Clone BS07807 Report

Search the DGRC for BS07807

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG30344-RA
Protein status:BS07807.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07807.3prime Sequence

956 bp (889 high quality bases) assembled on 2006-01-06

> BS07807.3prime
ATGGTCTAGAAAGCTTTTAGCTGCCAATGGCCTGGTAGACACTGCTACTA
CCCATCGACTTCTGGATGCCGAAGATCACGGCTATCAGAATGTAACACAC
AAAGTAGAGAGCGGCGCTAATAAAGTTGAAAGCTCCGGGATAATTTTCCA
AAGTTGCCTTGTAGACGGTTGTGTACAGAGGTGCAGCGCCCAGTGGCGAA
ACCGATTCCATGGAGGTGGTCAGAGCAAAGATCTTGCCAACTTCAGTCGC
GGGTGCAACGTGCGAGAGAATCGCGCGGCACATAGGTCCCATGACGCCAC
GCATCATACCCAGCGTCATGCCCAGATACAGCTCTTGCCAGTAGACTGCT
GTGGCTCGAACCGTGCTCTCCAGAACACAGCAAGCCAGGGAGAGCATTGC
CATGGTTACGATAGACATCTTTAGAACGCGGCGCAATACCAACATGCCAA
CGATGCTGCCCACAATCTGGATCACGATGCGGGATGCGTTGAATAGACTG
AAGTCCTTAATGGTCCAGTTGAATTTATCCTGCACGAACATGTAATTTAC
AGTGCTCTCTCCCTCCATGTCGAAAATGGCTATCGTAAGGGCAATCATTG
TAAGCCAGATGATTGTGCGATCAAAGTTGGGGCGCCTCTTAAAGCAGGTG
CGAATCAGGTCCGTGACCAAATCGAAACGGAAGAACTCACGGACTCGCGA
TCCGGTGTGAATGTCACCTGGATTTAGGCTTTCAGGTACAAACAGAAGCA
CGTACATCAAGGCAAACATCATCAGGCTACCAGCAATGGAAAACAACACC
AGAGCATTTGTGGCAGCATAGATATAACCGCTGGCCACATTGCCCACCAT
TATGCCAGCACAGAGGGAGGCTTCATTGAGGACCATTCTCAGAGCCTTCT
TTCGCTCCTTGGCCACATCGGATATGTAGCAATAGATTCCAGTAATCAAG
GCGCAA

BS07807.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG30344-PA 1524 CG30344-RA 585..1524 956..17 4700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG30344-RA 2147 CG30344-RA 912..1851 956..17 4700 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9147549..9147877 565..237 1645 100 Minus
2R 25286936 2R 9147113..9147301 889..701 945 100 Minus
2R 25286936 2R 9147938..9148095 238..81 790 100 Minus
2R 25286936 2R 9147363..9147498 700..565 680 100 Minus
2R 25286936 2R 9146978..9147046 956..888 345 100 Minus
2R 25286936 2R 9148153..9148216 80..17 320 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:58:29 has no hits.

BS07807.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:15 Download gff for BS07807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30344-PA 587..1524 17..954 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:29 Download gff for BS07807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30344-PA 587..1524 17..954 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:32:35 Download gff for BS07807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 914..1867 2..954 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:42 Download gff for BS07807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 914..1867 2..954 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:42 Download gff for BS07807.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9146980..9147046 888..954 100 -> Minus
2R 9147115..9147301 701..887 100 -> Minus
2R 9147363..9147498 565..700 100 -> Minus
2R 9147550..9147876 238..564 100 -> Minus
2R 9147939..9148095 81..237 100 -> Minus
2R 9148153..9148232 2..80 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:32:35 Download gff for BS07807.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5034485..5034551 888..954 100 -> Minus
arm_2R 5034620..5034806 701..887 100 -> Minus
arm_2R 5034868..5035003 565..700 100 -> Minus
arm_2R 5035055..5035381 238..564 100 -> Minus
arm_2R 5035444..5035600 81..237 100 -> Minus
arm_2R 5035658..5035737 2..80 93   Minus

