Clone Sequence Records
BS07784.3prime Sequence
932 bp (801 high quality bases) assembled on 2006-01-06
> BS07784.3prime
ATGGTCTAGAAAGCTTCTAGCTGGTCAGCTTCTCCCAGATCAGCATGACC
ATGCAGATGTTGGGCGTGACGTGGACCAGGTAGGGCACCAGGCCCTTATA
GAAACCTCGCATGCGCTCGTACCTCCAAGTCTGTTTGATGCAGTCCCAGG
TGCCGTTGTATCGGTGATGGTGGTCCTGCAGCCGTGCCCGGACCACCTGG
TACGGGTAGGTGGCCGCCGCTGCGATCAGCTTGGAGACAGCCGCGAAGGC
CAAGTACTCGGTGGTGGCCAGCTTCGTGTCGATGGGCAGTTTGCGATATT
CGTTGTAGGCGTTCTTCAGCTCCTCGTAGGTCATGAACTGGATGGCTCCG
TGGGAGACGCCCAACATGCCGGGAACAAAGCCGCGGTACAGGCCACGGAT
TCCCTCCTCCTTGTATATCTGGCCCAAGGCGTGGATCATGCCCCTGTACT
CGGCACTACTCGCGGCATCGCACTGCAGGCAGAGACGCGTCTTCACCACC
CAGATGGGGTTGGTCAGCAGCAGGGTGAGAATTCCCGACTCAGCAGCTGC
AAGCATGTTCATTGTGGGGCCCAATGGCATGGTCGTGTTTCCTCCTTGGA
TAAATGTCTTAATGGTGTTGTAGAACATGAAGTACAGGCCCCAAGAGGAG
CCCGATCCCCAGACATTGGGGGTGACGCCTTTGTAGAGTCCGCGGAAGCC
CTCTTGCCGGAAAATCGTGGTGAAGGCGCTGCTCAGTCCCCGGTATTGCG
GCACCGTAGCTGTCCGGCCATCGTTAACTGCGAATCGAATCTTGATCAAA
TCCAGGGGATGTAGAATGAGTGTGGACACCACTCCGCCGGATACTCCGGC
AACCAAATGCTCGTACTTGACGTGTGCGAATACGTTGAATTTCTTGGGAC
TGCCCCGTGACTGTGCCCTGATCGGATTCATG
BS07784.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8026-PB | 915 | CG8026-RB | 1..915 | 931..17 | 4500 | 99.6 | Minus |
CG8026-PA | 1083 | CG8026-RA | 1..882 | 931..50 | 4335 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45085-RA | 2926 | CG45085-RA | 668..1583 | 931..16 | 4535 | 99.7 | Minus |
CG8026-RB | 2926 | CG8026-RB | 668..1583 | 931..16 | 4535 | 99.7 | Minus |
CG45085-RB | 1941 | CG45085-RB | 668..1510 | 931..89 | 4020 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9188653..9189008 | 268..623 | 1780 | 100 | Plus |
2R | 25286936 | 2R | 9188013..9188266 | 16..269 | 1270 | 100 | Plus |
2R | 25286936 | 2R | 9189067..9189224 | 624..781 | 790 | 100 | Plus |
2R | 25286936 | 2R | 9191276..9191429 | 778..931 | 725 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:55:12 has no hits.
