Clone Sequence Records
BS07785.3prime Sequence
870 bp (737 high quality bases) assembled on 2006-01-06
> BS07785.3prime
ATGGTCTAGAAAGCTTTTCCTTGCGGATCTGATGCTTGTACTGCTCGTCC
ACCGCAATGCGCTTGATCGTCTCGTAACCTAGAATAATGCTGCATGAGAA
GGCTGCCGACTGCACCAGGCGGGCGGACAGTCCCTTGAAGAAGCAGTTCA
GCTTCTCCTCCTGCCACAGCTCCCGGAAGGCGACGCTCATCGAGTCCAAG
CGGTGGACCTGCAGACGGGCACGCACTATATCTAAAGGATTGGTTAGTAT
TGTCGTTGTGAAGCCACCTAAACTGCCGGCCACGCACTGGATAAACAGAT
GGGACACCCAAACGGGGCAGATGCGGAACAGTTCGTCCTGATAGAGATGA
TAGAAGGCCCACCACATGGCCGAATTCGGTACGTAGGCCATCAGGCTGGC
GGTGTAGCCGCGGTAGAAGCCCCGGAAGCCATCGCGCCGCATTATCTCCC
TGCCAATGTCCATGGAAATGTGCAGGCGACTGCGACCGGGCCATGACTTA
ATGCCCAGCGGATTGATATCGCCCTTGGAACCGGCATGGGCCGACATCCC
GAGCACCATGGCGTGCTGCGATATCACATCGAAAGGAACTATGATGGTCT
GGCCCACCAGCGAGGCGCAACCGCCGCCGGCGAGGGCCTTCATTCGATGC
CCAGCACCCAGATCGTTGAGCACATGGCGCACGCCCTCGTAGGTGCTTAT
GTAAAAGACGCCGGACACTATTTGCACGGAGGAGATCCAGAAACCTCTAT
ACAGACCGGGCACTCCCTCCGATCGGTAGATCTTCATGGCGCAATCCACC
ATGCCCTTGTACACATCGCTCTTGTGCTGCACCTGCAATTGCGTCTTGAT
CACGGTCAGCGGGAATAGGC
BS07785.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5805-PA | 1020 | CG5805-RA | 167..1014 | 870..23 | 4215 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5805-RB | 2151 | CG5805-RB | 454..1301 | 870..23 | 4225 | 99.9 | Minus |
CG5805-RA | 2036 | CG5805-RA | 524..1371 | 870..23 | 4225 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24785973..24786506 | 337..870 | 2670 | 100 | Plus |
3R | 32079331 | 3R | 24785402..24785591 | 23..212 | 935 | 99.5 | Plus |
3R | 32079331 | 3R | 24785785..24785915 | 207..337 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:55:53 has no hits.
BS07785.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:46 Download gff for
BS07785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-PA | 167..1020 | 16..870 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:50 Download gff for
BS07785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-PA | 167..1020 | 16..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:06:49 Download gff for
BS07785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 524..1379 | 14..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:45 Download gff for
BS07785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 524..1379 | 14..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:45 Download gff for
BS07785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24785394..24785587 | 14..208 | 97 | <- | Plus |
3R | 24785787..24785914 | 209..336 | 100 | <- | Plus |
3R | 24785973..24786506 | 337..870 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:06:49 Download gff for
BS07785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20611116..20611309 | 14..208 | 97 | <- | Plus |
arm_3R | 20611509..20611636 | 209..336 | 100 | <- | Plus |
arm_3R | 20611695..20612228 | 337..870 | 100 | | Plus |
BS07785.5prime Sequence
911 bp (790 high quality bases) assembled on 2006-01-06
> BS07785.5prime
GAAGTTATCAGTCGACATGACGGAAAGCAGCAGTAGCACCAAATCCCGCC
TAGCGGTGGCGCCCACCGGAGTTGGAGGAGCAGCCGAGGGAGCCACATAC
ATACGCACCATCGAATGGGACATGATGAACAAGACCAAGTTCTTTCCGCT
CTCCATGCTCAGCTCGTTTTCGGTGCGCTGCTGCCTATTCCCGCTGACCG
TGATCAAGACGCAATTGCAGGTGCAGCACAAGAGCGATGTGTACAAGGGC
ATGGTGGATTGCGCCATGAAGATCTACCGATCGGAGGGAGTGCCCGGTCT
GTATAGAGGTTTCTGGATCTCCTCCGTGCAAATAGTGTCCGGCGTCTTTT
