Clone BS07804 Report

Search the DGRC for BS07804

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG10566-RA
Protein status:BS07804.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07804.3prime Sequence

948 bp (910 high quality bases) assembled on 2006-01-06

> BS07804.3prime
ATGGTCTAGAAAGCTTTCAGGTCTGCTCGGCCACACTGCGTCCGCCGCTC
AGTTTTAAATCGAAGGCTTGCGGATTGGCTAAGGGATCCAAGTCGGCGAA
AAGATCCAGCCAGGGATTGTTGGTGGTCTGCGATTTGCTGGGAACCGGGG
TGGCGCCACCTGCACTTGCCTTCGAGTCCGTGGCTACTTGGCTCGGTATG
GGTTGCTGATTCTGCTGGCTAAACAAGCGGGACCATAGCTTGTTAGTGCT
ATTTTGGGCAGGTATATCTTCATCCAGCGGCGCATCTATTAGAGGACTGT
CCTCCAGCTGCTTGGAAAGCTCAATAAGCAAGGATTCATTGTCGCCGCAG
GCATTGGGAGGTGCACTTGGTTTGTCCTCTTCGGACTCCTTGATTTCCGG
CTGGGTTTCCAGCTTGTCCTGGTACTCGTTAGCAAAGAATAACGACTGGT
CCTTATCCACGGCTTCGATTGGCGGCACTTCCTCTGTGGATCCTTCATTT
TGAGACAGTTCCTTTAGCACACAGAAGTCGTACTTGGGCTTTATAATCAA
GGCCTTAGATATGGTCTGGAATGTGGAGGCGGCCTTCTGGGCAAAGTTCT
TCAACTCGGTAACGTAGGCCACCAGAGCATGGGAGTACATGTTGCATCGG
GCAGCTGCTAGTAAATCAATCTTCTGAATGGAATCCATTGAGTAACCATC
GAAATTATGCTTGGCCACCCGCACGTGGGCCTGTGCCGTGCGAAACTTGT
CCAGACCCTTGCCCGTATCGGGATCCAGTTCCTGGCTGGCGGACTTCATC
CAGGAGAGAGCGGCGCGGTATTCCGTGCGCTCCTTCTCCATCGTCTGGAG
GGTCTGCTCCGTGTCCTTTATCGCCCGGCAGCGGAACACATCGACTTCGT
GCTGGAGCCGCANGAGCGGCACCCGCACGCACATCCTCTGTTGTCCAG

BS07804.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10566-PA 1236 CG10566-RA 305..1236 948..17 4641 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 00:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10566-RB 1462 CG10566-RB 383..1314 948..17 4649 99.9 Minus
CG10566-RA 1735 CG10566-RA 656..1587 948..17 4649 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 00:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21132749..21133162 430..17 2070 100 Minus
3L 28110227 3L 21132101..21132378 948..671 1379 99.6 Minus
3L 28110227 3L 21132446..21132687 672..431 1210 100 Minus
Blast to na_te.dros performed on 2015-02-09 00:57:54 has no hits.

BS07804.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:10 Download gff for BS07804.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10566-PA 305..1236 17..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:23 Download gff for BS07804.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10566-PA 305..1236 17..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:50:06 Download gff for BS07804.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 656..1589 13..948 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:05:22 Download gff for BS07804.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 656..1589 13..948 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:05:22 Download gff for BS07804.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21132101..21132378 671..948 99 -> Minus
3L 21132448..21132687 431..670 100 -> Minus
3L 21132749..21133164 13..430 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:50:06 Download gff for BS07804.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21125201..21125478 671..948 99 -> Minus
arm_3L 21125548..21125787 431..670 100 -> Minus
arm_3L 21125849..21126264 13..430 99   Minus

