Clone Sequence Records
BS07805.3prime Sequence
936 bp (895 high quality bases) assembled on 2006-01-06
> BS07805.3prime
ATGGTCTAGAAAGCTTTTATTTACGCTGGTTCAGGCGTTTCACACGTATT
CTGTCGATGTTGCGCTGCAGGTGAGCGGCCACTCGGTGGCGGGCGTCGTT
GAACTCCAGGTGCAAGCCAAGGCGCAGCAGCGACGAGTTCTTCTCCACCA
GGTCGGTGATTTCCATCTCGATCTTGTTGCCCAGAACCGCAGACCGCTGA
TTGGAGGCCCTAAACTCCTCGATGGTGTGGCACTTGAGCAGGGCTTGCAC
CAACTTAACAATCACGGGCGGACTGATAAAGTTGGTCTCGACATTTAATA
CTCTCAGGGTTTTGCTCTTCTCTATGGCCGCGGCTAACAGGAGGGCTGTC
TTGTCGGTGAGGCCCACATTTGTTAGCGAGAGGACTTCCAAATGTTCGTT
CTGAGGCAGTGCGGCAAACAGTTGCTCGAGTTTCTCGTCCGAGATGTTCT
TAATGTTGTTCAAGTTGAGGTCAATCAGCTTGGAGTCATCGTCCTTGACC
CGCTTGATGGATTCCTCCACATCTGTGTTGTTGGGCGGATCCATAGGGAA
GAGCTTCTGCTGAGTGGATTTCGTAATGCCATCCCATCCCAGGCCCACGG
GCTGACCCTTGTTGAGCAAGGAGGCGTGGTACTGGTCCTGATTCATCATC
GAGTGGAAGCCGAGGATGGCGGCCAGATCGATGATCTCCTCCTGCGTGGC
ATCGTTAAGGGCGTGTTCGTACTCCTCGCCCATGTCAATGGCGATTTGTT
CTTCGGCCTCGATGTCGCGGGCATCCCTTGGCGGTGGGACCCACTTCTTT
CCACGAACCTTGCCCTGAACGAACGGCTCGAACTCCGGCTGATCCGGGGT
CTCGATGGCCTGCTTATTGATGTGCTCGATCAGCTGCTTGCGATTGAGAG
GCCCGGTGGCTTCCTTGGTGCACTCATAGCTATTGC
BS07805.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1539-PD | 1320 | tmod-RD | 401..1320 | 936..17 | 4600 | 100 | Minus |
CG1539-PF | 1320 | tmod-RF | 401..1320 | 936..17 | 4600 | 100 | Minus |
CG1539-PC | 1230 | tmod-RC | 311..1230 | 936..17 | 4600 | 100 | Minus |
CG1539-PA | 1104 | tmod-RA | 185..1104 | 936..17 | 4600 | 100 | Minus |
CG1539-PB | 1212 | tmod-RB | 293..1212 | 936..17 | 4600 | 100 | Minus |
CG1539-PE | 1320 | tmod-RE | 401..1320 | 936..17 | 4600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tmod-RJ | 2753 | CG1539-RJ | 697..1618 | 936..15 | 4610 | 100 | Minus |
tmod-RI | 3000 | CG1539-RI | 944..1865 | 936..15 | 4610 | 100 | Minus |
tmod-RH | 2717 | CG1539-RH | 661..1582 | 936..15 | 4610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30572048..30572535 | 936..449 | 2440 | 100 | Minus |
3R | 32079331 | 3R | 30572597..30572850 | 450..197 | 1270 | 100 | Minus |
3R | 32079331 | 3R | 30572922..30573072 | 199..49 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 20:16:04 has no hits.
