Clone Sequence Records
BS07802.3prime Sequence
894 bp (820 high quality bases) assembled on 2006-01-06
> BS07802.3prime
ATGGTCTAGAAAGCTTTCAATCCTGCTTATTGTCGCTGATGGCTGTGGAT
GCAGTGGCCACACTTTCACCCGTCTGGGATTTAATAATGGTTGGCTTACG
GCCTTTTTCGAGGAGCGGAGAACTGTCCGGAGATCCTTTGACACTCTTTT
CGCACACCAAAGTGGAGGCCTTGGACTTCAGTTCCTCAGCACTGGAGAAT
TGAGAGCGACTCTTATACTGGCCATTCGTTTTGGTTTTGGTCCTCAGATC
GTATCTACGATTTCGACAGGAAGCCAATAGAATCTGAACCGGAGTCCAGC
AGAGTAGAGTTATGCCTACGATCAAGCAAATTCCGGCGAATATATGTCCG
GAGAGCATGACAATGGGCAGCACCTTCAGTTGATCTGCCATATCTGGAGT
GATTCTTACTTTCTGTTCGAACCATACGAGTGGGAAAAATATCCTTGGTA
TTCCAGTGTATAAGCTAATGCCTTGGATTGGCTCCACGAGCATATTCACT
TGAAATCGGGCAGCCACCTCCAGGGGAATACCAGTACTTGGCTGCACAAC
CATATAAAACTCGTGATCCTTCTGGTTAGGACTCAAGCCCTCTACCTGAT
CTGGGTAGTAAGGATCGGCGTTGAAAAAGTGTGGATAGGACATAAAAACA
GGAGATCCAAAGCGACAGGAACTGATGTTCATCACACCCGACGGAACACA
TTGGCCACCACAAAAACAAAGGTTCTCAGGATACTGGGTGCCATTATCTA
CAGATCGTGGTCCGCCTGAGAATTTATAACCTTCCAGTCCTTCAATATCC
ACAGTTTCCACATAATCCAGCGAAATAGTTCGGCACATATCGGGCGTAAA
TAGACCAACACTATCGCCGGGCTTCAGATGCTGTGGCTGGAACT
BS07802.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12789-PA | 1692 | CG12789-RA | 815..1692 | 894..17 | 4365 | 99.8 | Minus |
| CG12789-PB | 1590 | CG12789-RB | 713..1590 | 894..17 | 4365 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| santa-maria-RC | 5563 | CG12789-RC | 4412..5290 | 894..16 | 4380 | 99.9 | Minus |
| santa-maria-RA | 2302 | CG12789-RA | 1151..2029 | 894..16 | 4380 | 99.9 | Minus |
| CG5973-RE | 2204 | CG5973-RE | 1950..2204 | 16..270 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7445628..7446354 | 16..742 | 3635 | 100 | Plus |
| 2L | 23513712 | 2L | 7446415..7446568 | 741..894 | 755 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:32:39 has no hits.