BS07784.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:44 Download gff for
BS07784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-PB | 1..915 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:46 Download gff for
BS07784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-PB | 1..915 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:58:53 Download gff for
BS07784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 667..1583 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:52 Download gff for
BS07784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 667..1583 | 16..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:52 Download gff for
BS07784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9189067..9189220 | 624..777 | 100 | <- | Plus |
2R | 9191276..9191429 | 778..932 | 97 | | Plus |
2R | 9188013..9188265 | 16..268 | 100 | <- | Plus |
2R | 9188654..9189008 | 269..623 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:58:53 Download gff for
BS07784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5075518..5075770 | 16..268 | 100 | <- | Plus |
arm_2R | 5076159..5076513 | 269..623 | 100 | <- | Plus |
arm_2R | 5076572..5076725 | 624..777 | 100 | <- | Plus |
arm_2R | 5078781..5078934 | 778..932 | 97 | | Plus |
BS07784.5prime Sequence
895 bp (806 high quality bases) assembled on 2006-01-06
> BS07784.5prime
GAAGTTATCAGTCGACATGAATCCGATCAAGGCACAGTCAACGGGCAGTC
CCAAGAAATTCAACGTATTCGCACACGTCAAGTACGAGCATTTGGTTGCC
GGAGTATCCGGCGGAGTGGTGTCCACACTCATTCTACATCCCCTGGATTT
GATCAAGATTCGATTCGCAGTTAACGATGGCCGGACAGCTACGGTGCCGC
AATACCGGGGACTGAGCAGCGCCTTCACCACGATTTTCCGGCAAGAGGGC
TTCCGCGGACTCTACAAAGGCGTCACCCCCAATGTCTGGGGATCGGGCTC
CTCTTGGGGCCTGTACTTCATGTTCTACAACACCATTAAGACATTTATCC
AAGGAGGAAACACGACCATGCCATTGGGCCCCACAATGAACATGCTTGCA
GCTGCTGAGTCGGGAATTCTCACCCTGCTGCTGACCAACCCCATCTGGGT
GGTGAAGACGCGTCTCTGCCTGCAGTGCGATGCCGCGAGTAGTGCCGAGT
ACAGGGGCATGATCCACGCCTTGGGCCAGATATACAAGGAGGAGGGAATC
CGTGGCCTGTACCGCGGCTTTGTTCCCGGCATGTTGGGCGTCTCCCACGG
AGCCATCCAGTTCATGACCTACGAGGAGCTGAAGAACGCCTACAACGAAT
ATCGCANACTGCCCATCGACACGAAGCTGGCCACCACCGAGTACTTGGCC
TTCGCGGCTGTCTCCAAGCTGATCGCAGCGGCGGCCACCTACCCGTACCA
GGTGGTCCGGGCACGGCTGCAGGACCACCATCACCGATACAACGGCACCT
GGGACTGCATCAAACAGACTTGGAGGTACGAGCGCATGCGAGGTTTCTAT
AAGGGCCTGGTGCCCTACCTGGTCCACGTCACGCCCAACATCTGC
BS07784.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8026-PA | 1083 | CG8026-RA | 1..879 | 17..895 | 4376 | 99.8 | Plus |
CG8026-PB | 915 | CG8026-RB | 1..879 | 17..895 | 4376 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45085-RA | 2926 | CG45085-RA | 668..1546 | 17..895 | 4384 | 99.9 | Plus |
CG8026-RB | 2926 | CG8026-RB | 668..1546 | 17..895 | 4384 | 99.9 | Plus |
CG45085-RB | 1941 | CG45085-RB | 668..1510 | 17..859 | 4054 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:04:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9188653..9189008 | 680..325 | 1769 | 99.7 | Minus |
2R | 25286936 | 2R | 9188050..9188266 | 895..679 | 1085 | 100 | Minus |
2R | 25286936 | 2R | 9189067..9189224 | 324..167 | 790 | 100 | Minus |
2R | 25286936 | 2R | 9191276..9191429 | 170..17 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:04:44 has no hits.
BS07784.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:45 Download gff for
BS07784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:48 Download gff for
BS07784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-PB | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:28:57 Download gff for
BS07784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 662..1546 | 9..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:41 Download gff for
BS07784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 662..1546 | 9..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:41 Download gff for
BS07784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9188050..9188265 | 680..895 | 100 | <- | Minus |
2R | 9188654..9189008 | 325..679 | 99 | <- | Minus |
2R | 9189067..9189220 | 171..324 | 100 | <- | Minus |
2R | 9191276..9191435 | 9..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:28:57 Download gff for
BS07784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5075555..5075770 | 680..895 | 100 | <- | Minus |
arm_2R | 5076159..5076513 | 325..679 | 99 | <- | Minus |
arm_2R | 5076572..5076725 | 171..324 | 100 | <- | Minus |
arm_2R | 5078781..5078940 | 9..170 | 97 | | Minus |