ACATAAGCACCTACGAGGGCGTGCGCCATGTGCTCAACGATCTGGGTGCT
GGGCATCGAATGAAGGCCCTCGCCGGCGGCGGTTGCGCCTCGCTGGTGGG
CCAGACCATCATAGTTCCTTTCGATGTGATATCGCAGCACGCCATGGTGC
TCGGGATGTCGGCCCATGCCGGTTCCAAGGGCGATATCAATCCGCTGGGC
ATTAAGTCATGGCCCGGTCGCAGTCGCCTGCACATTTCCATGGACATTGG
CAGGGAGATAATGCGGCGCGATGGCTTCCGGGGCTTCTACCGCGGCTACA
CCGCCAGCCTGATGGCCTACGTACCGAATTCGGCCATGTGGTGGGCCTTC
TATCATCTCTATCAGGACGAACTGTTCCGCATCTGCCCCGTTTGGGTGTC
CCATCTGTTTATCCAGTGCGTGGCCGGCAGTTTAGGTGGCTTCAACACGA
CAATACTAACCAATCCTTTAGATATAGTGCGTGCCCGTCTGCAGGTCCAC
CGCTTGGACTCGATGAGCGTCGCCTTCCGGGAGCTGTGGCAGGAGGAGAA
GCTGGACTGCT
BS07785.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5805-PA | 1020 | CG5805-RA | 1..895 | 17..911 | 4400 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5805-RB | 2151 | CG5805-RB | 288..1182 | 17..911 | 4430 | 99.7 | Plus |
CG5805-RA | 2036 | CG5805-RA | 358..1252 | 17..911 | 4430 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24785973..24786672 | 716..17 | 3500 | 100 | Minus |
3R | 32079331 | 3R | 24785785..24785915 | 846..716 | 625 | 98.5 | Minus |
3R | 32079331 | 3R | 24785521..24785591 | 911..841 | 340 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:44:32 has no hits.
BS07785.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:48 Download gff for
BS07785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-PA | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:17:51 Download gff for
BS07785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-PA | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:43:56 Download gff for
BS07785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 350..1252 | 6..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:31:39 Download gff for
BS07785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 350..1252 | 6..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:31:39 Download gff for
BS07785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24785521..24785587 | 845..911 | 98 | <- | Minus |
3R | 24785787..24785914 | 717..844 | 98 | <- | Minus |
3R | 24785973..24786680 | 6..716 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:43:56 Download gff for
BS07785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20611243..20611309 | 845..911 | 98 | <- | Minus |
arm_3R | 20611509..20611636 | 717..844 | 98 | <- | Minus |
arm_3R | 20611695..20612402 | 6..716 | 99 | | Minus |
BS07785.complete Sequence
1052 bp assembled on 2008-08-14
GenBank Submission: FJ635988
> BS07785.complete
GAAGTTATCAGTCGACATGACGGAAAGCAGCAGTAGCACCAAATCCCGCC
TAGCGGTGGCGCCCACCGGAGTTGGAGGAGCAGCCGAGGGAGCCACATAC
ATACGCACCATCGAATGGGACATGATGAACAAGACCAAGTTCTTTCCGCT
CTCCATGCTCAGCTCGTTTTCGGTGCGCTGCTGCCTATTCCCGCTGACCG
TGATCAAGACGCAATTGCAGGTGCAGCACAAGAGCGATGTGTACAAGGGC
ATGGTGGATTGCGCCATGAAGATCTACCGATCGGAGGGAGTGCCCGGTCT
GTATAGAGGTTTCTGGATCTCCTCCGTGCAAATAGTGTCCGGCGTCTTTT
ACATAAGCACCTACGAGGGCGTGCGCCATGTGCTCAACGATCTGGGTGCT
GGGCATCGAATGAAGGCCCTCGCCGGCGGCGGTTGCGCCTCGCTGGTGGG
CCAGACCATCATAGTTCCTTTCGATGTGATATCGCAGCACGCCATGGTGC
TCGGGATGTCGGCCCATGCCGGTTCCAAGGGCGATATCAATCCGCTGGGC
ATTAAGTCATGGCCCGGTCGCAGTCGCCTGCACATTTCCATGGACATTGG
CAGGGAGATAATGCGGCGCGATGGCTTCCGGGGCTTCTACCGCGGCTACA
CCGCCAGCCTGATGGCCTACGTACCGAATTCGGCCATGTGGTGGGCCTTC
TATCATCTCTATCAGGACGAACTGTTCCGCATCTGCCCCGTTTGGGTGTC