BS07807.5prime Sequence

964 bp (903 high quality bases) assembled on 2006-01-06

> BS07807.5prime
GAAGTTATCAGTCGACATGCCTCGCTCTGATACGGAGGCTTTGGTGGCCG
ATGTGGAGACTGGCGAAGATTCGGCACCACGCATACTGGACGCATCATCT
GCGGCCAGCAGTGAGCAGGTGGACCCGCCTCCGGTACCGCCGCCTCATGA
CTACAGCAGCTATCGCTGGTTCATCCTGGAGCCCGCAGTTTTTTTAATCT
TCTTCGCCAGAAATTTAATTGGGGCGGTTTATCAGAACCAAATTCTCTAC
CAAACCTGCATCACCATCGAGAAATTCAATGCCACGCAATGTGAACCGCT
GCTGGGCATTGATCGCGGATCGGACGCGGATAAAGAAGTCGAGGTGATAG
TACAGACGTATTCTGCAAATATTATGATGACAACCTCTCTGCTAGAGAGC
ATTATTCCTGCCTTCGCGAGTCTGTTCCTGGGTCCCTGGTCCGACAAGTT
CGGAAGGCGGCCAATCCTGCTGACAACTTTTACGGGCTACCTCACTGGCG
CACTCATACTGATAGTAATCACTTACATAACGAGGTCCACGAATATAAGT
CCATGGTGGTTCCTCCTTTCCTCGGTTCCTTCCGTCGTAAGCGGCGGAAC
TTGCGCCTTGATTACTGGAATCTATTGCTACATATCCGATGTGGCCAAGG
AGCGAAAGAAGGCTCTGAGAATGGTCCTCAATGAAGCCTCCCTCTGTGCT
GGCATAATGGTGGGCAATGTGGCCAGCGGTTATATCTATGCTGCCACAAA
TGCTCTGGTGTTGTTTTCCATTGCTGGTAGCCTGATGATGTTTGCCTTGA
TGTACGTGCTTCTGTTTGTACCTGAAAGCCTAAATCCAGGTGACATTCAC
ACCGGATCGCGAGTCCGTGAGTTCTTCCGTTTCGATTTGGTCACGGACCT
GATTCGCACCTGCTTTTAGAGGCGCCCCAACTTTGATCGCACAATCATCT
GGCTTACAATGATT

BS07807.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG30344-PA 1524 CG30344-RA 1..948 17..964 4715 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG30344-RA 2147 CG30344-RA 328..1275 17..964 4725 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9145587..9145792 17..222 1030 100 Plus
2R 25286936 2R 9147113..9147301 668..856 945 100 Plus
2R 25286936 2R 9146862..9147046 485..669 925 100 Plus
2R 25286936 2R 9146646..9146797 335..486 760 100 Plus
2R 25286936 2R 9145859..9145973 221..335 575 100 Plus
2R 25286936 2R 9147363..9147470 857..964 525 99.1 Plus
Blast to na_te.dros performed on 2015-02-12 05:03:03 has no hits.

BS07807.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:16 Download gff for BS07807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30344-PA 1..948 17..964 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:30 Download gff for BS07807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30344-PA 1..948 17..964 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:28:12 Download gff for BS07807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 324..1275 9..964 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:13 Download gff for BS07807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 324..1275 9..964 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:13 Download gff for BS07807.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9146863..9147046 486..669 100 -> Plus
2R 9147115..9147301 670..856 100 -> Plus
2R 9147363..9147470 857..964 99   Plus
2R 9145583..9145791 9..221 98 -> Plus
2R 9145860..9145972 222..334 100 -> Plus
2R 9146646..9146796 335..485 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:28:12 Download gff for BS07807.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5033088..5033296 9..221 98 -> Plus
arm_2R 5033365..5033477 222..334 100 -> Plus
arm_2R 5034151..5034301 335..485 100 -> Plus
arm_2R 5034368..5034551 486..669 100 -> Plus
arm_2R 5034620..5034806 670..856 100 -> Plus
arm_2R 5034868..5034975 857..964 99   Plus

