Clone BS07808 Report

Search the DGRC for BS07808

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:8
Vector:pDNR-Dual
Associated Gene/Transcriptkat-60L1-RA
Protein status:BS07808.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07808.3prime Sequence

950 bp (830 high quality bases) assembled on 2006-01-06

> BS07808.3prime
ATGGTCTAGAAAGCTTCTAGCACGACCCGTATTCCTCCATCCACTTTTCG
AAGCGGGCAACGTCATCGGCAGAGACGGACTTCTTGGTGCGCAGACGGGC
GTCCTGGAAGTCCTGCAAAGTAATCGGCTGGTCAACCTCCTCGCGTCGGA
TTTGCTTAATCTGATCGGGAGTGCGTCCGGAAATGAGGCGCCGCATGGCC
ATCATGGAGGCGTCCCGGCACACGTTGCTTATGTCCGATCCCGAGTAGCC
CTGCAGTTCGTCGCCGATTATTCCGGTGTTCAGACTGGGCGACAGGCATA
CGTCCTTCAGGCAGAGCTTGAGGAGAGCCGATCGGGTGCCCTCGTTTGGG
AGAGGAATATAGATTCGCTTTTCAAAACGTCTCCGGAAAGCCTCATCGAT
GTCCCACGGGTGATTGGTGGCCGCCAGCACCATGATCACCTTCTCCTCCT
GCATGCTTGCGTTGAGTCCGTCCATTTGGATGAGCAGCTCGGCCTTGAAC
CGCCGACTGGCCTCGTGCTCCGAGTCACTGCCCCTGGAGGCGCATAGGGC
GTCTATCTCGTCGATGAAAATGGTGCTGGGCGCATAAAATCGGGCCATCT
CGAACAGGAGACGCACCAGCTTCTCGCTCTCTCCTCGGTATTTCGAGGTC
AGGGTCGAGGAGGACACGTTGAAGAAGGTGGTTCCACATTCTGTGGCCAC
CGCCTTGGCCAGCATGGTTTTGCCTGTTCCCGGCGGACCGACCATCAACA
CTCCACGCCACGGCCGGCGGATTCCCTTGAAGAACTCCGGCATGATTACC
GGAAGCACCACTGCTTCCTGGAGTATTGTCTTGGCCTCATTGAGCCCAGC
CACATCGGTCCACTTGATGCACGGATGGCGCTGCAGAATGTCCTTCTCCA
GGGTGTCCACCAGATGAACCTCGTAGCCCCAGGGCGAGAAGTGCTTGGCC

BS07808.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1193-PA 1818 CG1193-RA 885..1818 950..17 4645 99.8 Minus
CG1193-PB 2010 CG1193-RB 1077..2010 950..17 4645 99.8 Minus
CG9475-PB 1170 Rpt3R-RB 544..573 724..695 150 100 Minus
CG9475-PA 1266 Rpt3R-RA 640..669 724..695 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-RH 2313 CG1193-RH 1035..1968 950..17 4655 99.9 Minus
kat-60L1-RG 2479 CG1193-RG 1201..2134 950..17 4655 99.9 Minus
kat-60L1-RF 2172 CG1193-RF 1023..1956 950..17 4655 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5786263..5786739 819..343 2385 100 Minus
3R 32079331 3R 5786794..5787120 343..17 1635 100 Minus
3R 32079331 3R 5785935..5786068 950..817 655 99.3 Minus
3R 32079331 3R 5228408..5228838 347..777 565 75.4 Plus
Blast to na_te.dros performed on 2015-02-10 19:02:00 has no hits.

