Clone Sequence Records
BS07792.3prime Sequence
826 bp (748 high quality bases) assembled on 2006-01-06
> BS07792.3prime
ATGGTCTAGAAAGCTTCTACTTTTTAGCTTTAGCACTACCACTGTTGCTG
TGGCTGCCGCTCATATTGCACTCTGCTTCCGGATCCGCATCCGCCTCCTT
GTTGCTACTGCCGTTGCTCTGTTCGCCATCGTTGGCCATTTCCGGTTCCT
TAAGACCCATTTTTTGGAAATCGCAGTCGATGATCCTTTTGCGCTTGCGC
AGCGGTCGACTACACTCGGCCGCCGCCTCTTTGGTTTGAATCAGTGTTCG
CTTGGTCTGCAGCCGTGTGATCTTCAGCTTGGGCAGCTTCTGGTTGTCCG
CCTCGGGTTCGGACTGCGTAGAATCCCTGACGATGCAGTGCGTCTGTTGT
GGTGAAGACGATGATTCCTGTGAAATTGATGGCGAAGCCGCGTTGGTGTC
CCCATCTGGATTTGTCTTTGGTATGGATTCCTTTTCATCCTCTTCCTGAT
CGTTGTCCAGCTCCTGGCCAGGCTCACTTAGTTTCTCCACATCTGGTTTC
TCCTCCTCCAGCTCACTTCTGCTTTTGCTGCAGTCCAGCGGCTGTGGTTG
CTCCTGTTCTTCTGCGTTTTCCGCTCTGGTTGGAGCAGCCCGCTGCTCAT
CGAAACGCTTCCTCTCCTCGGGAGTTAGGTGTGCCTTGTAAAAATCTATC
ACAGGCAGAGGAACGGGTATGGGTATGGGCAGGGGAATGATGATGGGATA
GGGCACCATCACGGTCACCGGCGGCACAGCCCCCAACAGAGACCCTAGCT
CGGGCATTTGAGGCGGAAGCGGTGGCCCGAAGTGCGGACCAAATCCACGA
GGCATCATGCCATGCGGAGGTGGATG
BS07792.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8991-PA | 2442 | CG8991-RA | 1633..2442 | 826..17 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sobp-RB | 2823 | CG8991-RB | 1824..2634 | 826..16 | 4055 | 100 | Minus |
| Sobp-RA | 3104 | CG8991-RA | 2105..2915 | 826..16 | 4055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:09:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11827359..11828169 | 16..826 | 4055 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:09:31 has no hits.
BS07792.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:55 Download gff for
BS07792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8991-PA | 1633..2442 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:01 Download gff for
BS07792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8991-PA | 1633..2442 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:40:04 Download gff for
BS07792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sobp-RA | 1824..2634 | 16..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:41 Download gff for
BS07792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sobp-RA | 2105..2915 | 16..826 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:41 Download gff for
BS07792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11827359..11828169 | 16..826 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:40:04 Download gff for
BS07792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7714864..7715674 | 16..826 | 100 | | Plus |
BS07792.5prime Sequence
918 bp (840 high quality bases) assembled on 2006-01-06
> BS07792.5prime
GAAGTTATCAGTCGACATGAGTTTCCTTGACGTTCGTTGCTTCGGAAAAT
CCATCGCAAGAAAACTGAAAAGAGCGTGCGAAAGCAGAAAGGCCAATTTT
TCACCCGAAAGTTATATACCGCATCCAGTTGAAATGTCCGCCAAGACGTC
GCCATCGTCCACTTCTCGGGATGCCAACGTGGGATCCTCGAGTGCGATTC
CCGTTCAGATCAAAAAAGAACTGCCCAGCGATGAGATAAAGGAATTCGCG
CACAACACCATGAACGAGCTGCTCGGCTGGTATGGATTCGAGGGTGTGGA
TGTGGATCGTCTCGACCTGACCGCCAAAACGTCGCGCCTGCTGCAAAGTG
CCGCCGCCGCAGCTGTGGCCAATCAGCAGAGCCACCAGCTTCACCAGTTG
GAGCCGCATCCGAATCTGGAGCGGAAGCGGACCAGTCTGCTTCGCAGTAG
CAGTCGCAGTTCCTTGGCAGCGGCCTACCACAACAACAACAACAACAATA
ATAACAACAACAACGGCAGCAGCAGCAAGAACAACGGAGGAGTCGGCGGC
