Clone Sequence Records
BS07807.3prime Sequence
956 bp (889 high quality bases) assembled on 2006-01-06
> BS07807.3prime
ATGGTCTAGAAAGCTTTTAGCTGCCAATGGCCTGGTAGACACTGCTACTA
CCCATCGACTTCTGGATGCCGAAGATCACGGCTATCAGAATGTAACACAC
AAAGTAGAGAGCGGCGCTAATAAAGTTGAAAGCTCCGGGATAATTTTCCA
AAGTTGCCTTGTAGACGGTTGTGTACAGAGGTGCAGCGCCCAGTGGCGAA
ACCGATTCCATGGAGGTGGTCAGAGCAAAGATCTTGCCAACTTCAGTCGC
GGGTGCAACGTGCGAGAGAATCGCGCGGCACATAGGTCCCATGACGCCAC
GCATCATACCCAGCGTCATGCCCAGATACAGCTCTTGCCAGTAGACTGCT
GTGGCTCGAACCGTGCTCTCCAGAACACAGCAAGCCAGGGAGAGCATTGC
CATGGTTACGATAGACATCTTTAGAACGCGGCGCAATACCAACATGCCAA
CGATGCTGCCCACAATCTGGATCACGATGCGGGATGCGTTGAATAGACTG
AAGTCCTTAATGGTCCAGTTGAATTTATCCTGCACGAACATGTAATTTAC
AGTGCTCTCTCCCTCCATGTCGAAAATGGCTATCGTAAGGGCAATCATTG
TAAGCCAGATGATTGTGCGATCAAAGTTGGGGCGCCTCTTAAAGCAGGTG
CGAATCAGGTCCGTGACCAAATCGAAACGGAAGAACTCACGGACTCGCGA
TCCGGTGTGAATGTCACCTGGATTTAGGCTTTCAGGTACAAACAGAAGCA
CGTACATCAAGGCAAACATCATCAGGCTACCAGCAATGGAAAACAACACC
AGAGCATTTGTGGCAGCATAGATATAACCGCTGGCCACATTGCCCACCAT
TATGCCAGCACAGAGGGAGGCTTCATTGAGGACCATTCTCAGAGCCTTCT
TTCGCTCCTTGGCCACATCGGATATGTAGCAATAGATTCCAGTAATCAAG
GCGCAA
BS07807.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30344-PA | 1524 | CG30344-RA | 585..1524 | 956..17 | 4700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30344-RA | 2147 | CG30344-RA | 912..1851 | 956..17 | 4700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9147549..9147877 | 565..237 | 1645 | 100 | Minus |
2R | 25286936 | 2R | 9147113..9147301 | 889..701 | 945 | 100 | Minus |
2R | 25286936 | 2R | 9147938..9148095 | 238..81 | 790 | 100 | Minus |
2R | 25286936 | 2R | 9147363..9147498 | 700..565 | 680 | 100 | Minus |
2R | 25286936 | 2R | 9146978..9147046 | 956..888 | 345 | 100 | Minus |
2R | 25286936 | 2R | 9148153..9148216 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:58:29 has no hits.