BS07802.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:06 Download gff for
BS07802.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12789-PA | 815..1692 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:16 Download gff for
BS07802.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12789-PB | 713..1590 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:43:26 Download gff for
BS07802.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| santa-maria-RA | 1074..1952 | 16..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:19 Download gff for
BS07802.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| santa-maria-RA | 1151..2029 | 16..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:19 Download gff for
BS07802.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7445628..7446353 | 16..741 | 100 | <- | Plus |
| 2L | 7446416..7446568 | 742..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:43:26 Download gff for
BS07802.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7445628..7446353 | 16..741 | 100 | <- | Plus |
| arm_2L | 7446416..7446568 | 742..894 | 99 | | Plus |
BS07802.5prime Sequence
945 bp (839 high quality bases) assembled on 2006-01-06
> BS07802.5prime
GAAGTTATCAGTCGACATGTTCTGGGTGGACCTGTTCGATTGGATCATGC
ACAAGGAAATGGCTCTGGCCCCCGACACACGTGTCTATGAAAATTGGAAG
AGTCCGCCAATTGATCTCAGTCTGGACATCTACCTGTACAACTGGACGAA
TCCGGAGGATTTCGGCAACCTTTCCACAAAGCCCATTCTGGAGCAGGTGG
GTCCTTATCGTTTTATCGAGCGACCCGATAAGGTGGACATTCACTGGCAT
CCAGAAAATGCATCCGTCACTTATCGCAGGCGCAGCTTGTTCTACTTTGA
TGCGGCGGGCAGTAATGGCAGCCTGGACGATGAGATTACCACGCTTAATG
CAGTGGCTCTGTCTGCAGCCGCCACAGCCAAATATTGGCCACCAGTTAAG
CGCTCCCTTGTCGATGTGGGACTAAAGATGTACGGTGCCGAGATGTCTGT
CCAAAAATCGATCGATGAGCTGCTCTTCACCGGTTACAATGACGCAATGA
TCGACGTGGCCATGGCCATGCCCATTTTTGGTGATGAGGTGAAGGTTCCA
TTCGATAAGTTCGGTTGGTTCTATACGCGCAATGGAAGTGCCGATCTTAC
CGGAGTTTTTAATGTCTTCACTGGCGCCGATCAACTGGCCAAACTGGGTC
AGATGCACTCGTGGAATTACCAGGAGAACACTGGATTCTTTGATTCCTAT
TGCGGTATGACCAATGGATCCGCCGGGGAGTTCCAGCCACAGCATCTGAA
GCCCGGCGATAGTGTTGGTCTATTTACGCCCGATATGTGCCGAACTATTC
CGCTGGATTATGTGGAAACTGTGGATATTGAAGGACTGGAAAGGTATAAA
TTCTCANGCGGACCACGATCTGTAGATAATGGCACCCAGTATCCTGAGAA
CCTTTTGTTTTGTGGTGGCCAATGTGTTCCGTCGGGTGTGATGAA
BS07802.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12789-PA | 1692 | CG12789-RA | 102..1031 | 16..945 | 4531 | 99.4 | Plus |
| CG12789-PB | 1590 | CG12789-RB | 1..929 | 17..945 | 4526 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| santa-maria-RC | 5563 | CG12789-RC | 3699..4628 | 16..945 | 4579 | 99.5 | Plus |
| santa-maria-RA | 2302 | CG12789-RA | 438..1367 | 16..945 | 4579 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7446415..7446936 | 882..361 | 2569 | 99.4 | Minus |
| 2L | 23513712 | 2L | 7446996..7447303 | 361..54 | 1540 | 100 | Minus |
| 2L | 23513712 | 2L | 7446290..7446354 | 945..881 | 295 | 96.9 | Minus |
| 2L | 23513712 | 2L | 7447502..7447546 | 60..16 | 210 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:00:15 has no hits.