BS07805.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:13 Download gff for
BS07805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-PC | 311..1230 | 17..936 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:26 Download gff for
BS07805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1539-PE | 401..1320 | 17..936 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:03:24 Download gff for
BS07805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RH | 661..1582 | 15..936 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:14:30 Download gff for
BS07805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RH | 661..1582 | 15..936 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:14:30 Download gff for
BS07805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30572048..30572535 | 449..936 | 100 | -> | Minus |
3R | 30572599..30572850 | 197..448 | 100 | -> | Minus |
3R | 30572925..30573072 | 49..196 | 100 | -> | Minus |
3R | 30577179..30577212 | 15..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:03:24 Download gff for
BS07805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26397770..26398257 | 449..936 | 100 | -> | Minus |
arm_3R | 26398321..26398572 | 197..448 | 100 | -> | Minus |
arm_3R | 26398647..26398794 | 49..196 | 100 | -> | Minus |
arm_3R | 26402901..26402934 | 15..48 | 100 | | Minus |
BS07805.5prime Sequence
964 bp (889 high quality bases) assembled on 2006-01-06
> BS07805.5prime
GAAGTTATCAGTCGACATGGAGAGTGCCCTGCCGGTGGCCGAGTTTCAGC
AGATAAAGCTGCGTCCGGTGCCAAAGGTCAAACGCCGAGCCCCTCAGCCG
CCAGTGAGCCTTCGCCTGAAGCATAAAAATACTTCTGCCACCACAAAGAC
AACCACGCTCACCACCCCCGCCAAACTGTATGGCAAGGATCTGAGTGAGT
ACGATGATGTGGATGTGGAGAGCCTGCTGGCCCAGCTCTCCCCCGAGGAG
ATAACCATACTGGCCAAAGAAGTGGATCCCGATGACAACTTCCTGCCGCC
AGACCAGCGCAATAGCTATGAGTGCACCAAGGAAGCCACCGGGCCTCTCA
ATCGCAAGCAGCTGATCGAGCACATCAATAAGCAGGCCATCGAGACCCCG
GATCAGCCGGAGTTCGAGCCGTTCGTTCAGGGCAAGGTTCGTGGAAAGAA
GTGGGTCCCACCGCCAAGGGATGCCCGCGACATCGAGGCCGAAGAACAAA
TCGCCATTGACATGGGCGAGGAGTACGAACACGCCCTTAACGATGCCACG
CAGGAGGAGATCATCGATCTGGCCGCCATCCTCGGCTTCCACTCGATGAT
GAATCAGGACCAGTACCACGCCTCCTTGCTCAACAAGGGTCAGCCCGTGG
GCCTGGGATGGGATGGCATTACGAAATCCACTCAGCAGAAGCTCTTCCCT
ATGGATCCGCCCAACAACACAGATGTGGAGGAATCCATCAAGCGGGTCAA
GGACGATGACTCCAAGCTGATTGACCTCAACTTGAACAACATTAAGAACA
TCTCGGACGAGAAACTCGAGCAACTGTTTGCCGCACTGCCTCAGAACGAA
CATTTGGAAGTCCTCTCGCTAACAATGTGGGGCTCACCGACAAGACAGCC
CTCCTGTTAGCCGCGGCCATAGAGAAGAGCAAAACCCTGAGAGTATTAAA
TGTCGAGACCACTT
BS07805.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1539-PB | 1212 | tmod-RB | 1..859 | 17..875 | 4295 | 100 | Plus |
CG1539-PD | 1320 | tmod-RD | 223..967 | 131..875 | 3725 | 100 | Plus |
CG1539-PF | 1320 | tmod-RF | 223..967 | 131..875 | 3725 | 100 | Plus |
CG1539-PC | 1230 | tmod-RC | 133..877 | 131..875 | 3725 | 100 | Plus |
CG1539-PA | 1104 | tmod-RA | 7..751 | 131..875 | 3725 | 100 | Plus |
CG1539-PE | 1320 | tmod-RE | 223..967 | 131..875 | 3725 | 100 | Plus |
CG1539-PB | 1212 | tmod-RB | 859..946 | 874..961 | 415 | 98.8 | Plus |
CG1539-PD | 1320 | tmod-RD | 967..1054 | 874..961 | 415 | 98.8 | Plus |
CG1539-PF | 1320 | tmod-RF | 967..1054 | 874..961 | 415 | 98.8 | Plus |
CG1539-PC | 1230 | tmod-RC | 877..964 | 874..961 | 415 | 98.8 | Plus |
CG1539-PA | 1104 | tmod-RA | 751..838 | 874..961 | 415 | 98.8 | Plus |
CG1539-PE | 1320 | tmod-RE | 967..1054 | 874..961 | 415 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tmod-RB | 2508 | CG1539-RB | 160..1105 | 17..961 | 4690 | 99.8 | Plus |
tmod-RJ | 2753 | CG1539-RJ | 519..1350 | 131..961 | 4120 | 99.8 | Plus |
tmod-RI | 3000 | CG1539-RI | 766..1597 | 131..961 | 4120 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30572023..30572535 | 284..796 | 2565 | 100 | Plus |
3R | 32079331 | 3R | 30572597..30572764 | 795..961 | 775 | 98.8 | Plus |
3R | 32079331 | 3R | 30571809..30571962 | 131..284 | 770 | 100 | Plus |
3R | 32079331 | 3R | 30571316..30571429 | 17..130 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:59:26 has no hits.
