Clone BS07805 Report

Search the DGRC for BS07805

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:5
Vector:pDNR-Dual
Associated Gene/Transcripttmod-RB
Protein status:BS07805.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07805.3prime Sequence

936 bp (895 high quality bases) assembled on 2006-01-06

> BS07805.3prime
ATGGTCTAGAAAGCTTTTATTTACGCTGGTTCAGGCGTTTCACACGTATT
CTGTCGATGTTGCGCTGCAGGTGAGCGGCCACTCGGTGGCGGGCGTCGTT
GAACTCCAGGTGCAAGCCAAGGCGCAGCAGCGACGAGTTCTTCTCCACCA
GGTCGGTGATTTCCATCTCGATCTTGTTGCCCAGAACCGCAGACCGCTGA
TTGGAGGCCCTAAACTCCTCGATGGTGTGGCACTTGAGCAGGGCTTGCAC
CAACTTAACAATCACGGGCGGACTGATAAAGTTGGTCTCGACATTTAATA
CTCTCAGGGTTTTGCTCTTCTCTATGGCCGCGGCTAACAGGAGGGCTGTC
TTGTCGGTGAGGCCCACATTTGTTAGCGAGAGGACTTCCAAATGTTCGTT
CTGAGGCAGTGCGGCAAACAGTTGCTCGAGTTTCTCGTCCGAGATGTTCT
TAATGTTGTTCAAGTTGAGGTCAATCAGCTTGGAGTCATCGTCCTTGACC
CGCTTGATGGATTCCTCCACATCTGTGTTGTTGGGCGGATCCATAGGGAA
GAGCTTCTGCTGAGTGGATTTCGTAATGCCATCCCATCCCAGGCCCACGG
GCTGACCCTTGTTGAGCAAGGAGGCGTGGTACTGGTCCTGATTCATCATC
GAGTGGAAGCCGAGGATGGCGGCCAGATCGATGATCTCCTCCTGCGTGGC
ATCGTTAAGGGCGTGTTCGTACTCCTCGCCCATGTCAATGGCGATTTGTT
CTTCGGCCTCGATGTCGCGGGCATCCCTTGGCGGTGGGACCCACTTCTTT
CCACGAACCTTGCCCTGAACGAACGGCTCGAACTCCGGCTGATCCGGGGT
CTCGATGGCCTGCTTATTGATGTGCTCGATCAGCTGCTTGCGATTGAGAG
GCCCGGTGGCTTCCTTGGTGCACTCATAGCTATTGC

BS07805.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1539-PD 1320 tmod-RD 401..1320 936..17 4600 100 Minus
CG1539-PF 1320 tmod-RF 401..1320 936..17 4600 100 Minus
CG1539-PC 1230 tmod-RC 311..1230 936..17 4600 100 Minus
CG1539-PA 1104 tmod-RA 185..1104 936..17 4600 100 Minus
CG1539-PB 1212 tmod-RB 293..1212 936..17 4600 100 Minus
CG1539-PE 1320 tmod-RE 401..1320 936..17 4600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
tmod-RJ 2753 CG1539-RJ 697..1618 936..15 4610 100 Minus
tmod-RI 3000 CG1539-RI 944..1865 936..15 4610 100 Minus
tmod-RH 2717 CG1539-RH 661..1582 936..15 4610 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30572048..30572535 936..449 2440 100 Minus
3R 32079331 3R 30572597..30572850 450..197 1270 100 Minus
3R 32079331 3R 30572922..30573072 199..49 755 100 Minus
Blast to na_te.dros performed on 2015-02-02 20:16:04 has no hits.