BS07802.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:07 Download gff for
BS07802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12789-PA | 92..1029 | 6..943 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:17 Download gff for
BS07802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12789-PA | 92..1029 | 6..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:20:09 Download gff for
BS07802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| santa-maria-RA | 351..1290 | 6..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:31:49 Download gff for
BS07802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| santa-maria-RA | 428..1367 | 6..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:31:49 Download gff for
BS07802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7446290..7446353 | 882..945 | 96 | <- | Minus |
| 2L | 7446416..7446935 | 362..881 | 99 | <- | Minus |
| 2L | 7446996..7447301 | 56..361 | 100 | <- | Minus |
| 2L | 7447507..7447556 | 6..55 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:20:09 Download gff for
BS07802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7446290..7446353 | 882..945 | 96 | <- | Minus |
| arm_2L | 7446416..7446935 | 362..881 | 99 | <- | Minus |
| arm_2L | 7446996..7447301 | 56..361 | 100 | <- | Minus |
| arm_2L | 7447507..7447556 | 6..55 | 92 | | Minus |
BS07802.complete Sequence
1622 bp (1622 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ635990
> BS07802.complete
GAAGTTATCAGTCGACATGTTCTGGGTGGACCTGTTCGATTGGATCATGC
ACAAGGAAATGGCTCTGGCCCCCGACACACGTGTCTATGAAAATTGGAAG
AGTCCGCCAATTGATCTCAGTCTGGACATCTACCTGTACAACTGGACGAA
TCCGGAGGATTTCGGCAACCTTTCCACAAAGCCCATTCTGGAGCAGGTGG
GTCCTTATCGTTTTATCGAGCGACCCGATAAGGTGGACATTCACTGGCAT
CCAGAAAATGCATCCGTCACTTATCGCAGGCGCAGCTTGTTCTACTTTGA
TGCGGCGGGCAGTAATGGCAGCCTGGACGATGAGATTACCACGCTTAATG
CAGTGGCTCTGTCTGCAGCCGCCACAGCCAAATATTGGCCACCAGTTAAG
CGCTCCCTTGTCGATGTGGGACTAAAGATGTACGGTGCCGAGATGTCTGT
CCAAAAATCGATCGATGAGCTGCTCTTCACCGGTTACAATGACGCAATGA
TCGACGTGGCCATGGCCATGCCCATTTTTGGTGATGAGGTGAAGGTTCCA
TTCGATAAGTTCGGTTGGTTCTATACGCGCAATGGAAGTGCCGATCTTAC
CGGAGTTTTTAATGTCTTCACTGGCGCCGATCAACTGGCCAAACTGGGTC
AGATGCACTCGTGGAATTACCAGGAGAACACTGGATTCTTTGATTCCTAT
TGCGGTATGACCAATGGATCCGCCGGGGAGTTCCAGCCACAGCATCTGAA
GCCCGGCGATAGTGTTGGTCTATTTACGCCCGATATGTGCCGAACTATTC
CGCTGGATTATGTGGAAACTGTGGATATTGAAGGACTGGAAGGTTATAAA
TTCTCAGGCGGACCACGATCTGTAGATAATGGCACCCAGTATCCTGAGAA
CCTTTGTTTTTGTGGTGGCCAATGTGTTCCGTCGGGTGTGATGAACATCA
GTTCCTGTCGCTTTGGATCTCCTGTTTTTATGTCCTATCCACACTTTTTC
AACGCCGATCCTTACTACCCAGATCAGGTAGAGGGCTTGAGTCCTAACCA
GAAGGATCACGAGTTTTATATGGTTGTGCAGCCAAGTACTGGTATTCCCC
TGGAGGTGGCTGCCCGATTTCAAGTGAATATGCTCGTGGAGCCAATCCAA
GGCATTAGCTTATACACTGGAATACCAAGGATATTTTTCCCACTCGTATG
GTTCGAACAGAAAGTAAGAATCACTCCAGATATGGCAGATCAACTGAAGG
TGCTGCCCATTGTCATGCTCTCCGGACATATATTCGCCGGAATTTGCTTG
ATCGTAGGCATAACTCTACTCTGCTGGACTCCGGTTCAGATTCTATTGGC
TTCCTGTCGAAATCGTAGATACGATCTGAGGACCAAAACCAAAACGAATG
GCCAGTATAAGAGTCGCTCTCAATTCTCCAGTGCTGAGGAACTGAAGTCC
AAGGCCTCCACTTTGGTGTGCGAAAAGAGTGTCAAAGGATCTCCGGACAG
TTCTCCGCTCCTCGAAAAAGGCCGTAAGCCAACCATTATTAAATCCCAGA
CGGGTGAAAGTGTGGCCACTGCATCCACAGCCATCAGCGACAATAAGCAG
GATTGAAAGCTTTCTAGACCAT
BS07802.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:45:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| santa-maria-RC | 1692 | CG12789-PC | 102..1692 | 16..1606 | 7955 | 100 | Plus |
| santa-maria-RA | 1692 | CG12789-PA | 102..1692 | 16..1606 | 7955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| santa-maria-RC | 5563 | CG12789-RC | 3699..5290 | 16..1607 | 7960 | 100 | Plus |
| santa-maria-RA | 2302 | CG12789-RA | 438..2029 | 16..1607 | 7960 | 100 | Plus |
| CG5973-RE | 2204 | CG5973-RE | 1950..2204 | 1607..1353 | 1275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7445628..7446354 | 1607..881 | 3635 | 100 | Minus |
| 2L | 23513712 | 2L | 7446415..7446936 | 882..361 | 2610 | 100 | Minus |
| 2L | 23513712 | 2L | 7446996..7447303 | 361..54 | 1540 | 100 | Minus |
| 2L | 23513712 | 2L | 7447502..7447546 | 60..16 | 210 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:45:03 has no hits.
