Clone Sequence Records
BS07804.3prime Sequence
948 bp (910 high quality bases) assembled on 2006-01-06
> BS07804.3prime
ATGGTCTAGAAAGCTTTCAGGTCTGCTCGGCCACACTGCGTCCGCCGCTC
AGTTTTAAATCGAAGGCTTGCGGATTGGCTAAGGGATCCAAGTCGGCGAA
AAGATCCAGCCAGGGATTGTTGGTGGTCTGCGATTTGCTGGGAACCGGGG
TGGCGCCACCTGCACTTGCCTTCGAGTCCGTGGCTACTTGGCTCGGTATG
GGTTGCTGATTCTGCTGGCTAAACAAGCGGGACCATAGCTTGTTAGTGCT
ATTTTGGGCAGGTATATCTTCATCCAGCGGCGCATCTATTAGAGGACTGT
CCTCCAGCTGCTTGGAAAGCTCAATAAGCAAGGATTCATTGTCGCCGCAG
GCATTGGGAGGTGCACTTGGTTTGTCCTCTTCGGACTCCTTGATTTCCGG
CTGGGTTTCCAGCTTGTCCTGGTACTCGTTAGCAAAGAATAACGACTGGT
CCTTATCCACGGCTTCGATTGGCGGCACTTCCTCTGTGGATCCTTCATTT
TGAGACAGTTCCTTTAGCACACAGAAGTCGTACTTGGGCTTTATAATCAA
GGCCTTAGATATGGTCTGGAATGTGGAGGCGGCCTTCTGGGCAAAGTTCT
TCAACTCGGTAACGTAGGCCACCAGAGCATGGGAGTACATGTTGCATCGG
GCAGCTGCTAGTAAATCAATCTTCTGAATGGAATCCATTGAGTAACCATC
GAAATTATGCTTGGCCACCCGCACGTGGGCCTGTGCCGTGCGAAACTTGT
CCAGACCCTTGCCCGTATCGGGATCCAGTTCCTGGCTGGCGGACTTCATC
CAGGAGAGAGCGGCGCGGTATTCCGTGCGCTCCTTCTCCATCGTCTGGAG
GGTCTGCTCCGTGTCCTTTATCGCCCGGCAGCGGAACACATCGACTTCGT
GCTGGAGCCGCANGAGCGGCACCCGCACGCACATCCTCTGTTGTCCAG
BS07804.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10566-PA | 1236 | CG10566-RA | 305..1236 | 948..17 | 4641 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 00:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10566-RB | 1462 | CG10566-RB | 383..1314 | 948..17 | 4649 | 99.9 | Minus |
CG10566-RA | 1735 | CG10566-RA | 656..1587 | 948..17 | 4649 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 00:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21132749..21133162 | 430..17 | 2070 | 100 | Minus |
3L | 28110227 | 3L | 21132101..21132378 | 948..671 | 1379 | 99.6 | Minus |
3L | 28110227 | 3L | 21132446..21132687 | 672..431 | 1210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 00:57:54 has no hits.
BS07804.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:10 Download gff for
BS07804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-PA | 305..1236 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:23 Download gff for
BS07804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-PA | 305..1236 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:50:06 Download gff for
BS07804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 656..1589 | 13..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:05:22 Download gff for
BS07804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 656..1589 | 13..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:05:22 Download gff for
BS07804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21132101..21132378 | 671..948 | 99 | -> | Minus |
3L | 21132448..21132687 | 431..670 | 100 | -> | Minus |
3L | 21132749..21133164 | 13..430 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:50:06 Download gff for
BS07804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21125201..21125478 | 671..948 | 99 | -> | Minus |
arm_3L | 21125548..21125787 | 431..670 | 100 | -> | Minus |
arm_3L | 21125849..21126264 | 13..430 | 99 | | Minus |
BS07804.5prime Sequence
886 bp (811 high quality bases) assembled on 2006-01-06
> BS07804.5prime
GAAGTTATCAGTCGACATGCTCAAGTCGGAGGTTCAGCACCAGTTCTGGA
TTACCAAAAAGGTGGTGCAGCGCAAGCTCGGAACGAAGGAGGACAAGCAC
ATAATATCCTCGGACGCGGAGCTGGATTCCAAGATCGAGGTGTTCAAATC
