATGGTCGTGTTTCCTCCTTGGA
TAAATGTCTTAATGGTGTTGTAGAACATGAAGTACAGGCCCCAAGAGGAG
CCCGATCCCCAGACATTGGGGGTGACGCCTTTGTAGAGTCCGCGGAAGCC
CTCTTGCCGGAAAATCGTGGTGAAGGCGCTGCTCAGTCCCCGGTATTGCG
GCACCGTAGCTGTCCGGCCATCGTTAACTGCGAATCGAATCTTGATCAAA
TCCAGGGGATGTAGAATGAGTGTGGACACCACTCCGCCGGATACTCCGGC
AACCAAATGCTCGTACTTGACGTGTGCGAATACGTTGAATTTCTTGGGAC
TGCCCCGTGACTGTGCCCTGATCGGATTCATG

BS07784.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8026-PB 915 CG8026-RB 1..915 931..17 4500 99.6 Minus
CG8026-PA 1083 CG8026-RA 1..882 931..50 4335 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG45085-RA 2926 CG45085-RA 668..1583 931..16 4535 99.7 Minus
CG8026-RB 2926 CG8026-RB 668..1583 931..16 4535 99.7 Minus
CG45085-RB 1941 CG45085-RB 668..1510 931..89 4020 98.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9188653..9189008 268..623 1780 100 Plus
2R 25286936 2R 9188013..9188266 16..269 1270 100 Plus
2R 25286936 2R 9189067..9189224 624..781 790 100 Plus
2R 25286936 2R 9191276..9191429 778..931 725 98.1 Plus
Blast to na_te.dros performed on 2015-02-11 09:55:12 has no hits.

BS07784.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:44 Download gff for BS07784.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8026-PB 1..915 17..931 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:46 Download gff for BS07784.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8026-PB 1..915 17..931 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:58:53 Download gff for BS07784.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 667..1583 16..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:52 Download gff for BS07784.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 667..1583 16..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:52 Download gff for BS07784.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9189067..9189220 624..777 100 <- Plus
2R 9191276..9191429 778..932 97   Plus
2R 9188013..9188265 16..268 100 <- Plus
2R 9188654..9189008 269..623 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:58:53 Download gff for BS07784.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5075518..5075770 16..268 100 <- Plus
arm_2R 5076159..5076513 269..623 100 <- Plus
arm_2R 5076572..5076725 624..777 100 <- Plus
arm_2R 5078781..5078934 778..932 97   Plus

BS07784.5prime Sequence

895 bp (806 high quality bases) assembled on 2006-01-06

> BS07784.5prime
GAAGTTATCAGTCGACATGAATCCGATCAAGGCACAGTCAACGGGCAGTC
CCAAGAAATTCAACGTATTCGCACACGTCAAGTACGAGCATTTGGTTGCC
GGAGTATCCGGCGGAGTGGTGTCCACACTCATTCTACATCCCCTGGATTT
GATCAAGATTCGATTCGCAGTTAACGATGGCCGGACAGCTACGGTGCCGC
AATACCGGGGACTGAGCAGCGCCTTCACCACGATTTTCCGGCAAGAGGGC
TTCCGCGGACTCTACAAAGGCGTCACCCCCAATGTCTGGGGATCGGGCTC
CTCTTGGGGCCTGTACTTCATGTTCTACAACACCATTAAGACATTTATCC
AAGGAGGAAACACGACCATGCCATTGGGCCCCACAATGAACATGCTTGCA
GCTGCTGAGTCGGGAATTCTCACCCTGCTGCTGACCAACCCCATCTGGGT
GGTGAAGACGCGTCTCTGCCTGCAGTGCGATGCCGCGAGTAGTGCCGAGT
ACAGGGGCATGATCCACGCCTTGGGCCAGATATACAAGGAGGAGGGAATC
CGTGGCCTGTACCGCGGCTTTGTTCCCGGCATGTTGGGCGTCTCCCACGG
AGCCATCCAGTTCATGACCTACGAGGAGCTGAAGAACGCCTACAACGAAT
ATCGCANACTGCCCATCGACACGAAGCTGGCCACCACCGAGTACTTGGCC
TTCGCGGCTGTCTCCAAGCTGATCGCAGCGGCGGCCACCTACCCGTACCA
GGTGGTCCGGGCACGGCTGCAGGACCACCATCACCGATACAACGGCACCT
GGGACTGCATCAAACAGACTTGGAGGTACGAGCGCATGCGAGGTTTCTAT
AAGGGCCTGGTGCCCTACCTGGTCCACGTCACGCCCAACATCTGC

BS07784.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8026-PA 1083 CG8026-RA 1..879 17..895 4376 99.8 Plus
CG8026-PB 915 CG8026-RB 1..879 17..895 4376 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG45085-RA 2926 CG45085-RA 668..1546 17..895 4384 99.9 Plus
CG8026-RB 2926 CG8026-RB 668..1546 17..895 4384 99.9 Plus
CG45085-RB 1941 CG45085-RB 668..1510 17..859 4054 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9188653..9189008 680..325 1769 99.7 Minus
2R 25286936 2R 9188050..9188266 895..679 1085 100 Minus
2R 25286936 2R 9189067..9189224 324..167 790 100 Minus
2R 25286936 2R 9191276..9191429 170..17 770 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:04:44 has no hits.