BS07802.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:02 Download gff for
BS07802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| santa-maria-RA | 92..1692 | 6..1606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:44 Download gff for
BS07802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| santa-maria-RB | 12..1613 | 6..1607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:50 Download gff for
BS07802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| santa-maria-RA | 367..1950 | 22..1605 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:02 Download gff for
BS07802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| santa-maria-RB | 12..1613 | 6..1607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:34 Download gff for
BS07802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| santa-maria-RA | 444..2027 | 22..1605 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:34 Download gff for
BS07802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7445630..7446353 | 882..1605 | 100 | <- | Minus |
| 2L | 7446416..7446935 | 362..881 | 100 | <- | Minus |
| 2L | 7446996..7447301 | 56..361 | 100 | <- | Minus |
| 2L | 7447507..7447540 | 22..55 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:50 Download gff for
BS07802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7446996..7447301 | 56..361 | 100 | <- | Minus |
| arm_2L | 7447507..7447540 | 22..55 | 100 | | Minus |
| arm_2L | 7445630..7446353 | 882..1605 | 100 | <- | Minus |
| arm_2L | 7446416..7446935 | 362..881 | 100 | <- | Minus |
BS07802.pep Sequence
Translation from 16 to 1605
> BS07802.pep
MFWVDLFDWIMHKEMALAPDTRVYENWKSPPIDLSLDIYLYNWTNPEDFG
NLSTKPILEQVGPYRFIERPDKVDIHWHPENASVTYRRRSLFYFDAAGSN
GSLDDEITTLNAVALSAAATAKYWPPVKRSLVDVGLKMYGAEMSVQKSID
ELLFTGYNDAMIDVAMAMPIFGDEVKVPFDKFGWFYTRNGSADLTGVFNV
FTGADQLAKLGQMHSWNYQENTGFFDSYCGMTNGSAGEFQPQHLKPGDSV
GLFTPDMCRTIPLDYVETVDIEGLEGYKFSGGPRSVDNGTQYPENLCFCG
GQCVPSGVMNISSCRFGSPVFMSYPHFFNADPYYPDQVEGLSPNQKDHEF
YMVVQPSTGIPLEVAARFQVNMLVEPIQGISLYTGIPRIFFPLVWFEQKV
RITPDMADQLKVLPIVMLSGHIFAGICLIVGITLLCWTPVQILLASCRNR
RYDLRTKTKTNGQYKSRSQFSSAEELKSKASTLVCEKSVKGSPDSSPLLE
KGRKPTIIKSQTGESVATASTAISDNKQD*
BS07802.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| santa-maria-PC | 563 | CG12789-PC | 35..563 | 1..529 | 2830 | 100 | Plus |
| santa-maria-PA | 563 | CG12789-PA | 35..563 | 1..529 | 2830 | 100 | Plus |
| pes-PF | 555 | CG7228-PF | 31..474 | 3..449 | 1164 | 46.7 | Plus |
| pes-PH | 555 | CG7228-PH | 31..474 | 3..449 | 1164 | 46.7 | Plus |
| pes-PG | 555 | CG7228-PG | 31..474 | 3..449 | 1164 | 46.7 | Plus |