BS07808.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:17 Download gff for BS07808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1193-PB 1077..2010 17..950 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:32 Download gff for BS07808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1193-PB 1077..2010 17..950 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:10:14 Download gff for BS07808.3prime
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RF 1023..1956 17..950 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:57 Download gff for BS07808.3prime
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RF 1023..1956 17..950 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:57 Download gff for BS07808.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5786795..5787120 17..342 100   Minus
3R 5785935..5786067 818..950 99 -> Minus
3R 5786265..5786739 343..817 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:10:14 Download gff for BS07808.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1611657..1611789 818..950 99 -> Minus
arm_3R 1611987..1612461 343..817 100 -> Minus
arm_3R 1612517..1612842 17..342 100   Minus

BS07808.5prime Sequence

893 bp (819 high quality bases) assembled on 2006-01-06

> BS07808.5prime
GAAGTTATCAGTCGACATGCGGGTCGAGGAGGCGACCTATAGGCGCACCA
CGCGCGAGAAGATTGTGCTGCGAGGGAACACCACCATACGCACCGTGGAC
TCCACTTCCACATACCTGCCCGTGATGAGTCCTGCGGGCTCTTCCACACC
TCCGACAAGCCTGTCGCACATGGCCCGGATGATGGACTCCCTGATCCTCG
ACTCGCTATCCCCATTTGGCTTCACGAAGATCACGGCCACCAGTCGACCT
TCCCGGAACGCCAGCTTGAAGAAGAGCTCGGAAGGCGGCCACTCCTCGAC
AGCAGAGCGCCACCGGCCCGTCAACAACCTGGGCTCTAATGCACCTGGGG
GATTGGGCATTGGCGGAAGTGTTCCGTTGCGCAGCAAGCAGCGGCTACCC
ACGCAAGAAGTGGCACCACAACCGCGAGCCAGTCAGACGGCCCAAATGCC
ATTTCCGTCGCAGCAGCAGGATAATCGGTGGGTGTCCTCCCTGCGTCGGC
GGGATCCCGAGCTGCAGCCCACTTTACCCTCCATCAACAGCAATGCGAAC
AGCAGCAGCCTCAGCCAGAGCCACCACGGAAGTGCTGGGAACGTGGGATT
GGCGGGCGCAGGAGCACCTACACCCGCCGCCAGCATGGGCACAATGCGCC
TGGGGCGACCAGCAAGGGCATCCGCCATGACCGCCGCCTTGCGGAAGAGC
CGATCCGTGGAGCGCCTGCGGGCCAGGAAGCTCAGCACAAACACCCAGCT
TAACTTGAAGCACAAGCCGGTTAAGAAGAACTCGCTGGACGAAAACTCCA
ACTCGGATGACCAAGACGCCACCACATCCCTGGAAGACAACTCGCACGCC
CAGTCCCTAGCCACCAGCCACAACACGCCCAAATGCTCACCGA

BS07808.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1193-PA 1818 CG1193-RA 1..877 17..893 4385 100 Plus
CG1193-PB 2010 CG1193-RB 314..1069 138..893 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-RF 2172 CG1193-RF 139..1015 17..893 4385 100 Plus
kat-60L1-RA 2301 CG1193-RA 139..1015 17..893 4385 100 Plus
kat-60L1-RH 2313 CG1193-RH 139..1027 17..893 4255 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5785440..5785927 406..893 2440 100 Plus
3R 32079331 3R 5785112..5785381 138..407 1350 100 Plus
3R 32079331 3R 5781900..5782021 17..138 610 100 Plus
Blast to na_te.dros performed 2015-02-02 10:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3243..3321 497..577 120 64.2 Plus

BS07808.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:18 Download gff for BS07808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1193-PA 1..876 17..892 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:33 Download gff for BS07808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1193-PA 1..876 17..892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:34:46 Download gff for BS07808.5prime
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RA 133..1014 10..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:43:28 Download gff for BS07808.5prime
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RA 133..1014 10..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:43:28 Download gff for BS07808.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5781894..5782021 10..138 97 -> Plus
3R 5785113..5785381 139..407 100 -> Plus
3R 5785442..5785926 408..892 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:34:46 Download gff for BS07808.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1607616..1607743 10..138 97 -> Plus
arm_3R 1610835..1611103 139..407 100 -> Plus
arm_3R 1611164..1611648 408..892 100   Plus