BS07807.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:15 Download gff for
BS07807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-PA | 587..1524 | 17..954 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:29 Download gff for
BS07807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-PA | 587..1524 | 17..954 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:32:35 Download gff for
BS07807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 914..1867 | 2..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:42 Download gff for
BS07807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 914..1867 | 2..954 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:42 Download gff for
BS07807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9146980..9147046 | 888..954 | 100 | -> | Minus |
2R | 9147115..9147301 | 701..887 | 100 | -> | Minus |
2R | 9147363..9147498 | 565..700 | 100 | -> | Minus |
2R | 9147550..9147876 | 238..564 | 100 | -> | Minus |
2R | 9147939..9148095 | 81..237 | 100 | -> | Minus |
2R | 9148153..9148232 | 2..80 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:32:35 Download gff for
BS07807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5034485..5034551 | 888..954 | 100 | -> | Minus |
arm_2R | 5034620..5034806 | 701..887 | 100 | -> | Minus |
arm_2R | 5034868..5035003 | 565..700 | 100 | -> | Minus |
arm_2R | 5035055..5035381 | 238..564 | 100 | -> | Minus |
arm_2R | 5035444..5035600 | 81..237 | 100 | -> | Minus |
arm_2R | 5035658..5035737 | 2..80 | 93 | | Minus |
BS07807.5prime Sequence
964 bp (903 high quality bases) assembled on 2006-01-06
> BS07807.5prime
GAAGTTATCAGTCGACATGCCTCGCTCTGATACGGAGGCTTTGGTGGCCG
ATGTGGAGACTGGCGAAGATTCGGCACCACGCATACTGGACGCATCATCT
GCGGCCAGCAGTGAGCAGGTGGACCCGCCTCCGGTACCGCCGCCTCATGA
CTACAGCAGCTATCGCTGGTTCATCCTGGAGCCCGCAGTTTTTTTAATCT
TCTTCGCCAGAAATTTAATTGGGGCGGTTTATCAGAACCAAATTCTCTAC
CAAACCTGCATCACCATCGAGAAATTCAATGCCACGCAATGTGAACCGCT
GCTGGGCATTGATCGCGGATCGGACGCGGATAAAGAAGTCGAGGTGATAG
TACAGACGTATTCTGCAAATATTATGATGACAACCTCTCTGCTAGAGAGC
ATTATTCCTGCCTTCGCGAGTCTGTTCCTGGGTCCCTGGTCCGACAAGTT
CGGAAGGCGGCCAATCCTGCTGACAACTTTTACGGGCTACCTCACTGGCG
CACTCATACTGATAGTAATCACTTACATAACGAGGTCCACGAATATAAGT
CCATGGTGGTTCCTCCTTTCCTCGGTTCCTTCCGTCGTAAGCGGCGGAAC
TTGCGCCTTGATTACTGGAATCTATTGCTACATATCCGATGTGGCCAAGG
AGCGAAAGAAGGCTCTGAGAATGGTCCTCAATGAAGCCTCCCTCTGTGCT
GGCATAATGGTGGGCAATGTGGCCAGCGGTTATATCTATGCTGCCACAAA
TGCTCTGGTGTTGTTTTCCATTGCTGGTAGCCTGATGATGTTTGCCTTGA
TGTACGTGCTTCTGTTTGTACCTGAAAGCCTAAATCCAGGTGACATTCAC
ACCGGATCGCGAGTCCGTGAGTTCTTCCGTTTCGATTTGGTCACGGACCT
GATTCGCACCTGCTTTTAGAGGCGCCCCAACTTTGATCGCACAATCATCT
GGCTTACAATGATT
BS07807.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30344-PA | 1524 | CG30344-RA | 1..948 | 17..964 | 4715 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:03:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30344-RA | 2147 | CG30344-RA | 328..1275 | 17..964 | 4725 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:03:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9145587..9145792 | 17..222 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 9147113..9147301 | 668..856 | 945 | 100 | Plus |
2R | 25286936 | 2R | 9146862..9147046 | 485..669 | 925 | 100 | Plus |
2R | 25286936 | 2R | 9146646..9146797 | 335..486 | 760 | 100 | Plus |
2R | 25286936 | 2R | 9145859..9145973 | 221..335 | 575 | 100 | Plus |
2R | 25286936 | 2R | 9147363..9147470 | 857..964 | 525 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:03:03 has no hits.