BS07805.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:14 Download gff for
BS07805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-PB | 1..950 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:28 Download gff for
BS07805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1539-PB | 1..950 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:23:28 Download gff for
BS07805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RB | 150..1109 | 7..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:25:27 Download gff for
BS07805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RB | 150..1109 | 7..964 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:25:27 Download gff for
BS07805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30571306..30571429 | 7..130 | 96 | -> | Plus |
3R | 30571809..30571961 | 131..283 | 100 | -> | Plus |
3R | 30572023..30572535 | 284..796 | 100 | -> | Plus |
3R | 30572599..30572768 | 797..964 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:23:28 Download gff for
BS07805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26397028..26397151 | 7..130 | 96 | -> | Plus |
arm_3R | 26397531..26397683 | 131..283 | 100 | -> | Plus |
arm_3R | 26397745..26398257 | 284..796 | 100 | -> | Plus |
arm_3R | 26398321..26398490 | 797..964 | 98 | | Plus |
BS07805.complete Sequence
1244 bp (1244 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ635993
> BS07805.complete
GAAGTTATCAGTCGACATGGAGAGTGCCCTGCCGGTGGCCGAGTTTCAGC
AGATAAAGCTGCGTCCGGTGCCAAAGGTCAAACGCCGAGCCCCTCAGCCG
CCAGTGAGCCTTCGCCTGAAGCATAAAAATACTTCTGCCACCACAAAGAC
AACCACGCTCACCACCCCCGCCAAACTGTATGGCAAGGATCTGAGTGAGT
ACGATGATGTGGATGTGGAGAGCCTGCTGGCCCAGCTCTCCCCCGAGGAG
ATAACCATACTGGCCAAAGAAGTGGATCCCGATGACAACTTCCTGCCGCC
AGACCAGCGCAATAGCTATGAGTGCACCAAGGAAGCCACCGGGCCTCTCA
ATCGCAAGCAGCTGATCGAGCACATCAATAAGCAGGCCATCGAGACCCCG
GATCAGCCGGAGTTCGAGCCGTTCGTTCAGGGCAAGGTTCGTGGAAAGAA
GTGGGTCCCACCGCCAAGGGATGCCCGCGACATCGAGGCCGAAGAACAAA
TCGCCATTGACATGGGCGAGGAGTACGAACACGCCCTTAACGATGCCACG
CAGGAGGAGATCATCGATCTGGCCGCCATCCTCGGCTTCCACTCGATGAT
GAATCAGGACCAGTACCACGCCTCCTTGCTCAACAAGGGTCAGCCCGTGG
GCCTGGGATGGGATGGCATTACGAAATCCACTCAGCAGAAGCTCTTCCCT
ATGGATCCGCCCAACAACACAGATGTGGAGGAATCCATCAAGCGGGTCAA
GGACGATGACTCCAAGCTGATTGACCTCAACTTGAACAACATTAAGAACA
TCTCGGACGAGAAACTCGAGCAACTGTTTGCCGCACTGCCTCAGAACGAA
CATTTGGAAGTCCTCTCGCTAACAAATGTGGGCCTCACCGACAAGACAGC
CCTCCTGTTAGCCGCGGCCATAGAGAAGAGCAAAACCCTGAGAGTATTAA
ATGTCGAGACCAACTTTATCAGTCCGCCCGTGATTGTTAAGTTGGTGCAA
GCCCTGCTCAAGTGCCACACCATCGAGGAGTTTAGGGCCTCCAATCAGCG
GTCTGCGGTTCTGGGCAACAAGATCGAGATGGAAATCACCGACCTGGTGG
AGAAGAACTCGTCGCTGCTGCGCCTTGGCTTGCACCTGGAGTTCAACGAC
GCCCGCCACCGAGTGGCCGCTCACCTGCAGCGCAACATCGACAGAATACG
TGTGAAACGCCTGAACCAGCGTAAATAAAAGCTTTCTAGACCAT
BS07805.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tmod-RB | 1212 | CG1539-PB | 1..1212 | 17..1228 | 6060 | 100 | Plus |
tmod-RJ | 1230 | CG1539-PJ | 133..1230 | 131..1228 | 5490 | 100 | Plus |
tmod-RI | 1320 | CG1539-PI | 223..1320 | 131..1228 | 5490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tmod-RB | 2508 | CG1539-RB | 160..1373 | 17..1230 | 6070 | 100 | Plus |
tmod-RJ | 2753 | CG1539-RJ | 519..1618 | 131..1230 | 5500 | 100 | Plus |
tmod-RI | 3000 | CG1539-RI | 766..1865 | 131..1230 | 5500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30572023..30572535 | 284..796 | 2565 | 100 | Plus |
3R | 32079331 | 3R | 30572597..30572850 | 795..1048 | 1270 | 100 | Plus |
3R | 32079331 | 3R | 30571809..30571962 | 131..284 | 770 | 100 | Plus |
3R | 32079331 | 3R | 30572922..30573072 | 1046..1196 | 755 | 100 | Plus |
3R | 32079331 | 3R | 30571316..30571429 | 17..130 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:03:11 has no hits.