GATATCGGACACCAGCTTGAACCTGTGCAAAATCATTGACCAATACCAGG
AGCGCCTATGCATCCTGTCGCAGGAGGAGTGTGTGTTCGGCAGGTTCCTC
AAGGAGGCGGGAAAGCGGAGCAGAACCACGGGCGGTAGTATCGCCCACAC
GGCCAAGGCCGTATCCTTCGCTGGACAACAGAGGATGTGCGTGCGGGTGC
CGCTCCTGCGGCTCCAGCACGAAGTCGATGTGTTCCGCTGCCGGGCGATA
AAGGACACGGAGCAGACCCTCCAGACGATGGAGAAGGAGCGCACGGAATA
CCGCGCCGCTCTCTCCTGGATGAAGTCCGCCAGCCAGGAACTGGATCCCG
ATACGGGCAAGGGTCTGGACAAGTTTCGCACGGCACAGGCCCACGTGCGG
GTGGCCAAGCATAATTTCGATGGTTACTCAATGGATTCCATTCAGAAGAT
TGATTTACTAGCAGCTGCCCGATGCAACATGTACTCCCATGCTCTGGTGG
CCTACGTTACCGAGTTGAAGAACTTTGCCCAGAAGGCCGCCTCCACATTC
CAGACCATATCTAAGGCCTTGATTATAAAGCCCAAGTACGACTTCTGTGT
GCTAAAGGAACTGTCTCAAAATGAAGGATCCACAGAGGAAGTGCCGCCAA
TCGAAGCCGTGGATAAAGACCAGTCGTTATTCTTTGCTNACGAGTACCAG
GACAAGCTGGAAACCCAGCCGGAAATCAAGGAGTCC
BS07804.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10566-PA | 1236 | CG10566-RA | 1..870 | 17..886 | 4306 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10566-RB | 1462 | CG10566-RB | 79..948 | 17..886 | 4324 | 99.8 | Plus |
CG10566-RA | 1735 | CG10566-RA | 352..1221 | 17..886 | 4324 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21131797..21132378 | 17..598 | 2910 | 100 | Plus |
3L | 28110227 | 3L | 21132446..21132687 | 597..838 | 1195 | 99.6 | Plus |
3L | 28110227 | 3L | 21132750..21132796 | 840..886 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:01:00 has no hits.
BS07804.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:12 Download gff for
BS07804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:24 Download gff for
BS07804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:23:41 Download gff for
BS07804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 352..1221 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:16 Download gff for
BS07804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 352..1221 | 17..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:16 Download gff for
BS07804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21132749..21132796 | 839..886 | 97 | | Plus |
3L | 21131797..21132378 | 17..598 | 100 | -> | Plus |
3L | 21132448..21132687 | 599..838 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:23:41 Download gff for
BS07804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21124897..21125478 | 17..598 | 100 | -> | Plus |
arm_3L | 21125548..21125787 | 599..838 | 99 | -> | Plus |
arm_3L | 21125849..21125896 | 839..886 | 97 | | Plus |
BS07804.complete Sequence
1268 bp (1268 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ635992
> BS07804.complete
GAAGTTATCAGTCGACATGCTCAAGTCGGAGGTTCAGCACCAGTTCTGGA
TTACCAAAAAGGTGGTGCAGCGCAAGCTCGGAACGAAGGAGGACAAGCAC
ATAATATCCTCGGACGCGGAGCTGGATTCCAAGATCGAGGTGTTCAAATC
GATATCGGACACCAGCTTGAACCTGTGCAAAATCATTGACCAATACCAGG
AGCGCCTATGCATCCTGTCGCAGGAGGAGTGTGTGTTCGGCAGGTTCCTC
AAGGAGGCGGGAAAGCGGAGCAGAACCACGGGCGGTAGTATCGCCCACAC
GGCCAAGGCCGTATCCTTCGCTGGACAACAGAGGATGTGCGTGCGGGTGC
CGCTCCTGCGGCTCCAGCACGAAGTCGATGTGTTCCGCTGCCGGGCGATA
AAGGACACGGAGCAGACCCTCCAGACGATGGAGAAGGAGCGCACGGAATA
CCGCGCCGCTCTCTCCTGGATGAAGTCCGCCAGCCAGGAACTGGATCCCG
ATACGGGCAAGGGTCTGGACAAGTTTCGCACGGCACAGGCCCACGTGCGG
GTGGCCAAGCATAATTTCGATGGTTACTCAATGGATTCCATTCAGAAGAT
TGATTTACTAGCAGCTGCCCGATGCAACATGTACTCCCATGCTCTGGTGG
CCTACGTTACCGAGTTGAAGAACTTTGCCCAGAAGGCCGCCTCCACATTC
CAGACCATATCTAAGGCCTTGATTATAAAGCCCAAGTACGACTTCTGTGT