BS07807.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:16 Download gff for
BS07807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-PA | 1..948 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:30 Download gff for
BS07807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-PA | 1..948 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:28:12 Download gff for
BS07807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 324..1275 | 9..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:13 Download gff for
BS07807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 324..1275 | 9..964 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:13 Download gff for
BS07807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9146863..9147046 | 486..669 | 100 | -> | Plus |
2R | 9147115..9147301 | 670..856 | 100 | -> | Plus |
2R | 9147363..9147470 | 857..964 | 99 | | Plus |
2R | 9145583..9145791 | 9..221 | 98 | -> | Plus |
2R | 9145860..9145972 | 222..334 | 100 | -> | Plus |
2R | 9146646..9146796 | 335..485 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:28:12 Download gff for
BS07807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5033088..5033296 | 9..221 | 98 | -> | Plus |
arm_2R | 5033365..5033477 | 222..334 | 100 | -> | Plus |
arm_2R | 5034151..5034301 | 335..485 | 100 | -> | Plus |
arm_2R | 5034368..5034551 | 486..669 | 100 | -> | Plus |
arm_2R | 5034620..5034806 | 670..856 | 100 | -> | Plus |
arm_2R | 5034868..5034975 | 857..964 | 99 | | Plus |
BS07807.complete Sequence
1556 bp (1556 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ635994
> BS07807.complete
GAAGTTATCAGTCGACATGCCTCGCTCTGATACGGAGGCTTTGGTGGCCG
ATGTGGAGACTGGCGAAGATTCGGCACCACGCATACTGGACGCATCATCT
GCGGCCAGCAGTGAGCAGGTGGACCCGCCTCCGGTACCGCCGCCTCATGA
CTACAGCAGCTATCGCTGGTTCATCCTGGAGCCCGCAGTTTTTTTAATCT
TCTTCGCCAGAAATTTAATTGGGGCGGTTTATCAGAACCAAATTCTCTAC
CAAACCTGCATCACCATCGAGAAATTCAATGCCACGCAATGTGAACCGCT
GCTGGGCATTGATCGCGGATCGGACGCGGATAAAGAAGTCGAGGTGATAG
TACAGACGTATTCTGCAAATATTATGATGACAACCTCTCTGCTAGAGAGC
ATTATTCCTGCCTTCGCGAGTCTGTTCCTGGGTCCCTGGTCCGACAAGTT
CGGAAGGCGGCCAATCCTGCTGACAACTTTTACGGGCTACCTCACTGGCG
CACTCATACTGATAGTAATCACTTACATAACGAGGTCCACGAATATAAGT
CCATGGTGGTTCCTCCTTTCCTCGGTTCCTTCCGTCGTAAGCGGCGGAAC
TTGCGCCTTGATTACTGGAATCTATTGCTACATATCCGATGTGGCCAAGG
AGCGAAAGAAGGCTCTGAGAATGGTCCTCAATGAAGCCTCCCTCTGTGCT
GGCATAATGGTGGGCAATGTGGCCAGCGGTTATATCTATGCTGCCACAAA
TGCTCTGGTGTTGTTTTCCATTGCTGGTAGCCTGATGATGTTTGCCTTGA
TGTACGTGCTTCTGTTTGTACCTGAAAGCCTAAATCCAGGTGACATTCAC
ACCGGATCGCGAGTCCGTGAGTTCTTCCGTTTCGATTTGGTCACGGACCT
GATTCGCACCTGCTTTAAGAGGCGCCCCAACTTTGATCGCACAATCATCT
GGCTTACAATGATTGCCCTTACGATAGCCATTTTCGACATGGAGGGAGAG
AGCACTGTAAATTACATGTTCGTGCAGGATAAATTCAACTGGACCATTAA
GGACTTCAGTCTATTCAACGCATCCCGCATCGTGATCCAGATTGTGGGCA
GCATCGTTGGCATGTTGGTATTGCGCCGCGTTCTAAAGATGTCTATCGTA
ACCATGGCAATGCTCTCCCTGGCTTGCTGTGTTCTGGAGAGCACGGTTCG
AGCCACAGCAGTCTACTGGCAAGAGCTGTATCTGGGCATGACGCTGGGTA
TGATGCGTGGCGTCATGGGACCTATGTGCCGCGCGATTCTCTCGCACGTT
GCACCCGCGACTGAAGTTGGCAAGATCTTTGCTCTGACCACCTCCATGGA
ATCGGTTTCGCCACTGGGCGCTGCACCTCTGTACACAACCGTCTACAAGG
CAACTTTGGAAAATTATCCCGGAGCTTTCAACTTTATTAGCGCCGCTCTC
TACTTTGTGTGTTACATTCTGATAGCCGTGATCTTCGGCATCCAGAAGTC
GATGGGTAGTAGCAGTGTCTACCAGGCCATTGGCAGCTAAAAGCTTTCTA
GACCAT
BS07807.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:31:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30344-RA | 1524 | CG30344-PA | 1..1524 | 17..1540 | 7620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30344-RA | 2147 | CG30344-RA | 328..1851 | 17..1540 | 7620 | 100 | Plus |
CG30345-RB | 2217 | CG30345-RB | 466..764 | 377..675 | 250 | 72.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9147549..9147877 | 992..1320 | 1645 | 100 | Plus |
2R | 25286936 | 2R | 9145587..9145792 | 17..222 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 9147113..9147301 | 668..856 | 945 | 100 | Plus |
2R | 25286936 | 2R | 9146862..9147046 | 485..669 | 925 | 100 | Plus |
2R | 25286936 | 2R | 9147938..9148095 | 1319..1476 | 790 | 100 | Plus |
2R | 25286936 | 2R | 9146646..9146797 | 335..486 | 760 | 100 | Plus |
2R | 25286936 | 2R | 9147363..9147498 | 857..992 | 680 | 100 | Plus |
2R | 25286936 | 2R | 9145859..9145973 | 221..335 | 575 | 100 | Plus |
2R | 25286936 | 2R | 9148153..9148216 | 1477..1540 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:31:12 has no hits.