BS07808.complete Sequence

1850 bp assembled on 2008-01-03

GenBank Submission: FJ635995

> BS07808.complete
GAAGTTATCAGTCGACATGCGGGTCGAGGAGGCGACCTATAGGCGCACCA
CGCGCGAGAAGATTGTGCTGCGAGGGAACACCACCATACGCACCGTGGAC
TCCACTTCCACATACCTGCCCGTGATGAGTCCTGCGGGCTCTTCCACACC
TCCGACAAGCCTGTCGCACATGGCCCGGATGATGGACTCCCTGATCCTCG
ACTCGCTATCCCCATTTGGCTTCACGAAGATCACGGCCACCAGTCGACCT
TCCCGGAACGCCAGCTTGAAGAAGAGCTCGGAAGGCGGCCACTCCTCGAC
AGCAGAGCGCCACCGGCCCGTCAACAACCTGGGCTCTAATGCACCTGGGG
GATTGGGCATTGGCGGAAGTGTTCCGTTGCGCAGCAAGCAGCGGCTACCC
ACGCAAGAAGTGGCACCACAACCGCGAGCCAGTCAGACGGCCCAAATGCC
ATTTCCGTCGCAGCAGCAGGATAATCGGTGGGTGTCCTCCCTGCGTCGGC
GGGATCCCGAGCTGCAGCCCACTTTACCCTCCATCAACAGCAATGCGAAC
AGCAGCAGCCTCAGCCAGAGCCACCACGGAAGTGCTGGGAACGTGGGATT
GGCGGGCGCAGGAGCACCTACACCCGCCGCCAGCATGGGCACAATGCGCC
TGGGGCGACCAGCAAGGGCATCCGCCATGACCGCCGCCTTGCGGAAGAGC
CGATCCGTGGAGCGCCTGCGGGCCAGGAAGCTCAGCACAAACACCCAGCT
TAACTTGAAGCACAAGCCGGTTAAGAAGAACTCGCTGGACGAAAACTCCA
ACTCGGATGACCAAGACGCCACCACATCCCTGGAAGACAACTCGCACGCC
CAGTCCCTAGCCACCAGCCACAACACGCCCAAATGCTCACCGAAGACCAA
GGCCAAGCACTTCTCGCCCTTGGGCTACGAGGTTCATCTGGTGGACACCC
TGGAGAAGGACATTCTGCAGCGCCATCCGTGCATCAAGTGGACCGATGTG
GCTGGGCTCAATGAGGCCAAGACAATACTCCAGGAAGCAGTGGTGCTTCC
GGTAATCATGCCGGAGTTCTTCAAGGGAATCCGCCGGCCGTGGCGTGGAG
TGTTGATGGTCGGTCCGCCGGGAACAGGCAAAACCATGCTGGCCAAGGCG
GTGGCCACAGAATGTGGAACCACCTTCTTCAACGTGTCCTCCTCGACCCT
GACCTCGAAATACCGAGGAGAGAGCGAGAAGCTGGTGCGTCTCCTGTTCG
AGATGGCCCGATTTTATGCGCCCAGCACCATTTTCATCGACGAGATAGAC
GCCCTATGCGCCTCCAGGGGCAGTGACTCGGAGCACGAGGCCAGTCGGCG
GTTCAAGGCCGAGCTGCTCATCCAAATGGACGGACTCAACGCAAGCATGC
AGGAGGAGAAGGTGATCATGGTGCTGGCGGCCACCAATCACCCGTGGGAC
ATCGATGAGGCTTTCCGGAGACGTTTTGAAAAGCGAATCTATATTCCTCT
CCCAAACGAGGGCACCCGATCGGCTCTCCTCAAGCTCTGCCTGAAGGACG
TATGCCTGTCGCCCAGTCTGAACACCGGAATAATCGGCGACGAACTGCAG
GGCTACTCGGGATCGGACATAAGCAACGTGTGCCGGGACGCCTCCATGAT
GGCCATGCGGCGCCTCATTTCCGGACGCACTCCCGATCAGATTAAGCAAA
TCCGACGCGAGGAGGTTGACCAGCCGATTACTTTGCAGGACTTCCAGGAC
GCCCGTCTGCGCACCAAGAAGTCCGTCTCTGCCGATGACGTTGCCCGCTT
CGAAAAGTGGATGGAGGAATACGGGTCGTGCTAGAAGCTTTCTAGACCAT