BS07805.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:54 Download gff for
BS07805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RB | 1..1212 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:34 Download gff for
BS07805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RB | 150..1373 | 7..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:14 Download gff for
BS07805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RB | 160..1369 | 17..1226 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:54 Download gff for
BS07805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RB | 150..1373 | 7..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:14 Download gff for
BS07805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RB | 160..1369 | 17..1226 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:14 Download gff for
BS07805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30571316..30571429 | 17..130 | 100 | -> | Plus |
3R | 30571809..30571961 | 131..283 | 100 | -> | Plus |
3R | 30572023..30572535 | 284..796 | 100 | -> | Plus |
3R | 30572599..30572850 | 797..1048 | 100 | -> | Plus |
3R | 30572925..30573072 | 1049..1196 | 100 | -> | Plus |
3R | 30577179..30577208 | 1197..1226 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:14 Download gff for
BS07805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26397038..26397151 | 17..130 | 100 | -> | Plus |
arm_3R | 26397531..26397683 | 131..283 | 100 | -> | Plus |
arm_3R | 26397745..26398257 | 284..796 | 100 | -> | Plus |
arm_3R | 26398321..26398572 | 797..1048 | 100 | -> | Plus |
arm_3R | 26398647..26398794 | 1049..1196 | 100 | -> | Plus |
arm_3R | 26402901..26402930 | 1197..1226 | 100 | | Plus |
BS07805.pep Sequence
Translation from 16 to 1227
> BS07805.pep
MESALPVAEFQQIKLRPVPKVKRRAPQPPVSLRLKHKNTSATTKTTTLTT
PAKLYGKDLSEYDDVDVESLLAQLSPEEITILAKEVDPDDNFLPPDQRNS
YECTKEATGPLNRKQLIEHINKQAIETPDQPEFEPFVQGKVRGKKWVPPP
RDARDIEAEEQIAIDMGEEYEHALNDATQEEIIDLAAILGFHSMMNQDQY
HASLLNKGQPVGLGWDGITKSTQQKLFPMDPPNNTDVEESIKRVKDDDSK
LIDLNLNNIKNISDEKLEQLFAALPQNEHLEVLSLTNVGLTDKTALLLAA
AIEKSKTLRVLNVETNFISPPVIVKLVQALLKCHTIEEFRASNQRSAVLG
NKIEMEITDLVEKNSSLLRLGLHLEFNDARHRVAAHLQRNIDRIRVKRLN
QRK*
BS07805.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tmod-PB | 403 | CG1539-PB | 1..403 | 1..403 | 2053 | 100 | Plus |
tmod-PI | 439 | CG1539-PI | 66..439 | 30..403 | 1864 | 98.1 | Plus |
tmod-PL | 439 | CG1539-PL | 66..439 | 30..403 | 1864 | 98.1 | Plus |
tmod-PA | 367 | CG1539-PA | 3..367 | 39..403 | 1860 | 100 | Plus |
tmod-PH | 372 | CG1539-PH | 8..372 | 39..403 | 1860 | 100 | Plus |