BS07805.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:13 Download gff for BS07805.3prime
Subject Subject Range Query Range Percent Splice Strand
tmod-PC 311..1230 17..936 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:26 Download gff for BS07805.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1539-PE 401..1320 17..936 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:03:24 Download gff for BS07805.3prime
Subject Subject Range Query Range Percent Splice Strand
tmod-RH 661..1582 15..936 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:14:30 Download gff for BS07805.3prime
Subject Subject Range Query Range Percent Splice Strand
tmod-RH 661..1582 15..936 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:14:30 Download gff for BS07805.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30572048..30572535 449..936 100 -> Minus
3R 30572599..30572850 197..448 100 -> Minus
3R 30572925..30573072 49..196 100 -> Minus
3R 30577179..30577212 15..48 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:03:24 Download gff for BS07805.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26397770..26398257 449..936 100 -> Minus
arm_3R 26398321..26398572 197..448 100 -> Minus
arm_3R 26398647..26398794 49..196 100 -> Minus
arm_3R 26402901..26402934 15..48 100   Minus

BS07805.5prime Sequence

964 bp (889 high quality bases) assembled on 2006-01-06

> BS07805.5prime
GAAGTTATCAGTCGACATGGAGAGTGCCCTGCCGGTGGCCGAGTTTCAGC
AGATAAAGCTGCGTCCGGTGCCAAAGGTCAAACGCCGAGCCCCTCAGCCG
CCAGTGAGCCTTCGCCTGAAGCATAAAAATACTTCTGCCACCACAAAGAC
AACCACGCTCACCACCCCCGCCAAACTGTATGGCAAGGATCTGAGTGAGT
ACGATGATGTGGATGTGGAGAGCCTGCTGGCCCAGCTCTCCCCCGAGGAG
ATAACCATACTGGCCAAAGAAGTGGATCCCGATGACAACTTCCTGCCGCC
AGACCAGCGCAATAGCTATGAGTGCACCAAGGAAGCCACCGGGCCTCTCA
ATCGCAAGCAGCTGATCGAGCACATCAATAAGCAGGCCATCGAGACCCCG
GATCAGCCGGAGTTCGAGCCGTTCGTTCAGGGCAAGGTTCGTGGAAAGAA
GTGGGTCCCACCGCCAAGGGATGCCCGCGACATCGAGGCCGAAGAACAAA
TCGCCATTGACATGGGCGAGGAGTACGAACACGCCCTTAACGATGCCACG
CAGGAGGAGATCATCGATCTGGCCGCCATCCTCGGCTTCCACTCGATGAT
GAATCAGGACCAGTACCACGCCTCCTTGCTCAACAAGGGTCAGCCCGTGG
GCCTGGGATGGGATGGCATTACGAAATCCACTCAGCAGAAGCTCTTCCCT
ATGGATCCGCCCAACAACACAGATGTGGAGGAATCCATCAAGCGGGTCAA
GGACGATGACTCCAAGCTGATTGACCTCAACTTGAACAACATTAAGAACA
TCTCGGACGAGAAACTCGAGCAACTGTTTGCCGCACTGCCTCAGAACGAA
CATTTGGAAGTCCTCTCGCTAACAATGTGGGGCTCACCGACAAGACAGCC
CTCCTGTTAGCCGCGGCCATAGAGAAGAGCAAAACCCTGAGAGTATTAAA
TGTCGAGACCACTT

BS07805.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1539-PB 1212 tmod-RB 1..859 17..875 4295 100 Plus
CG1539-PD 1320 tmod-RD 223..967 131..875 3725 100 Plus
CG1539-PF 1320 tmod-RF 223..967 131..875 3725 100 Plus
CG1539-PC 1230 tmod-RC 133..877 131..875 3725 100 Plus
CG1539-PA 1104 tmod-RA 7..751 131..875 3725 100 Plus
CG1539-PE 1320 tmod-RE 223..967 131..875 3725 100 Plus
CG1539-PB 1212 tmod-RB 859..946 874..961 415 98.8 Plus
CG1539-PD 1320 tmod-RD 967..1054 874..961 415 98.8 Plus
CG1539-PF 1320 tmod-RF 967..1054 874..961 415 98.8 Plus
CG1539-PC 1230 tmod-RC 877..964 874..961 415 98.8 Plus
CG1539-PA 1104 tmod-RA 751..838 874..961 415 98.8 Plus
CG1539-PE 1320 tmod-RE 967..1054 874..961 415 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
tmod-RB 2508 CG1539-RB 160..1105 17..961 4690 99.8 Plus
tmod-RJ 2753 CG1539-RJ 519..1350 131..961 4120 99.8 Plus
tmod-RI 3000 CG1539-RI 766..1597 131..961 4120 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30572023..30572535 284..796 2565 100 Plus
3R 32079331 3R 30572597..30572764 795..961 775 98.8 Plus
3R 32079331 3R 30571809..30571962 131..284 770 100 Plus
3R 32079331 3R 30571316..30571429 17..130 570 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:59:26 has no hits.