GTAGGCGTTGGGAGTGGTCGGAAGAGCGGGTTGATGAACTGCAGCAGCAC
CACCACCACGCCATCGGACCACGACACGCGAAGCTCACGGGAGGAGGATT
CCAAGAGTCCGCACTCCATCGGGAAGCCAGCGGGAGCTGCGCACACGGAT
GAGAAAATAGACTTCAGCAATTGCTGCTGGTGCCATCGACCGATTGCGGA
GAATGCGCCGGACTACCTGACCAGCTGCGACGGACCGCGCTACTGCTCCG
AATCCTGCTTCGCCCAGAGCCGGAGGGCATCCTTCAAGAAGGCCAAGACC
TGCGACTGGTGCAAGCATGTGCGCCACGCGGTTAGCTACGTGGACTTTCA
GGACGGCGCCTCCCAGCT
BS07792.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8991-PA | 2442 | CG8991-RA | 1..902 | 17..918 | 4510 | 100 | Plus |
| CG32133-PA | 6885 | CG32133-RA | 711..758 | 480..527 | 165 | 93.7 | Plus |
| CG32133-PA | 6885 | CG32133-RA | 714..761 | 480..527 | 140 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sobp-RB | 2823 | CG8991-RB | 191..1093 | 16..918 | 4515 | 100 | Plus |
| Sobp-RA | 3104 | CG8991-RA | 472..1374 | 16..918 | 4515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11829968..11830438 | 710..240 | 2355 | 100 | Minus |
| 2R | 25286936 | 2R | 11828900..11829109 | 918..709 | 1050 | 100 | Minus |
| 2R | 25286936 | 2R | 11837895..11838038 | 242..99 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 11839272..11839354 | 98..16 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:11:58 has no hits.
BS07792.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:23:56 Download gff for
BS07792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8991-PA | 1..902 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:02 Download gff for
BS07792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8991-PA | 1..902 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:30:29 Download gff for
BS07792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sobp-RA | 188..1093 | 11..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:47:35 Download gff for
BS07792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sobp-RA | 469..1374 | 11..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:47:35 Download gff for
BS07792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11828900..11829107 | 711..918 | 100 | <- | Minus |
| 2R | 11829968..11830436 | 242..710 | 100 | <- | Minus |
| 2R | 11837896..11838038 | 99..241 | 100 | <- | Minus |
| 2R | 11839272..11839357 | 11..98 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:30:29 Download gff for
BS07792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7716405..7716612 | 711..918 | 100 | <- | Minus |
| arm_2R | 7717473..7717941 | 242..710 | 100 | <- | Minus |
| arm_2R | 7725401..7725543 | 99..241 | 100 | <- | Minus |
| arm_2R | 7726777..7726862 | 11..98 | 97 | | Minus |
BS07792.complete Sequence
2474 bp assembled on 2010-05-10
GenBank Submission: KX804984
> BS07792.complete
GAAGTTATCAGTCGACATGAGTTTCCTTGACGTTCGTTGCTTCGGAAAAT
CCATCGCAAGAAAACTGAAAAGAGCGTGCGAAAGCAGAAAGGCCAATTTT
TCACCCGAAAGTTATATACCGCATCCAGTTGAAATGTCCGCCAAGACGTC
GCCATCGTCCACTTCTCGGGATGCCAACGTGGGATCCTCGAGTGCGATTC
CCGTTCAGATCAAAAAAGAACTGCCCAGCGATGAGATAAAGGAATTCGCG
CACAACACCATGAACGAGCTGCTCGGCTGGTATGGATTCGAGGGTGTGGA
TGTGGATCGTCTCGACCTGACCGCCAAAACGTCGCGCCTGCTGCAAAGTG
CCGCCGCCGCAGCTGTGGCCAATCAGCAGAGCCACCAGCTTCACCAGTTG
GAGCCGCATCCGAATCTGGAGCGGAAGCGGACCAGTCTGCTTCGCAGTAG