BS07804.5prime Sequence

886 bp (811 high quality bases) assembled on 2006-01-06

> BS07804.5prime
GAAGTTATCAGTCGACATGCTCAAGTCGGAGGTTCAGCACCAGTTCTGGA
TTACCAAAAAGGTGGTGCAGCGCAAGCTCGGAACGAAGGAGGACAAGCAC
ATAATATCCTCGGACGCGGAGCTGGATTCCAAGATCGAGGTGTTCAAATC
GATATCGGACACCAGCTTGAACCTGTGCAAAATCATTGACCAATACCAGG
AGCGCCTATGCATCCTGTCGCAGGAGGAGTGTGTGTTCGGCAGGTTCCTC
AAGGAGGCGGGAAAGCGGAGCAGAACCACGGGCGGTAGTATCGCCCACAC
GGCCAAGGCCGTATCCTTCGCTGGACAACAGAGGATGTGCGTGCGGGTGC
CGCTCCTGCGGCTCCAGCACGAAGTCGATGTGTTCCGCTGCCGGGCGATA
AAGGACACGGAGCAGACCCTCCAGACGATGGAGAAGGAGCGCACGGAATA
CCGCGCCGCTCTCTCCTGGATGAAGTCCGCCAGCCAGGAACTGGATCCCG
ATACGGGCAAGGGTCTGGACAAGTTTCGCACGGCACAGGCCCACGTGCGG
GTGGCCAAGCATAATTTCGATGGTTACTCAATGGATTCCATTCAGAAGAT
TGATTTACTAGCAGCTGCCCGATGCAACATGTACTCCCATGCTCTGGTGG
CCTACGTTACCGAGTTGAAGAACTTTGCCCAGAAGGCCGCCTCCACATTC
CAGACCATATCTAAGGCCTTGATTATAAAGCCCAAGTACGACTTCTGTGT
GCTAAAGGAACTGTCTCAAAATGAAGGATCCACAGAGGAAGTGCCGCCAA
TCGAAGCCGTGGATAAAGACCAGTCGTTATTCTTTGCTNACGAGTACCAG
GACAAGCTGGAAACCCAGCCGGAAATCAAGGAGTCC

BS07804.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10566-PA 1236 CG10566-RA 1..870 17..886 4306 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10566-RB 1462 CG10566-RB 79..948 17..886 4324 99.8 Plus
CG10566-RA 1735 CG10566-RA 352..1221 17..886 4324 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21131797..21132378 17..598 2910 100 Plus
3L 28110227 3L 21132446..21132687 597..838 1195 99.6 Plus
3L 28110227 3L 21132750..21132796 840..886 235 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:01:00 has no hits.

BS07804.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:12 Download gff for BS07804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10566-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:24 Download gff for BS07804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10566-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:23:41 Download gff for BS07804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 352..1221 17..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:16 Download gff for BS07804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 352..1221 17..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:16 Download gff for BS07804.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21132749..21132796 839..886 97   Plus
3L 21131797..21132378 17..598 100 -> Plus
3L 21132448..21132687 599..838 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:23:41 Download gff for BS07804.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21124897..21125478 17..598 100 -> Plus
arm_3L 21125548..21125787 599..838 99 -> Plus
arm_3L 21125849..21125896 839..886 97   Plus