BS07805.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:14 Download gff for BS07805.5prime
Subject Subject Range Query Range Percent Splice Strand
tmod-PB 1..950 17..964 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:28 Download gff for BS07805.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1539-PB 1..950 17..964 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:23:28 Download gff for BS07805.5prime
Subject Subject Range Query Range Percent Splice Strand
tmod-RB 150..1109 7..964 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:25:27 Download gff for BS07805.5prime
Subject Subject Range Query Range Percent Splice Strand
tmod-RB 150..1109 7..964 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:25:27 Download gff for BS07805.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30571306..30571429 7..130 96 -> Plus
3R 30571809..30571961 131..283 100 -> Plus
3R 30572023..30572535 284..796 100 -> Plus
3R 30572599..30572768 797..964 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:23:28 Download gff for BS07805.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26397028..26397151 7..130 96 -> Plus
arm_3R 26397531..26397683 131..283 100 -> Plus
arm_3R 26397745..26398257 284..796 100 -> Plus
arm_3R 26398321..26398490 797..964 98   Plus

BS07805.complete Sequence

1244 bp (1244 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ635993

> BS07805.complete
GAAGTTATCAGTCGACATGGAGAGTGCCCTGCCGGTGGCCGAGTTTCAGC
AGATAAAGCTGCGTCCGGTGCCAAAGGTCAAACGCCGAGCCCCTCAGCCG
CCAGTGAGCCTTCGCCTGAAGCATAAAAATACTTCTGCCACCACAAAGAC
AACCACGCTCACCACCCCCGCCAAACTGTATGGCAAGGATCTGAGTGAGT
ACGATGATGTGGATGTGGAGAGCCTGCTGGCCCAGCTCTCCCCCGAGGAG
ATAACCATACTGGCCAAAGAAGTGGATCCCGATGACAACTTCCTGCCGCC
AGACCAGCGCAATAGCTATGAGTGCACCAAGGAAGCCACCGGGCCTCTCA
ATCGCAAGCAGCTGATCGAGCACATCAATAAGCAGGCCATCGAGACCCCG
GATCAGCCGGAGTTCGAGCCGTTCGTTCAGGGCAAGGTTCGTGGAAAGAA
GTGGGTCCCACCGCCAAGGGATGCCCGCGACATCGAGGCCGAAGAACAAA
TCGCCATTGACATGGGCGAGGAGTACGAACACGCCCTTAACGATGCCACG
CAGGAGGAGATCATCGATCTGGCCGCCATCCTCGGCTTCCACTCGATGAT
GAATCAGGACCAGTACCACGCCTCCTTGCTCAACAAGGGTCAGCCCGTGG
GCCTGGGATGGGATGGCATTACGAAATCCACTCAGCAGAAGCTCTTCCCT
ATGGATCCGCCCAACAACACAGATGTGGAGGAATCCATCAAGCGGGTCAA
GGACGATGACTCCAAGCTGATTGACCTCAACTTGAACAACATTAAGAACA
TCTCGGACGAGAAACTCGAGCAACTGTTTGCCGCACTGCCTCAGAACGAA
CATTTGGAAGTCCTCTCGCTAACAAATGTGGGCCTCACCGACAAGACAGC
CCTCCTGTTAGCCGCGGCCATAGAGAAGAGCAAAACCCTGAGAGTATTAA
ATGTCGAGACCAACTTTATCAGTCCGCCCGTGATTGTTAAGTTGGTGCAA
GCCCTGCTCAAGTGCCACACCATCGAGGAGTTTAGGGCCTCCAATCAGCG
GTCTGCGGTTCTGGGCAACAAGATCGAGATGGAAATCACCGACCTGGTGG
AGAAGAACTCGTCGCTGCTGCGCCTTGGCTTGCACCTGGAGTTCAACGAC
GCCCGCCACCGAGTGGCCGCTCACCTGCAGCGCAACATCGACAGAATACG
TGTGAAACGCCTGAACCAGCGTAAATAAAAGCTTTCTAGACCAT