CAGTCGCAGTTCCTTGGCAGCGGCCTACCACAACAACAACAACAACAATA
ATAACAACAACAACGGCAGCAGCAGCAAGAACAACGGAGGAGTCGGCGGC
GTAGGCGTTGGGAGTGGTCGGAAGAGCGGGTTGATGAACTGCAGCAGCAC
CACCACCACGCCATCGGACCACGACACGCGAAGCTCACGGGAGGAGGATT
CCAAGAGTCCGCACTCCATCGGGAAGCCAGCGGGAGCTGCGCACACGGAT
GAGAAAATAGACTTCAGCAATTGCTGCTGGTGCCATCGACCGATTGCGGA
GAATGCGCCGGACTACCTGACCAGCTGCGACGGACCGCGCTACTGCTCCG
AATCCTGCTTCGCCCAGAGCCGGAGGGCATCCTTCAAGAAGGCCAAGACC
TGCGACTGGTGCAAGCATGTGCGCCACGCGGTTAGCTACGTGGACTTTCA
GGACGGCGCCTCCCAGCTACAGTTCTGCTCGGAGAAGTGCCTCAACCAGT
ACAAGATGCAGATCTTCTGCCACGAAACCCAGGCGCACCTGGACATGCAT
CCGCACCTGCGGGATCAGGCCATGGATGCGGGCAGCGAGGCTGGGCTGAT
AACGCCGGATCTGTGGCTTCGAAACTGCAGGAGTCGCTCGGCCTCGCCCG
CCTCCACGCTCTCGGTGTCTCCGGGTCCGCCGCCTGCTCCGGCTGTCAGT
CGCTGTCCGGACTCACCGCCTAGTCATCATCCCAGCAAACCTTTGATCTC
AGTGGCACCCGTCTCGAAGTTGCTGGCCCAGAAGAGTCCGGGTCCCGGAC
CCGGAGCCCCTCCACCACCGCCACCGCCTGTCCAGCGGCATTTGGCGGGA
AAGTTGGGTCGCCGCAAGCGCCGAGGTATTTCCTCTTCCTTGGGCTCGGA
AACTGTGGCCAGTCTGCTGCAGAAACAGCAGCAGCAACAGGCACCGCAGC
AACATCAGGCACCTCCCACGCTAACGGCTGACTTTGGTGGATCCAGCGTA
CCACTGCCTCCGCTCTCGCCCATGCCCAGCATGCAGGAGGCACCACAACA
GCAGCAGGCTCCTCAGGTGCCACCAACACAAGCCCTGCCACGGGGACCAA
CAGCCATCCCGGCCAGCTACTTCGCGACGCCTTCGAATGGTGTGCCCATG
GGACATCCGTTTGCGGGGCGCCCACCGCCGCCTCCGCATCACTTTATGCA
TCCACCTCCGCATGGCATGATGCCTCGTGGATTTGGTCCGCACTTCGGGC
CACCGCTTCCGCCTCAAATGCCCGAGCTAGGGTCTCTGTTGGGGGCTGTG
CCGCCGGTGACCGTGATGGTGCCCTATCCCATCATCATTCCCCTGCCCAT
ACCCATACCCGTTCCTCTGCCTGTGATAGATTTTTACAAGGCACACCTAA
CTCCCGAGGAGAGGAAGCGTTTCGATGAGCAGCGGGCTGCTCCAACCAGA
GCGGAAAACGCAGAAGAACAGGAGCAACCACAGCCGCTGGACTGCAGCAA
AAGCAGAAGTGAGCTGGAGGAGGAGAAACCAGATGTGGAGAAACTAAGTG
AGCCTGGCCAGGAGCTGGACAACGATCAGGAAGAGGATGAAAAGGAATCC
ATACCAAAGACAAATCCAGATGGGGACACCAACGCGGCTTCGCCATCAAT
TTCACAGGAATCATCGTCTTCACCACAACAGACGCACTGCATCGTCAGGG
ATTCTACGCAGTCCGAACCCGAGGCGGACAACCAGAAGCTGCCCAAGCTG
AAGATCACACGGCTGCAGACCAAGCGAACACTGATTCAAACCAAAGAGGC
GGCGGCCGAGTGTAGTCGACCGCTGCGCAAGCGCAAAAGGATCATCGACT
GCGATTTCCAAAAAATGGGTCTTAAGGAACCGGAAATGGCCAACGATGGC
GAACAGAGCAACGGCAGTAGCAACAAGGAGGCGGATGCGGATCCGGAAGC
AGAGTGCAATATGAGCGGCAGCCACAGCAACAGTGGTAGTGCTAAAGCTA
AAAAGTAGAAGCTTTCTAGACCAT
BS07792.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sobp-RB | 2442 | CG8991-PB | 1..2442 | 17..2458 | 12210 | 100 | Plus |
| Sobp-RA | 2442 | CG8991-PA | 1..2442 | 17..2458 | 12210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:43:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sobp-RB | 2823 | CG8991-RB | 191..2634 | 16..2459 | 12220 | 100 | Plus |
| Sobp-RA | 3104 | CG8991-RA | 472..2915 | 16..2459 | 12220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:43:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11827359..11829109 | 2459..709 | 8755 | 100 | Minus |
| 2R | 25286936 | 2R | 11829968..11830438 | 710..240 | 2355 | 100 | Minus |
