Clone BS07785 Report

Search the DGRC for BS07785

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:77
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG5805-RA
Protein status:BS07785.pep: full length peptide match
Sequenced Size:1052

Clone Sequence Records

BS07785.3prime Sequence

870 bp (737 high quality bases) assembled on 2006-01-06

> BS07785.3prime
ATGGTCTAGAAAGCTTTTCCTTGCGGATCTGATGCTTGTACTGCTCGTCC
ACCGCAATGCGCTTGATCGTCTCGTAACCTAGAATAATGCTGCATGAGAA
GGCTGCCGACTGCACCAGGCGGGCGGACAGTCCCTTGAAGAAGCAGTTCA
GCTTCTCCTCCTGCCACAGCTCCCGGAAGGCGACGCTCATCGAGTCCAAG
CGGTGGACCTGCAGACGGGCACGCACTATATCTAAAGGATTGGTTAGTAT
TGTCGTTGTGAAGCCACCTAAACTGCCGGCCACGCACTGGATAAACAGAT
GGGACACCCAAACGGGGCAGATGCGGAACAGTTCGTCCTGATAGAGATGA
TAGAAGGCCCACCACATGGCCGAATTCGGTACGTAGGCCATCAGGCTGGC
GGTGTAGCCGCGGTAGAAGCCCCGGAAGCCATCGCGCCGCATTATCTCCC
TGCCAATGTCCATGGAAATGTGCAGGCGACTGCGACCGGGCCATGACTTA
ATGCCCAGCGGATTGATATCGCCCTTGGAACCGGCATGGGCCGACATCCC
GAGCACCATGGCGTGCTGCGATATCACATCGAAAGGAACTATGATGGTCT
GGCCCACCAGCGAGGCGCAACCGCCGCCGGCGAGGGCCTTCATTCGATGC
CCAGCACCCAGATCGTTGAGCACATGGCGCACGCCCTCGTAGGTGCTTAT
GTAAAAGACGCCGGACACTATTTGCACGGAGGAGATCCAGAAACCTCTAT
ACAGACCGGGCACTCCCTCCGATCGGTAGATCTTCATGGCGCAATCCACC
ATGCCCTTGTACACATCGCTCTTGTGCTGCACCTGCAATTGCGTCTTGAT
CACGGTCAGCGGGAATAGGC

BS07785.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-PA 1020 CG5805-RA 167..1014 870..23 4215 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-RB 2151 CG5805-RB 454..1301 870..23 4225 99.9 Minus
CG5805-RA 2036 CG5805-RA 524..1371 870..23 4225 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24785973..24786506 337..870 2670 100 Plus
3R 32079331 3R 24785402..24785591 23..212 935 99.5 Plus
3R 32079331 3R 24785785..24785915 207..337 655 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:55:53 has no hits.

BS07785.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:46 Download gff for BS07785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5805-PA 167..1020 16..870 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:50 Download gff for BS07785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5805-PA 167..1020 16..870 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:06:49 Download gff for BS07785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 524..1379 14..870 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:45 Download gff for BS07785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 524..1379 14..870 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:45 Download gff for BS07785.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24785394..24785587 14..208 97 <- Plus
3R 24785787..24785914 209..336 100 <- Plus
3R 24785973..24786506 337..870 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:06:49 Download gff for BS07785.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20611116..20611309 14..208 97 <- Plus
arm_3R 20611509..20611636 209..336 100 <- Plus
arm_3R 20611695..20612228 337..870 100   Plus