BS07807.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:56 Download gff for
BS07807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 1..1524 | 17..1540 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:36 Download gff for
BS07807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 335..1878 | 9..1555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:02 Download gff for
BS07807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 328..1849 | 17..1538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:56 Download gff for
BS07807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 335..1878 | 9..1555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:20 Download gff for
BS07807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 328..1849 | 17..1538 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:20 Download gff for
BS07807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9147939..9148095 | 1320..1476 | 100 | -> | Plus |
2R | 9148153..9148214 | 1477..1538 | 100 | | Plus |
2R | 9145587..9145791 | 17..221 | 100 | -> | Plus |
2R | 9145860..9145972 | 222..334 | 100 | -> | Plus |
2R | 9146646..9146796 | 335..485 | 100 | -> | Plus |
2R | 9146863..9147046 | 486..669 | 100 | -> | Plus |
2R | 9147115..9147301 | 670..856 | 100 | -> | Plus |
2R | 9147363..9147498 | 857..992 | 100 | -> | Plus |
2R | 9147550..9147876 | 993..1319 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:02 Download gff for
BS07807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5034868..5035003 | 857..992 | 100 | -> | Plus |
arm_2R | 5035444..5035600 | 1320..1476 | 100 | -> | Plus |
arm_2R | 5035658..5035719 | 1477..1538 | 100 | | Plus |
arm_2R | 5034368..5034551 | 486..669 | 100 | -> | Plus |
arm_2R | 5034620..5034806 | 670..856 | 100 | -> | Plus |
arm_2R | 5033092..5033296 | 17..221 | 100 | -> | Plus |
arm_2R | 5033365..5033477 | 222..334 | 100 | -> | Plus |
arm_2R | 5034151..5034301 | 335..485 | 100 | -> | Plus |
arm_2R | 5035055..5035381 | 993..1319 | 100 | -> | Plus |
BS07807.pep Sequence
Translation from 16 to 1539
> BS07807.pep
MPRSDTEALVADVETGEDSAPRILDASSAASSEQVDPPPVPPPHDYSSYR
WFILEPAVFLIFFARNLIGAVYQNQILYQTCITIEKFNATQCEPLLGIDR
GSDADKEVEVIVQTYSANIMMTTSLLESIIPAFASLFLGPWSDKFGRRPI
LLTTFTGYLTGALILIVITYITRSTNISPWWFLLSSVPSVVSGGTCALIT
GIYCYISDVAKERKKALRMVLNEASLCAGIMVGNVASGYIYAATNALVLF
SIAGSLMMFALMYVLLFVPESLNPGDIHTGSRVREFFRFDLVTDLIRTCF
KRRPNFDRTIIWLTMIALTIAIFDMEGESTVNYMFVQDKFNWTIKDFSLF
NASRIVIQIVGSIVGMLVLRRVLKMSIVTMAMLSLACCVLESTVRATAVY
WQELYLGMTLGMMRGVMGPMCRAILSHVAPATEVGKIFALTTSMESVSPL
GAAPLYTTVYKATLENYPGAFNFISAALYFVCYILIAVIFGIQKSMGSSS
VYQAIGS*
BS07807.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30344-PA | 507 | CG30344-PA | 1..507 | 1..507 | 2579 | 100 | Plus |
CG30345-PB | 496 | CG30345-PB | 1..496 | 1..507 | 1638 | 61.1 | Plus |
CG15553-PC | 521 | CG15553-PC | 18..509 | 49..493 | 808 | 32.5 | Plus |
CG8046-PA | 519 | CG8046-PA | 9..504 | 7..490 | 699 | 31.6 | Plus |
CG8046-PB | 388 | CG8046-PB | 3..373 | 125..490 | 584 | 32.9 | Plus |