BS07807.complete Sequence

1556 bp (1556 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ635994

> BS07807.complete
GAAGTTATCAGTCGACATGCCTCGCTCTGATACGGAGGCTTTGGTGGCCG
ATGTGGAGACTGGCGAAGATTCGGCACCACGCATACTGGACGCATCATCT
GCGGCCAGCAGTGAGCAGGTGGACCCGCCTCCGGTACCGCCGCCTCATGA
CTACAGCAGCTATCGCTGGTTCATCCTGGAGCCCGCAGTTTTTTTAATCT
TCTTCGCCAGAAATTTAATTGGGGCGGTTTATCAGAACCAAATTCTCTAC
CAAACCTGCATCACCATCGAGAAATTCAATGCCACGCAATGTGAACCGCT
GCTGGGCATTGATCGCGGATCGGACGCGGATAAAGAAGTCGAGGTGATAG
TACAGACGTATTCTGCAAATATTATGATGACAACCTCTCTGCTAGAGAGC
ATTATTCCTGCCTTCGCGAGTCTGTTCCTGGGTCCCTGGTCCGACAAGTT
CGGAAGGCGGCCAATCCTGCTGACAACTTTTACGGGCTACCTCACTGGCG
CACTCATACTGATAGTAATCACTTACATAACGAGGTCCACGAATATAAGT
CCATGGTGGTTCCTCCTTTCCTCGGTTCCTTCCGTCGTAAGCGGCGGAAC
TTGCGCCTTGATTACTGGAATCTATTGCTACATATCCGATGTGGCCAAGG
AGCGAAAGAAGGCTCTGAGAATGGTCCTCAATGAAGCCTCCCTCTGTGCT
GGCATAATGGTGGGCAATGTGGCCAGCGGTTATATCTATGCTGCCACAAA
TGCTCTGGTGTTGTTTTCCATTGCTGGTAGCCTGATGATGTTTGCCTTGA
TGTACGTGCTTCTGTTTGTACCTGAAAGCCTAAATCCAGGTGACATTCAC
ACCGGATCGCGAGTCCGTGAGTTCTTCCGTTTCGATTTGGTCACGGACCT
GATTCGCACCTGCTTTAAGAGGCGCCCCAACTTTGATCGCACAATCATCT
GGCTTACAATGATTGCCCTTACGATAGCCATTTTCGACATGGAGGGAGAG
AGCACTGTAAATTACATGTTCGTGCAGGATAAATTCAACTGGACCATTAA
GGACTTCAGTCTATTCAACGCATCCCGCATCGTGATCCAGATTGTGGGCA
GCATCGTTGGCATGTTGGTATTGCGCCGCGTTCTAAAGATGTCTATCGTA
ACCATGGCAATGCTCTCCCTGGCTTGCTGTGTTCTGGAGAGCACGGTTCG
AGCCACAGCAGTCTACTGGCAAGAGCTGTATCTGGGCATGACGCTGGGTA
TGATGCGTGGCGTCATGGGACCTATGTGCCGCGCGATTCTCTCGCACGTT
GCACCCGCGACTGAAGTTGGCAAGATCTTTGCTCTGACCACCTCCATGGA
ATCGGTTTCGCCACTGGGCGCTGCACCTCTGTACACAACCGTCTACAAGG
CAACTTTGGAAAATTATCCCGGAGCTTTCAACTTTATTAGCGCCGCTCTC
TACTTTGTGTGTTACATTCTGATAGCCGTGATCTTCGGCATCCAGAAGTC
GATGGGTAGTAGCAGTGTCTACCAGGCCATTGGCAGCTAAAAGCTTTCTA
GACCAT