BS07784.complete Sequence
947 bp (947 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635987
> BS07784.complete
GAAGTTATCAGTCGACATGAATCCGATCAAGGCACAGTCAACGGGCAGTC
CCAAGAAATTCAACGTATTCGCACACGTCAAGTACGAGCATTTGGTTGCC
GGAGTATCCGGCGGAGTGGTGTCCACACTCATTCTACATCCCCTGGATTT
GATCAAGATTCGATTCGCAGTTAACGATGGCCGGACAGCTACGGTGCCGC
AATACCGGGGACTGAGCAGCGCCTTCACCACGATTTTCCGGCAAGAGGGC
TTCCGCGGACTCTACAAAGGCGTCACCCCCAATGTCTGGGGATCGGGCTC
CTCTTGGGGCCTGTACTTCATGTTCTACAACACCATTAAGACATTTATCC
AAGGAGGAAACACGACCATGCCATTGGGCCCCACAATGAACATGCTTGCA
GCTGCTGAGTCGGGAATTCTCACCCTGCTGCTGACCAACCCCATCTGGGT
GGTGAAGACGCGTCTCTGCCTGCAGTGCGATGCCGCGAGTAGTGCCGAGT
ACAGGGGCATGATCCACGCCTTGGGCCAGATATACAAGGAGGAGGGAATC
CGTGGCCTGTACCGCGGCTTTGTTCCCGGCATGTTGGGCGTCTCCCACGG
AGCCATCCAGTTCATGACCTACGAGGAGCTGAAGAACGCCTACAACGAAT
ATCGCAAACTGCCCATCGACACGAAGCTGGCCACCACCGAGTACTTGGCC
TTCGCGGCTGTCTCCAAGCTGATCGCAGCGGCGGCCACCTACCCGTACCA
GGTGGTCCGGGCACGGCTGCAGGACCACCATCACCGATACAACGGCACCT
GGGACTGCATCAAACAGACTTGGAGGTACGAGCGCATGCGAGGTTTCTAT
AAGGGCCTGGTGCCCTACCTGGTCCACGTCACGCCCAACATCTGCATGGT
CATGCTGATCTGGGAGAAGCTGACCAGCTAGAAGCTTTCTAGACCAT
BS07784.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:57:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8026-RB | 915 | CG8026-PB | 1..915 | 17..931 | 4575 | 100 | Plus |
CG8026-RD | 969 | CG8026-PD | 1..843 | 17..859 | 4065 | 98.8 | Plus |
CG8026-RC | 612 | CG8026-PC | 1..612 | 320..931 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:57:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45085-RA | 2926 | CG45085-RA | 668..1583 | 17..932 | 4580 | 100 | Plus |
CG8026-RB | 2926 | CG8026-RB | 668..1583 | 17..932 | 4580 | 100 | Plus |
CG45085-RB | 1941 | CG45085-RB | 668..1510 | 17..859 | 4065 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9188653..9189008 | 680..325 | 1780 | 100 | Minus |
2R | 25286936 | 2R | 9188013..9188266 | 932..679 | 1270 | 100 | Minus |
2R | 25286936 | 2R | 9189067..9189224 | 324..167 | 790 | 100 | Minus |
2R | 25286936 | 2R | 9191276..9191429 | 170..17 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:57:38 has no hits.
BS07784.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:12 Download gff for
BS07784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 1..915 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:57 Download gff for
BS07784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 661..1582 | 9..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:25 Download gff for
BS07784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 668..1582 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:12 Download gff for
BS07784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 661..1582 | 9..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:35 Download gff for
BS07784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 668..1582 | 17..931 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:35 Download gff for
BS07784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9189067..9189220 | 171..324 | 100 | <- | Minus |
2R | 9191276..9191429 | 17..170 | 100 | | Minus |
2R | 9188014..9188265 | 680..931 | 100 | <- | Minus |
2R | 9188654..9189008 | 325..679 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:25 Download gff for
BS07784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5075519..5075770 | 680..931 | 100 | <- | Minus |
arm_2R | 5076159..5076513 | 325..679 | 100 | <- | Minus |
arm_2R | 5076572..5076725 | 171..324 | 100 | <- | Minus |
arm_2R | 5078781..5078934 | 17..170 | 100 | | Minus |
BS07784.pep Sequence
Translation from 16 to 930
> BS07784.pep
MNPIKAQSTGSPKKFNVFAHVKYEHLVAGVSGGVVSTLILHPLDLIKIRF
AVNDGRTATVPQYRGLSSAFTTIFRQEGFRGLYKGVTPNVWGSGSSWGLY
FMFYNTIKTFIQGGNTTMPLGPTMNMLAAAESGILTLLLTNPIWVVKTRL
CLQCDAASSAEYRGMIHALGQIYKEEGIRGLYRGFVPGMLGVSHGAIQFM
TYEELKNAYNEYRKLPIDTKLATTEYLAFAAVSKLIAAAATYPYQVVRAR
LQDHHHRYNGTWDCIKQTWRYERMRGFYKGLVPYLVHVTPNICMVMLIWE
KLTS*
BS07784.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8026-PB | 304 | CG8026-PB | 1..304 | 1..304 | 1612 | 100 | Plus |
CG8026-PD | 322 | CG8026-PD | 1..303 | 1..303 | 1493 | 93.4 | Plus |
CG8026-PC | 203 | CG8026-PC | 1..203 | 102..304 | 1081 | 100 | Plus |
Rim2-PC | 358 | CG18317-PC | 73..338 | 35..300 | 343 | 30.1 | Plus |
Rim2-PD | 272 | CG18317-PD | 7..252 | 55..300 | 338 | 30.5 | Plus |
CG8026-PC | 203 | CG8026-PC | 24..188 | 25..193 | 169 | 27.9 | Plus |