BS07805.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
tmod-RB 1212 CG1539-PB 1..1212 17..1228 6060 100 Plus
tmod-RJ 1230 CG1539-PJ 133..1230 131..1228 5490 100 Plus
tmod-RI 1320 CG1539-PI 223..1320 131..1228 5490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
tmod-RB 2508 CG1539-RB 160..1373 17..1230 6070 100 Plus
tmod-RJ 2753 CG1539-RJ 519..1618 131..1230 5500 100 Plus
tmod-RI 3000 CG1539-RI 766..1865 131..1230 5500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30572023..30572535 284..796 2565 100 Plus
3R 32079331 3R 30572597..30572850 795..1048 1270 100 Plus
3R 32079331 3R 30571809..30571962 131..284 770 100 Plus
3R 32079331 3R 30572922..30573072 1046..1196 755 100 Plus
3R 32079331 3R 30571316..30571429 17..130 570 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:03:11 has no hits.

BS07805.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:54 Download gff for BS07805.complete
Subject Subject Range Query Range Percent Splice Strand
tmod-RB 1..1212 17..1228 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:34 Download gff for BS07805.complete
Subject Subject Range Query Range Percent Splice Strand
tmod-RB 150..1373 7..1230 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:14 Download gff for BS07805.complete
Subject Subject Range Query Range Percent Splice Strand
tmod-RB 160..1369 17..1226 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:54 Download gff for BS07805.complete
Subject Subject Range Query Range Percent Splice Strand
tmod-RB 150..1373 7..1230 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:14 Download gff for BS07805.complete
Subject Subject Range Query Range Percent Splice Strand
tmod-RB 160..1369 17..1226 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:14 Download gff for BS07805.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30571316..30571429 17..130 100 -> Plus
3R 30571809..30571961 131..283 100 -> Plus
3R 30572023..30572535 284..796 100 -> Plus
3R 30572599..30572850 797..1048 100 -> Plus
3R 30572925..30573072 1049..1196 100 -> Plus
3R 30577179..30577208 1197..1226 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:14 Download gff for BS07805.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26397038..26397151 17..130 100 -> Plus
arm_3R 26397531..26397683 131..283 100 -> Plus
arm_3R 26397745..26398257 284..796 100 -> Plus
arm_3R 26398321..26398572 797..1048 100 -> Plus
arm_3R 26398647..26398794 1049..1196 100 -> Plus
arm_3R 26402901..26402930 1197..1226 100   Plus

BS07805.pep Sequence

Translation from 16 to 1227

> BS07805.pep
MESALPVAEFQQIKLRPVPKVKRRAPQPPVSLRLKHKNTSATTKTTTLTT
PAKLYGKDLSEYDDVDVESLLAQLSPEEITILAKEVDPDDNFLPPDQRNS
YECTKEATGPLNRKQLIEHINKQAIETPDQPEFEPFVQGKVRGKKWVPPP
RDARDIEAEEQIAIDMGEEYEHALNDATQEEIIDLAAILGFHSMMNQDQY
HASLLNKGQPVGLGWDGITKSTQQKLFPMDPPNNTDVEESIKRVKDDDSK
LIDLNLNNIKNISDEKLEQLFAALPQNEHLEVLSLTNVGLTDKTALLLAA
AIEKSKTLRVLNVETNFISPPVIVKLVQALLKCHTIEEFRASNQRSAVLG
NKIEMEITDLVEKNSSLLRLGLHLEFNDARHRVAAHLQRNIDRIRVKRLN
QRK*

BS07805.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
tmod-PB 403 CG1539-PB 1..403 1..403 2053 100 Plus
tmod-PI 439 CG1539-PI 66..439 30..403 1864 98.1 Plus
tmod-PL 439 CG1539-PL 66..439 30..403 1864 98.1 Plus
tmod-PA 367 CG1539-PA 3..367 39..403 1860 100 Plus
tmod-PH 372 CG1539-PH 8..372 39..403 1860 100 Plus