BS07785.5prime Sequence

911 bp (790 high quality bases) assembled on 2006-01-06

> BS07785.5prime
GAAGTTATCAGTCGACATGACGGAAAGCAGCAGTAGCACCAAATCCCGCC
TAGCGGTGGCGCCCACCGGAGTTGGAGGAGCAGCCGAGGGAGCCACATAC
ATACGCACCATCGAATGGGACATGATGAACAAGACCAAGTTCTTTCCGCT
CTCCATGCTCAGCTCGTTTTCGGTGCGCTGCTGCCTATTCCCGCTGACCG
TGATCAAGACGCAATTGCAGGTGCAGCACAAGAGCGATGTGTACAAGGGC
ATGGTGGATTGCGCCATGAAGATCTACCGATCGGAGGGAGTGCCCGGTCT
GTATAGAGGTTTCTGGATCTCCTCCGTGCAAATAGTGTCCGGCGTCTTTT
ACATAAGCACCTACGAGGGCGTGCGCCATGTGCTCAACGATCTGGGTGCT
GGGCATCGAATGAAGGCCCTCGCCGGCGGCGGTTGCGCCTCGCTGGTGGG
CCAGACCATCATAGTTCCTTTCGATGTGATATCGCAGCACGCCATGGTGC
TCGGGATGTCGGCCCATGCCGGTTCCAAGGGCGATATCAATCCGCTGGGC
ATTAAGTCATGGCCCGGTCGCAGTCGCCTGCACATTTCCATGGACATTGG
CAGGGAGATAATGCGGCGCGATGGCTTCCGGGGCTTCTACCGCGGCTACA
CCGCCAGCCTGATGGCCTACGTACCGAATTCGGCCATGTGGTGGGCCTTC
TATCATCTCTATCAGGACGAACTGTTCCGCATCTGCCCCGTTTGGGTGTC
CCATCTGTTTATCCAGTGCGTGGCCGGCAGTTTAGGTGGCTTCAACACGA
CAATACTAACCAATCCTTTAGATATAGTGCGTGCCCGTCTGCAGGTCCAC
CGCTTGGACTCGATGAGCGTCGCCTTCCGGGAGCTGTGGCAGGAGGAGAA
GCTGGACTGCT

BS07785.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-PA 1020 CG5805-RA 1..895 17..911 4400 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-RB 2151 CG5805-RB 288..1182 17..911 4430 99.7 Plus
CG5805-RA 2036 CG5805-RA 358..1252 17..911 4430 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24785973..24786672 716..17 3500 100 Minus
3R 32079331 3R 24785785..24785915 846..716 625 98.5 Minus
3R 32079331 3R 24785521..24785591 911..841 340 98.6 Minus
Blast to na_te.dros performed on 2015-02-04 01:44:32 has no hits.

BS07785.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:48 Download gff for BS07785.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5805-PA 1..895 17..911 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:51 Download gff for BS07785.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5805-PA 1..895 17..911 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:43:56 Download gff for BS07785.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 350..1252 6..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:31:39 Download gff for BS07785.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 350..1252 6..911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:31:39 Download gff for BS07785.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24785521..24785587 845..911 98 <- Minus
3R 24785787..24785914 717..844 98 <- Minus
3R 24785973..24786680 6..716 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:43:56 Download gff for BS07785.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20611243..20611309 845..911 98 <- Minus
arm_3R 20611509..20611636 717..844 98 <- Minus
arm_3R 20611695..20612402 6..716 99   Minus

