Clone BS07809 Report

Search the DGRC for BS07809

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:9
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS07809.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS07809.3prime Sequence

609 bp (608 high quality bases) assembled on 2006-01-06

> BS07809.3prime
ATGGTCTAGAAAGCTTTCACCCCTCGGGAACAACGGGCTGCAAATTGAAA
ATACCAAGGCGTAAAAAACAGGACAACAAAATGGGGAACCTGGAGACAAG
GAACAAACGGAATGCAAATGACGCAAAAATGGAAATGGATGGAAATTGAA
AACCTGAGGGCAACGTGTCAAGGGGGGCGGGGGCAAAATGAAAAATAATT
AGCGCAATTAATGACCACGTAATTAGCGCTTCGAATCTATCCTTCTCTGT
GCGCTCTACATCTTGCCATCCCTTTCTCCCACAATGTGTGCAGTGGCACG
TAAAGTGTAACCCACACCCACCATTTTCCGCCCACTTTCCCCGCGGAATT
CGCAGCAAGTCCCCCCGCACCATCGCCTTCATTAATAGTTCGCTGTGGCT
ACGTTTGATAACTCTATCGCGGTCCGGTTGCCACTGATTTTCCTTTTTCC
CACTTTTCCGACTTTTCCATTTGCCAACAGAGTGCCAGCGCAAAAGCGAG
AGAGATTGTGAGCAGGAGTGAGGCAGAGGAGCAGGAGAAAAGTGGAGAGC
AGATCCCAACGACACGCTAATGAATGCACGATGGCCCCGTTTCATGTCGA
CTGATAACT

BS07809.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32509-PA 579 CG32509-RA 1..579 595..17 2895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-01-30 14:27:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20893792..20894372 15..595 2905 100 Plus
Blast to na_te.dros performed on 2015-01-30 14:27:00 has no hits.

BS07809.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:19 Download gff for BS07809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32509-PA 1..579 17..595 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:35 Download gff for BS07809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32509-PA 1..579 17..595 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:34:43 Download gff for BS07809.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20893792..20894372 15..595 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:34:43 Download gff for BS07809.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20893792..20894372 15..595 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:03:18 Download gff for BS07809.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20764819..20765399 15..595 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:03:18 Download gff for BS07809.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20764819..20765399 15..595 100   Plus

BS07809.5prime Sequence

609 bp (608 high quality bases) assembled on 2006-01-06

> BS07809.5prime
GAAGTTATCAGTCGACATGAAACGGGGCCATCGTGCATTCATTAGCGTGT
CGTTGGGATCTGCTCTCCACTTTTCTCCTGCTCCTCTGCCTCACTCCTGC
TCACAATCTCTCTCGCTTTTGCGCTGGCACTCTGTTGGCAAATGGAAAAG
TCGGAAAAGTGGGAAAAAGGAAAATCAGTGGCAACCGGACCGCGATAGAG
TTATCAAACGTAGCCACAGCGAACTATTAATGAAGGCGATGGTGCGGGGG
GACTTGCTGCGAATTCCGCGGGGAAAGTGGGCGGAAAATGGTGGGTGTGG
GTTACACTTTACGTGCCACTGCACACATTGTGGGAGAAAGGGATGGCAAG
ATGTAGAGCGCACAGAGAAGGATAGATTCGAAGCGCTAATTACGTGGTCA
TTAATTGCGCTAATTATTTTTCATTTTGCCCCCGCCCCCCTTGACACGTT
GCCCTCAGGTTTTCAATTTCCATCCATTTCCATTTTTGCGTCATTTGCAT
TCCGTTTGTTCCTTGTCTCCAGGTTCCCCATTTTGTTGTCCTGTTTTTTA
CGCCTTGGTATTTTCAATTTGCAGCCCGTTGTTCCCGAGGGGTGAAAGCT
TTCTAGACC

BS07809.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32509-PA 579 CG32509-RA 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 04:59:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20893792..20894372 597..17 2905 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:59:56 has no hits.

BS07809.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:20 Download gff for BS07809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32509-PA 1..579 17..595 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:36 Download gff for BS07809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32509-PA 1..579 17..595 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:52 Download gff for BS07809.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20893792..20894372 17..597 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:52 Download gff for BS07809.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20893792..20894372 17..597 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:27:36 Download gff for BS07809.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20764819..20765399 17..597 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:27:36 Download gff for BS07809.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20764819..20765399 17..597 100   Minus

BS07809.complete Sequence

611 bp (611 high quality bases) assembled on 2006-01-10

> BS07809.complete
GAAGTTATCAGTCGACATGAAACGGGGCCATCGTGCATTCATTAGCGTGT
CGTTGGGATCTGCTCTCCACTTTTCTCCTGCTCCTCTGCCTCACTCCTGC
TCACAATCTCTCTCGCTTTTGCGCTGGCACTCTGTTGGCAAATGGAAAAG
TCGGAAAAGTGGGAAAAAGGAAAATCAGTGGCAACCGGACCGCGATAGAG
TTATCAAACGTAGCCACAGCGAACTATTAATGAAGGCGATGGTGCGGGGG
GACTTGCTGCGAATTCCGCGGGGAAAGTGGGCGGAAAATGGTGGGTGTGG
GTTACACTTTACGTGCCACTGCACACATTGTGGGAGAAAGGGATGGCAAG
ATGTAGAGCGCACAGAGAAGGATAGATTCGAAGCGCTAATTACGTGGTCA
TTAATTGCGCTAATTATTTTTCATTTTGCCCCCGCCCCCCTTGACACGTT
GCCCTCAGGTTTTCAATTTCCATCCATTTCCATTTTTGCGTCATTTGCAT
TCCGTTTGTTCCTTGTCTCCAGGTTCCCCATTTTGTTGTCCTGTTTTTTA
CGCCTTGGTATTTTCAATTTGCAGCCCGTTGTTCCCGAGGGGTGAAAGCT
TTCTAGACCAT

BS07809.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 14:57:49 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 14:57:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20893792..20894372 597..17 2905 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:57:49 has no hits.

BS07809.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-22 00:48:47 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-22 00:48:47 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:50 Download gff for BS07809.complete
Subject Subject Range Query Range Percent Splice Strand
X 20893795..20894372 17..594 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:50 Download gff for BS07809.complete
Subject Subject Range Query Range Percent Splice Strand
X 20893795..20894372 17..594 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:22 Download gff for BS07809.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20764822..20765399 17..594 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:22 Download gff for BS07809.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20764822..20765399 17..594 100   Minus

BS07809.pep Sequence

Translation from 16 to 594

> BS07809.pep
MKRGHRAFISVSLGSALHFSPAPLPHSCSQSLSLLRWHSVGKWKSRKSGK
KENQWQPDRDRVIKRSHSELLMKAMVRGDLLRIPRGKWAENGGCGLHFTC
HCTHCGRKGWQDVERTEKDRFEALITWSLIALIIFHFAPAPLDTLPSGFQ
FPSISIFASFAFRLFLVSRFPILLSCFLRLGIFNLQPVVPEG*
Sequence BS07809.pep has no blast hits.