BS07807.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG30344-RA 1524 CG30344-PA 1..1524 17..1540 7620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG30344-RA 2147 CG30344-RA 328..1851 17..1540 7620 100 Plus
CG30345-RB 2217 CG30345-RB 466..764 377..675 250 72.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9147549..9147877 992..1320 1645 100 Plus
2R 25286936 2R 9145587..9145792 17..222 1030 100 Plus
2R 25286936 2R 9147113..9147301 668..856 945 100 Plus
2R 25286936 2R 9146862..9147046 485..669 925 100 Plus
2R 25286936 2R 9147938..9148095 1319..1476 790 100 Plus
2R 25286936 2R 9146646..9146797 335..486 760 100 Plus
2R 25286936 2R 9147363..9147498 857..992 680 100 Plus
2R 25286936 2R 9145859..9145973 221..335 575 100 Plus
2R 25286936 2R 9148153..9148216 1477..1540 320 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:31:12 has no hits.

BS07807.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:56 Download gff for BS07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 1..1524 17..1540 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:36 Download gff for BS07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 335..1878 9..1555 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:02 Download gff for BS07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 328..1849 17..1538 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:56 Download gff for BS07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 335..1878 9..1555 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:20 Download gff for BS07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 328..1849 17..1538 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:20 Download gff for BS07807.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9147939..9148095 1320..1476 100 -> Plus
2R 9148153..9148214 1477..1538 100   Plus
2R 9145587..9145791 17..221 100 -> Plus
2R 9145860..9145972 222..334 100 -> Plus
2R 9146646..9146796 335..485 100 -> Plus
2R 9146863..9147046 486..669 100 -> Plus
2R 9147115..9147301 670..856 100 -> Plus
2R 9147363..9147498 857..992 100 -> Plus
2R 9147550..9147876 993..1319 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:02 Download gff for BS07807.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5034868..5035003 857..992 100 -> Plus
arm_2R 5035444..5035600 1320..1476 100 -> Plus
arm_2R 5035658..5035719 1477..1538 100   Plus
arm_2R 5034368..5034551 486..669 100 -> Plus
arm_2R 5034620..5034806 670..856 100 -> Plus
arm_2R 5033092..5033296 17..221 100 -> Plus
arm_2R 5033365..5033477 222..334 100 -> Plus
arm_2R 5034151..5034301 335..485 100 -> Plus
arm_2R 5035055..5035381 993..1319 100 -> Plus

BS07807.pep Sequence

Translation from 16 to 1539

> BS07807.pep
MPRSDTEALVADVETGEDSAPRILDASSAASSEQVDPPPVPPPHDYSSYR
WFILEPAVFLIFFARNLIGAVYQNQILYQTCITIEKFNATQCEPLLGIDR
GSDADKEVEVIVQTYSANIMMTTSLLESIIPAFASLFLGPWSDKFGRRPI
LLTTFTGYLTGALILIVITYITRSTNISPWWFLLSSVPSVVSGGTCALIT
GIYCYISDVAKERKKALRMVLNEASLCAGIMVGNVASGYIYAATNALVLF
SIAGSLMMFALMYVLLFVPESLNPGDIHTGSRVREFFRFDLVTDLIRTCF
KRRPNFDRTIIWLTMIALTIAIFDMEGESTVNYMFVQDKFNWTIKDFSLF
NASRIVIQIVGSIVGMLVLRRVLKMSIVTMAMLSLACCVLESTVRATAVY
WQELYLGMTLGMMRGVMGPMCRAILSHVAPATEVGKIFALTTSMESVSPL
GAAPLYTTVYKATLENYPGAFNFISAALYFVCYILIAVIFGIQKSMGSSS
VYQAIGS*

BS07807.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG30344-PA 507 CG30344-PA 1..507 1..507 2579 100 Plus
CG30345-PB 496 CG30345-PB 1..496 1..507 1638 61.1 Plus
CG15553-PC 521 CG15553-PC 18..509 49..493 808 32.5 Plus
CG8046-PA 519 CG8046-PA 9..504 7..490 699 31.6 Plus
CG8046-PB 388 CG8046-PB 3..373 125..490 584 32.9 Plus