BS07785.complete Sequence

1052 bp assembled on 2008-08-14

GenBank Submission: FJ635988

> BS07785.complete
GAAGTTATCAGTCGACATGACGGAAAGCAGCAGTAGCACCAAATCCCGCC
TAGCGGTGGCGCCCACCGGAGTTGGAGGAGCAGCCGAGGGAGCCACATAC
ATACGCACCATCGAATGGGACATGATGAACAAGACCAAGTTCTTTCCGCT
CTCCATGCTCAGCTCGTTTTCGGTGCGCTGCTGCCTATTCCCGCTGACCG
TGATCAAGACGCAATTGCAGGTGCAGCACAAGAGCGATGTGTACAAGGGC
ATGGTGGATTGCGCCATGAAGATCTACCGATCGGAGGGAGTGCCCGGTCT
GTATAGAGGTTTCTGGATCTCCTCCGTGCAAATAGTGTCCGGCGTCTTTT
ACATAAGCACCTACGAGGGCGTGCGCCATGTGCTCAACGATCTGGGTGCT
GGGCATCGAATGAAGGCCCTCGCCGGCGGCGGTTGCGCCTCGCTGGTGGG
CCAGACCATCATAGTTCCTTTCGATGTGATATCGCAGCACGCCATGGTGC
TCGGGATGTCGGCCCATGCCGGTTCCAAGGGCGATATCAATCCGCTGGGC
ATTAAGTCATGGCCCGGTCGCAGTCGCCTGCACATTTCCATGGACATTGG
CAGGGAGATAATGCGGCGCGATGGCTTCCGGGGCTTCTACCGCGGCTACA
CCGCCAGCCTGATGGCCTACGTACCGAATTCGGCCATGTGGTGGGCCTTC
TATCATCTCTATCAGGACGAACTGTTCCGCATCTGCCCCGTTTGGGTGTC
CCATCTGTTTATCCAGTGCGTGGCCGGCAGTTTAGGTGGCTTCACAACGA
CAATACTAACCAATCCTTTAGATATAGTGCGTGCCCGTCTGCAGGTCCAC
CGCTTGGACTCGATGAGCGTCGCCTTCCGGGAGCTGTGGCAGGAGGAGAA
GCTGAACTGCTTCTTCAAGGGACTGTCCGCCCGCCTGGTGCAGTCGGCAG
CCTTCTCATTCAGCATTATTCTAGGTTACGAGACGATCAAGCGCATTGCG
GTGGACGAGCAGTACAAGCATCAGATCCGCTGGTAAAAGCTTTCTAGACC
AT

BS07785.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-RB 1020 CG5805-PB 1..1020 17..1036 5100 100 Plus
CG5805-RA 1020 CG5805-PA 1..1020 17..1036 5100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-RB 2151 CG5805-RB 288..1308 17..1037 5105 100 Plus
CG5805-RA 2036 CG5805-RA 358..1378 17..1037 5105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24785973..24786672 716..17 3500 100 Minus
3R 32079331 3R 24785395..24785591 1037..841 985 100 Minus
3R 32079331 3R 24785785..24785915 846..716 655 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:24:08 has no hits.

BS07785.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:06 Download gff for BS07785.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 349..1377 6..1037 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:08 Download gff for BS07785.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 358..1375 17..1034 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:50 Download gff for BS07785.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 357..1374 17..1034 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:54 Download gff for BS07785.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 358..1375 17..1034 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:54 Download gff for BS07785.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24785787..24785914 717..844 100 <- Minus
3R 24785398..24785587 845..1034 100 <- Minus
3R 24785973..24786672 17..716 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:08 Download gff for BS07785.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20611120..20611309 845..1034 100 <- Minus
arm_3R 20611509..20611636 717..844 100 <- Minus
arm_3R 20611695..20612394 17..716 100   Minus

BS07785.pep Sequence

Translation from 16 to 1035

> BS07785.pep
MTESSSSTKSRLAVAPTGVGGAAEGATYIRTIEWDMMNKTKFFPLSMLSS
FSVRCCLFPLTVIKTQLQVQHKSDVYKGMVDCAMKIYRSEGVPGLYRGFW
ISSVQIVSGVFYISTYEGVRHVLNDLGAGHRMKALAGGGCASLVGQTIIV
PFDVISQHAMVLGMSAHAGSKGDINPLGIKSWPGRSRLHISMDIGREIMR
RDGFRGFYRGYTASLMAYVPNSAMWWAFYHLYQDELFRICPVWVSHLFIQ
CVAGSLGGFTTTILTNPLDIVRARLQVHRLDSMSVAFRELWQEEKLNCFF
KGLSARLVQSAAFSFSIILGYETIKRIAVDEQYKHQIRW*

BS07785.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-PB 339 CG5805-PB 1..339 1..339 1779 100 Plus
CG5805-PA 339 CG5805-PA 1..339 1..339 1779 100 Plus
aralar1-PB 679 CG2139-PB 344..603 57..327 188 23.7 Plus
aralar1-PD 682 CG2139-PD 347..606 57..327 188 23.7 Plus
aralar1-PA 682 CG2139-PA 347..606 57..327 188 23.7 Plus
aralar1-PB 679 CG2139-PB 333..518 138..337 157 27.2 Plus
aralar1-PD 682 CG2139-PD 336..521 138..337 157 27.2 Plus