CCATCTGTTTATCCAGTGCGTGGCCGGCAGTTTAGGTGGCTTCACAACGA
CAATACTAACCAATCCTTTAGATATAGTGCGTGCCCGTCTGCAGGTCCAC
CGCTTGGACTCGATGAGCGTCGCCTTCCGGGAGCTGTGGCAGGAGGAGAA
GCTGAACTGCTTCTTCAAGGGACTGTCCGCCCGCCTGGTGCAGTCGGCAG
CCTTCTCATTCAGCATTATTCTAGGTTACGAGACGATCAAGCGCATTGCG
GTGGACGAGCAGTACAAGCATCAGATCCGCTGGTAAAAGCTTTCTAGACC
AT
BS07785.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:24:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5805-RB | 1020 | CG5805-PB | 1..1020 | 17..1036 | 5100 | 100 | Plus |
CG5805-RA | 1020 | CG5805-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5805-RB | 2151 | CG5805-RB | 288..1308 | 17..1037 | 5105 | 100 | Plus |
CG5805-RA | 2036 | CG5805-RA | 358..1378 | 17..1037 | 5105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:24:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24785973..24786672 | 716..17 | 3500 | 100 | Minus |
3R | 32079331 | 3R | 24785395..24785591 | 1037..841 | 985 | 100 | Minus |
3R | 32079331 | 3R | 24785785..24785915 | 846..716 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:24:08 has no hits.
BS07785.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:06 Download gff for
BS07785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 349..1377 | 6..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:08 Download gff for
BS07785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 358..1375 | 17..1034 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:50 Download gff for
BS07785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 357..1374 | 17..1034 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:54 Download gff for
BS07785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 358..1375 | 17..1034 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:54 Download gff for
BS07785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24785787..24785914 | 717..844 | 100 | <- | Minus |
3R | 24785398..24785587 | 845..1034 | 100 | <- | Minus |
3R | 24785973..24786672 | 17..716 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:08 Download gff for
BS07785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20611120..20611309 | 845..1034 | 100 | <- | Minus |
arm_3R | 20611509..20611636 | 717..844 | 100 | <- | Minus |
arm_3R | 20611695..20612394 | 17..716 | 100 | | Minus |
BS07785.pep Sequence
Translation from 16 to 1035
> BS07785.pep
MTESSSSTKSRLAVAPTGVGGAAEGATYIRTIEWDMMNKTKFFPLSMLSS
FSVRCCLFPLTVIKTQLQVQHKSDVYKGMVDCAMKIYRSEGVPGLYRGFW
ISSVQIVSGVFYISTYEGVRHVLNDLGAGHRMKALAGGGCASLVGQTIIV
PFDVISQHAMVLGMSAHAGSKGDINPLGIKSWPGRSRLHISMDIGREIMR
RDGFRGFYRGYTASLMAYVPNSAMWWAFYHLYQDELFRICPVWVSHLFIQ
CVAGSLGGFTTTILTNPLDIVRARLQVHRLDSMSVAFRELWQEEKLNCFF
KGLSARLVQSAAFSFSIILGYETIKRIAVDEQYKHQIRW*
BS07785.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5805-PB | 339 | CG5805-PB | 1..339 | 1..339 | 1779 | 100 | Plus |
CG5805-PA | 339 | CG5805-PA | 1..339 | 1..339 | 1779 | 100 | Plus |
aralar1-PB | 679 | CG2139-PB | 344..603 | 57..327 | 188 | 23.7 | Plus |
aralar1-PD | 682 | CG2139-PD | 347..606 | 57..327 | 188 | 23.7 | Plus |
aralar1-PA | 682 | CG2139-PA | 347..606 | 57..327 | 188 | 23.7 | Plus |
aralar1-PB | 679 | CG2139-PB | 333..518 | 138..337 | 157 | 27.2 | Plus |
aralar1-PD | 682 | CG2139-PD | 336..521 | 138..337 | 157 | 27.2 | Plus |