BS07808.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-RF 1818 CG1193-PF 1..1818 17..1834 9090 100 Plus
kat-60L1-RA 1818 CG1193-PA 1..1818 17..1834 9090 100 Plus
kat-60L1-RH 1830 CG1193-PH 1..1830 17..1834 8935 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-RF 2172 CG1193-RF 139..1956 17..1834 9090 100 Plus
kat-60L1-RA 2301 CG1193-RA 139..1956 17..1834 9090 100 Plus
kat-60L1-RH 2313 CG1193-RH 139..1968 17..1834 8935 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5785440..5786068 406..1034 3145 100 Plus
3R 32079331 3R 5786263..5786739 1032..1508 2385 100 Plus
3R 32079331 3R 5786794..5787120 1508..1834 1635 100 Plus
3R 32079331 3R 5785112..5785381 138..407 1350 100 Plus
3R 32079331 3R 5781900..5782021 17..138 610 100 Plus
3R 32079331 3R 5228408..5228838 1504..1074 565 75.4 Minus
Blast to na_te.dros performed 2014-11-27 10:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3243..3321 497..577 120 64.2 Plus

BS07808.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:12 Download gff for BS07808.complete
Subject Subject Range Query Range Percent Splice Strand
CG1193-RA 1..1818 17..1834 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:00 Download gff for BS07808.complete
Subject Subject Range Query Range Percent Splice Strand
CG1193-RA 139..1956 17..1834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:09 Download gff for BS07808.complete
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RA 139..1956 17..1834 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:12 Download gff for BS07808.complete
Subject Subject Range Query Range Percent Splice Strand
CG1193-RA 133..1956 10..1834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:31 Download gff for BS07808.complete
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RA 139..1956 17..1834 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:31 Download gff for BS07808.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5785113..5785381 139..407 100 -> Plus
3R 5781900..5782021 17..138 100 -> Plus
3R 5785442..5786067 408..1033 100 -> Plus
3R 5786265..5786739 1034..1508 100 -> Plus
3R 5786795..5787120 1509..1834 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:09 Download gff for BS07808.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1607622..1607743 17..138 100 -> Plus
arm_3R 1610835..1611103 139..407 100 -> Plus
arm_3R 1611164..1611789 408..1033 100 -> Plus
arm_3R 1611987..1612461 1034..1508 100 -> Plus
arm_3R 1612517..1612842 1509..1834 100   Plus

BS07808.pep Sequence

Translation from 16 to 1833

> BS07808.pep
MRVEEATYRRTTREKIVLRGNTTIRTVDSTSTYLPVMSPAGSSTPPTSLS
HMARMMDSLILDSLSPFGFTKITATSRPSRNASLKKSSEGGHSSTAERHR
PVNNLGSNAPGGLGIGGSVPLRSKQRLPTQEVAPQPRASQTAQMPFPSQQ
QDNRWVSSLRRRDPELQPTLPSINSNANSSSLSQSHHGSAGNVGLAGAGA
PTPAASMGTMRLGRPARASAMTAALRKSRSVERLRARKLSTNTQLNLKHK
PVKKNSLDENSNSDDQDATTSLEDNSHAQSLATSHNTPKCSPKTKAKHFS
PLGYEVHLVDTLEKDILQRHPCIKWTDVAGLNEAKTILQEAVVLPVIMPE
FFKGIRRPWRGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYR
GESEKLVRLLFEMARFYAPSTIFIDEIDALCASRGSDSEHEASRRFKAEL
LIQMDGLNASMQEEKVIMVLAATNHPWDIDEAFRRRFEKRIYIPLPNEGT
RSALLKLCLKDVCLSPSLNTGIIGDELQGYSGSDISNVCRDASMMAMRRL
ISGRTPDQIKQIRREEVDQPITLQDFQDARLRTKKSVSADDVARFEKWME
EYGSC*

BS07808.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-PF 605 CG1193-PF 1..605 1..605 3095 100 Plus
kat-60L1-PA 605 CG1193-PA 1..605 1..605 3095 100 Plus
kat-60L1-PH 609 CG1193-PH 1..609 1..605 3080 99.3 Plus
kat-60L1-PD 609 CG1193-PD 1..609 1..605 3080 99.3 Plus
kat-60L1-PC 669 CG1193-PC 106..669 42..605 2891 100 Plus