| 2R | 25286936 | 2R | 11837895..11838038 | 242..99 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 11839272..11839354 | 98..16 | 415 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2842 | 1347..1577 | 160 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6917 | 1364..1570 | 137 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2537 | 1367..1556 | 133 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6840 | 1364..1407 | 130 | 77.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6786 | 1367..1407 | 124 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6807 | 1367..1407 | 124 | 78 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1160 | 1367..1415 | 121 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2293..2354 | 1347..1408 | 120 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2382 | 1364..1412 | 119 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6961 | 1367..1539 | 119 | 56.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3282..3322 | 1364..1404 | 115 | 75.6 | Plus |
BS07792.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:06 Download gff for
BS07792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sobp-RA | 178..2619 | 17..2458 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:59 Download gff for
BS07792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sobp-RA | 192..2633 | 17..2458 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:50 Download gff for
BS07792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sobp-RA | 473..2914 | 17..2458 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:50 Download gff for
BS07792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11827360..11829107 | 711..2458 | 100 | <- | Minus |
| 2R | 11829968..11830436 | 242..710 | 100 | <- | Minus |
| 2R | 11837896..11838038 | 99..241 | 100 | <- | Minus |
| 2R | 11839272..11839353 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:59 Download gff for
BS07792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7714865..7716612 | 711..2458 | 100 | <- | Minus |
| arm_2R | 7717473..7717941 | 242..710 | 100 | <- | Minus |
| arm_2R | 7725401..7725543 | 99..241 | 100 | <- | Minus |
| arm_2R | 7726777..7726858 | 17..98 | 100 | | Minus |
BS07792.pep Sequence
Translation from 16 to 2457
> BS07792.pep
MSFLDVRCFGKSIARKLKRACESRKANFSPESYIPHPVEMSAKTSPSSTS
RDANVGSSSAIPVQIKKELPSDEIKEFAHNTMNELLGWYGFEGVDVDRLD
LTAKTSRLLQSAAAAAVANQQSHQLHQLEPHPNLERKRTSLLRSSSRSSL
AAAYHNNNNNNNNNNNGSSSKNNGGVGGVGVGSGRKSGLMNCSSTTTTPS
DHDTRSSREEDSKSPHSIGKPAGAAHTDEKIDFSNCCWCHRPIAENAPDY
LTSCDGPRYCSESCFAQSRRASFKKAKTCDWCKHVRHAVSYVDFQDGASQ
LQFCSEKCLNQYKMQIFCHETQAHLDMHPHLRDQAMDAGSEAGLITPDLW
LRNCRSRSASPASTLSVSPGPPPAPAVSRCPDSPPSHHPSKPLISVAPVS
KLLAQKSPGPGPGAPPPPPPPVQRHLAGKLGRRKRRGISSSLGSETVASL
LQKQQQQQAPQQHQAPPTLTADFGGSSVPLPPLSPMPSMQEAPQQQQAPQ
VPPTQALPRGPTAIPASYFATPSNGVPMGHPFAGRPPPPPHHFMHPPPHG
MMPRGFGPHFGPPLPPQMPELGSLLGAVPPVTVMVPYPIIIPLPIPIPVP
LPVIDFYKAHLTPEERKRFDEQRAAPTRAENAEEQEQPQPLDCSKSRSEL
EEEKPDVEKLSEPGQELDNDQEEDEKESIPKTNPDGDTNAASPSISQESS
SSPQQTHCIVRDSTQSEPEADNQKLPKLKITRLQTKRTLIQTKEAAAECS
RPLRKRKRIIDCDFQKMGLKEPEMANDGEQSNGSSNKEADADPEAECNMS
GSHSNSGSAKAKK*
BS07792.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sobp-PB | 813 | CG8991-PB | 1..813 | 1..813 | 4340 | 100 | Plus |
| Sobp-PA | 813 | CG8991-PA | 1..813 | 1..813 | 4340 | 100 | Plus |
| CG15021-PA | 420 | CG15021-PA | 55..320 | 367..703 | 177 | 26.1 | Plus |
| ena-PE | 684 | CG15112-PE | 279..462 | 390..580 | 166 | 34.5 | Plus |
| ena-PC | 684 | CG15112-PC | 279..462 | 390..580 | 166 | 34.5 | Plus |