BS07784.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:45 Download gff for BS07784.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8026-PA 1..879 17..895 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:48 Download gff for BS07784.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8026-PB 1..879 17..895 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:28:57 Download gff for BS07784.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 662..1546 9..895 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:41 Download gff for BS07784.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 662..1546 9..895 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:41 Download gff for BS07784.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9188050..9188265 680..895 100 <- Minus
2R 9188654..9189008 325..679 99 <- Minus
2R 9189067..9189220 171..324 100 <- Minus
2R 9191276..9191435 9..170 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:28:57 Download gff for BS07784.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5075555..5075770 680..895 100 <- Minus
arm_2R 5076159..5076513 325..679 99 <- Minus
arm_2R 5076572..5076725 171..324 100 <- Minus
arm_2R 5078781..5078940 9..170 97   Minus

BS07784.complete Sequence

947 bp (947 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635987

> BS07784.complete
GAAGTTATCAGTCGACATGAATCCGATCAAGGCACAGTCAACGGGCAGTC
CCAAGAAATTCAACGTATTCGCACACGTCAAGTACGAGCATTTGGTTGCC
GGAGTATCCGGCGGAGTGGTGTCCACACTCATTCTACATCCCCTGGATTT
GATCAAGATTCGATTCGCAGTTAACGATGGCCGGACAGCTACGGTGCCGC
AATACCGGGGACTGAGCAGCGCCTTCACCACGATTTTCCGGCAAGAGGGC
TTCCGCGGACTCTACAAAGGCGTCACCCCCAATGTCTGGGGATCGGGCTC
CTCTTGGGGCCTGTACTTCATGTTCTACAACACCATTAAGACATTTATCC
AAGGAGGAAACACGACCATGCCATTGGGCCCCACAATGAACATGCTTGCA
GCTGCTGAGTCGGGAATTCTCACCCTGCTGCTGACCAACCCCATCTGGGT
GGTGAAGACGCGTCTCTGCCTGCAGTGCGATGCCGCGAGTAGTGCCGAGT
ACAGGGGCATGATCCACGCCTTGGGCCAGATATACAAGGAGGAGGGAATC
CGTGGCCTGTACCGCGGCTTTGTTCCCGGCATGTTGGGCGTCTCCCACGG
AGCCATCCAGTTCATGACCTACGAGGAGCTGAAGAACGCCTACAACGAAT
ATCGCAAACTGCCCATCGACACGAAGCTGGCCACCACCGAGTACTTGGCC
TTCGCGGCTGTCTCCAAGCTGATCGCAGCGGCGGCCACCTACCCGTACCA
GGTGGTCCGGGCACGGCTGCAGGACCACCATCACCGATACAACGGCACCT
GGGACTGCATCAAACAGACTTGGAGGTACGAGCGCATGCGAGGTTTCTAT
AAGGGCCTGGTGCCCTACCTGGTCCACGTCACGCCCAACATCTGCATGGT
CATGCTGATCTGGGAGAAGCTGACCAGCTAGAAGCTTTCTAGACCAT

BS07784.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8026-RB 915 CG8026-PB 1..915 17..931 4575 100 Plus
CG8026-RD 969 CG8026-PD 1..843 17..859 4065 98.8 Plus
CG8026-RC 612 CG8026-PC 1..612 320..931 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG45085-RA 2926 CG45085-RA 668..1583 17..932 4580 100 Plus
CG8026-RB 2926 CG8026-RB 668..1583 17..932 4580 100 Plus
CG45085-RB 1941 CG45085-RB 668..1510 17..859 4065 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9188653..9189008 680..325 1780 100 Minus
2R 25286936 2R 9188013..9188266 932..679 1270 100 Minus
2R 25286936 2R 9189067..9189224 324..167 790 100 Minus
2R 25286936 2R 9191276..9191429 170..17 770 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:57:38 has no hits.

BS07784.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:12 Download gff for BS07784.complete
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 1..915 17..931 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:57 Download gff for BS07784.complete
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 661..1582 9..932 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:25 Download gff for BS07784.complete
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 668..1582 17..931 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:12 Download gff for BS07784.complete
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 661..1582 9..932 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:35 Download gff for BS07784.complete
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 668..1582 17..931 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:35 Download gff for BS07784.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9189067..9189220 171..324 100 <- Minus
2R 9191276..9191429 17..170 100   Minus
2R 9188014..9188265 680..931 100 <- Minus
2R 9188654..9189008 325..679 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:25 Download gff for BS07784.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5075519..5075770 680..931 100 <- Minus
arm_2R 5076159..5076513 325..679 100 <- Minus
arm_2R 5076572..5076725 171..324 100 <- Minus
arm_2R 5078781..5078934 17..170 100   Minus

BS07784.pep Sequence

Translation from 16 to 930

> BS07784.pep
MNPIKAQSTGSPKKFNVFAHVKYEHLVAGVSGGVVSTLILHPLDLIKIRF
AVNDGRTATVPQYRGLSSAFTTIFRQEGFRGLYKGVTPNVWGSGSSWGLY
FMFYNTIKTFIQGGNTTMPLGPTMNMLAAAESGILTLLLTNPIWVVKTRL
CLQCDAASSAEYRGMIHALGQIYKEEGIRGLYRGFVPGMLGVSHGAIQFM
TYEELKNAYNEYRKLPIDTKLATTEYLAFAAVSKLIAAAATYPYQVVRAR
LQDHHHRYNGTWDCIKQTWRYERMRGFYKGLVPYLVHVTPNICMVMLIWE
KLTS*

BS07784.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8026-PB 304 CG8026-PB 1..304 1..304 1612 100 Plus
CG8026-PD 322 CG8026-PD 1..303 1..303 1493 93.4 Plus
CG8026-PC 203 CG8026-PC 1..203 102..304 1081 100 Plus
Rim2-PC 358 CG18317-PC 73..338 35..300 343 30.1 Plus
Rim2-PD 272 CG18317-PD 7..252 55..300 338 30.5 Plus
CG8026-PC 203 CG8026-PC 24..188 25..193 169 27.9 Plus