GCTAAAGGAACTGTCTCAAAATGAAGGATCCACAGAGGAAGTGCCGCCAA
TCGAAGCCGTGGATAAGGACCAGTCGTTATTCTTTGCTAACGAGTACCAG
GACAAGCTGGAAACCCAGCCGGAAATCAAGGAGTCCGAAGAGGACAAACC
AAGTGCACCTCCCAATGCCTGCGGCGACAATGAATCCTTGCTTATTGAGC
TTTCCAAGCAGCTGGAGGACAGTCCTCTAATAGATGCGCCGCTGGATGAA
GATATACCTGCCCAAAATAGCACTAACAAGCTATGGTCCCGCTTGTTTAG
CCAGCAGAATCAGCAACCCATACCGAGCCAAGTAGCCACGGACTCGAAGG
CAAGTGCAGGTGGCGCCACCCCGGTTCCCAGCAAATCGCAGACCACCAAC
AATCCCTGGCTGGATCTTTTCGCCGACTTGGATCCCTTAGCCAATCCGCA
AGCCTTCGATTTAAAACTGAGCGGCGGACGCAGTGTGGCCGAGCAGACCT
GAAAGCTTTCTAGACCAT
BS07804.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10566-RB | 1236 | CG10566-PB | 1..1236 | 17..1252 | 6180 | 100 | Plus |
CG10566-RA | 1236 | CG10566-PA | 1..1236 | 17..1252 | 6180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10566-RB | 1462 | CG10566-RB | 79..1314 | 17..1252 | 6180 | 100 | Plus |
CG10566-RA | 1735 | CG10566-RA | 352..1587 | 17..1252 | 6180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21131797..21132378 | 17..598 | 2910 | 100 | Plus |
3L | 28110227 | 3L | 21132749..21133162 | 839..1252 | 2070 | 100 | Plus |
3L | 28110227 | 3L | 21132446..21132687 | 597..838 | 1210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:58:40 has no hits.
BS07804.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:03 Download gff for
BS07804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 1..1236 | 17..1252 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:45 Download gff for
BS07804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 352..1589 | 17..1256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:41 Download gff for
BS07804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 352..1586 | 17..1251 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:03 Download gff for
BS07804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 352..1589 | 17..1256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:13 Download gff for
BS07804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 352..1586 | 17..1251 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:13 Download gff for
BS07804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21131797..21132378 | 17..598 | 100 | -> | Plus |
3L | 21132448..21132687 | 599..838 | 100 | -> | Plus |
3L | 21132749..21133161 | 839..1251 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:41 Download gff for
BS07804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21124897..21125478 | 17..598 | 100 | -> | Plus |
arm_3L | 21125548..21125787 | 599..838 | 100 | -> | Plus |
arm_3L | 21125849..21126261 | 839..1251 | 100 | | Plus |
BS07804.pep Sequence
Translation from 16 to 1251
> BS07804.pep
MLKSEVQHQFWITKKVVQRKLGTKEDKHIISSDAELDSKIEVFKSISDTS
LNLCKIIDQYQERLCILSQEECVFGRFLKEAGKRSRTTGGSIAHTAKAVS
FAGQQRMCVRVPLLRLQHEVDVFRCRAIKDTEQTLQTMEKERTEYRAALS
WMKSASQELDPDTGKGLDKFRTAQAHVRVAKHNFDGYSMDSIQKIDLLAA
ARCNMYSHALVAYVTELKNFAQKAASTFQTISKALIIKPKYDFCVLKELS
QNEGSTEEVPPIEAVDKDQSLFFANEYQDKLETQPEIKESEEDKPSAPPN
ACGDNESLLIELSKQLEDSPLIDAPLDEDIPAQNSTNKLWSRLFSQQNQQ
PIPSQVATDSKASAGGATPVPSKSQTTNNPWLDLFADLDPLANPQAFDLK
LSGGRSVAEQT*
BS07804.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10566-PB | 411 | CG10566-PB | 1..411 | 1..411 | 2105 | 100 | Plus |
CG10566-PA | 411 | CG10566-PA | 1..411 | 1..411 | 2105 | 100 | Plus |