BS07804.complete Sequence

1268 bp (1268 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ635992

> BS07804.complete
GAAGTTATCAGTCGACATGCTCAAGTCGGAGGTTCAGCACCAGTTCTGGA
TTACCAAAAAGGTGGTGCAGCGCAAGCTCGGAACGAAGGAGGACAAGCAC
ATAATATCCTCGGACGCGGAGCTGGATTCCAAGATCGAGGTGTTCAAATC
GATATCGGACACCAGCTTGAACCTGTGCAAAATCATTGACCAATACCAGG
AGCGCCTATGCATCCTGTCGCAGGAGGAGTGTGTGTTCGGCAGGTTCCTC
AAGGAGGCGGGAAAGCGGAGCAGAACCACGGGCGGTAGTATCGCCCACAC
GGCCAAGGCCGTATCCTTCGCTGGACAACAGAGGATGTGCGTGCGGGTGC
CGCTCCTGCGGCTCCAGCACGAAGTCGATGTGTTCCGCTGCCGGGCGATA
AAGGACACGGAGCAGACCCTCCAGACGATGGAGAAGGAGCGCACGGAATA
CCGCGCCGCTCTCTCCTGGATGAAGTCCGCCAGCCAGGAACTGGATCCCG
ATACGGGCAAGGGTCTGGACAAGTTTCGCACGGCACAGGCCCACGTGCGG
GTGGCCAAGCATAATTTCGATGGTTACTCAATGGATTCCATTCAGAAGAT
TGATTTACTAGCAGCTGCCCGATGCAACATGTACTCCCATGCTCTGGTGG
CCTACGTTACCGAGTTGAAGAACTTTGCCCAGAAGGCCGCCTCCACATTC
CAGACCATATCTAAGGCCTTGATTATAAAGCCCAAGTACGACTTCTGTGT
GCTAAAGGAACTGTCTCAAAATGAAGGATCCACAGAGGAAGTGCCGCCAA
TCGAAGCCGTGGATAAGGACCAGTCGTTATTCTTTGCTAACGAGTACCAG
GACAAGCTGGAAACCCAGCCGGAAATCAAGGAGTCCGAAGAGGACAAACC
AAGTGCACCTCCCAATGCCTGCGGCGACAATGAATCCTTGCTTATTGAGC
TTTCCAAGCAGCTGGAGGACAGTCCTCTAATAGATGCGCCGCTGGATGAA
GATATACCTGCCCAAAATAGCACTAACAAGCTATGGTCCCGCTTGTTTAG
CCAGCAGAATCAGCAACCCATACCGAGCCAAGTAGCCACGGACTCGAAGG
CAAGTGCAGGTGGCGCCACCCCGGTTCCCAGCAAATCGCAGACCACCAAC
AATCCCTGGCTGGATCTTTTCGCCGACTTGGATCCCTTAGCCAATCCGCA
AGCCTTCGATTTAAAACTGAGCGGCGGACGCAGTGTGGCCGAGCAGACCT
GAAAGCTTTCTAGACCAT

BS07804.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10566-RB 1236 CG10566-PB 1..1236 17..1252 6180 100 Plus
CG10566-RA 1236 CG10566-PA 1..1236 17..1252 6180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10566-RB 1462 CG10566-RB 79..1314 17..1252 6180 100 Plus
CG10566-RA 1735 CG10566-RA 352..1587 17..1252 6180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21131797..21132378 17..598 2910 100 Plus
3L 28110227 3L 21132749..21133162 839..1252 2070 100 Plus
3L 28110227 3L 21132446..21132687 597..838 1210 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:58:40 has no hits.

BS07804.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:03 Download gff for BS07804.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 1..1236 17..1252 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:45 Download gff for BS07804.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 352..1589 17..1256 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:41 Download gff for BS07804.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 352..1586 17..1251 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:03 Download gff for BS07804.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 352..1589 17..1256 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:13 Download gff for BS07804.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 352..1586 17..1251 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:13 Download gff for BS07804.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21131797..21132378 17..598 100 -> Plus
3L 21132448..21132687 599..838 100 -> Plus
3L 21132749..21133161 839..1251 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:41 Download gff for BS07804.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21124897..21125478 17..598 100 -> Plus
arm_3L 21125548..21125787 599..838 100 -> Plus
arm_3L 21125849..21126261 839..1251 100   Plus

BS07804.pep Sequence

Translation from 16 to 1251

> BS07804.pep
MLKSEVQHQFWITKKVVQRKLGTKEDKHIISSDAELDSKIEVFKSISDTS
LNLCKIIDQYQERLCILSQEECVFGRFLKEAGKRSRTTGGSIAHTAKAVS
FAGQQRMCVRVPLLRLQHEVDVFRCRAIKDTEQTLQTMEKERTEYRAALS
WMKSASQELDPDTGKGLDKFRTAQAHVRVAKHNFDGYSMDSIQKIDLLAA
ARCNMYSHALVAYVTELKNFAQKAASTFQTISKALIIKPKYDFCVLKELS
QNEGSTEEVPPIEAVDKDQSLFFANEYQDKLETQPEIKESEEDKPSAPPN
ACGDNESLLIELSKQLEDSPLIDAPLDEDIPAQNSTNKLWSRLFSQQNQQ
PIPSQVATDSKASAGGATPVPSKSQTTNNPWLDLFADLDPLANPQAFDLK
LSGGRSVAEQT*

BS07804.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10566-PB 411 CG10566-PB 1..411 1..411 2105 100 Plus
CG10566-PA 411 CG10566-PA 1..411 1..411 2105 100 Plus