Clone Sequence Records
BS07810.3prime Sequence
932 bp (729 high quality bases) assembled on 2006-01-06
> BS07810.3prime
ATGGTCTAGAAAGCTTCTATTCGCTTTTTTTGTGTGTAATGACAGCATCC
TCAATCTCCTCCTTGGGCTGGTCCACATCGCCCCATCCCCACGTGGCGTG
AGTGCCGTCACCGGTACGCTTCACACGCTTCTTTATGATATCCGTGGACA
CCGTCTTGAGGTCGTAGGCCCAGCCGATCTTGGCGAAGAAATCGATGAAG
GCGGTAGTGAAGTTTAGCGAGTATTTGCCAAACTCGGCCGTCTTGTAGTC
CCAGGGGAAGACGTGATGGTAGTTATGCCATCCCTCTCCAAAGGCCAAGA
TAGCCACGGAGATGTTCTCCGAAGGATTGATAAATTTGTCGTAGGGACGG
CCACCGAACTTGTGGGCAGCACTGTTCACCAGCCAGGTTACGTTCAGAAT
GAAACACCAGCGGAACATGGTGGCCACAAACCAGGCGTTCATGAAGGATT
CACCCCAGGCGTACATGGGCACCACGGTCGGGATGATGAAGCAAGCAATC
GGCATCAAAATCATGTAGTATTTCTTCTGGAACATGAGGATTGGATCGGC
GCGCAGATCGGATAGATCGACTCCCTTGCCCTTGGCTTTCACCTCCGGGT
GCTTCTTGCACAGCAGCCAGCCGACGTGCGAGAAGAAGAAACCACGCGTG
GCGTTGTGGGGATCGGCGTCAGTCTCCGAGTATTTGTGGTGGACGCGATG
GTCGCGAGCCCAATGGTAGGCGGCATCCTGGAAGGCAATCGTGTTGAAGA
TGACCAGAATCACTCGCAGGGGCCACTTGGCCTTGTAGGAGCGATGCGCC
CACAGACGATGGGCACCGGCGGTAATGCCTAGGCCAGAAATGACGTATAG
AAAATAAGCTAAGATGCACGTCTGCCACTTGGCAGAGGTGACCATGAGGT
AGGCTCCGTAGAGGGCAGCCAGATGGAGGTAA
BS07810.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5887-PA | 1152 | desat1-RA | 237..1152 | 932..17 | 4580 | 100 | Minus |
CG5887-PC | 1152 | desat1-RC | 237..1152 | 932..17 | 4580 | 100 | Minus |
CG5887-PE | 1152 | desat1-RE | 237..1152 | 932..17 | 4580 | 100 | Minus |
CG5887-PB | 1152 | desat1-RB | 237..1152 | 932..17 | 4580 | 100 | Minus |
CG5887-PD | 1152 | desat1-RD | 237..1152 | 932..17 | 4580 | 100 | Minus |
CG5925-PA | 1086 | desat2-RA | 349..458 | 757..648 | 300 | 90.9 | Minus |
CG5925-PA | 1086 | desat2-RA | 286..341 | 820..765 | 230 | 96.4 | Minus |
CG9743-PA | 1263 | CG9743-RA | 970..1034 | 289..225 | 200 | 92.3 | Minus |
CG5925-PA | 1086 | desat2-RA | 904..957 | 202..149 | 195 | 94.4 | Minus |
CG8630-PA | 1227 | CG8630-RA | 859..903 | 286..242 | 150 | 93.3 | Minus |
CG9747-PA | 1386 | CG9747-RA | 997..1040 | 286..243 | 145 | 93.1 | Minus |
CG9743-PA | 1263 | CG9743-RA | 579..645 | 680..614 | 135 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desat1-RD | 1934 | CG5887-RD | 344..1259 | 932..17 | 4580 | 100 | Minus |
Desat1-RB | 1978 | CG5887-RB | 388..1303 | 932..17 | 4580 | 100 | Minus |
Desat1-RE | 1956 | CG5887-RE | 366..1281 | 932..17 | 4580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12445976..12446314 | 860..522 | 1695 | 100 | Minus |
3R | 32079331 | 3R | 12446623..12446941 | 335..17 | 1595 | 100 | Minus |
3R | 32079331 | 3R | 12446376..12446561 | 521..336 | 930 | 100 | Minus |
3R | 32079331 | 3R | 12436763..12437064 | 829..528 | 865 | 85.8 | Minus |
3R | 32079331 | 3R | 12437485..12437630 | 294..149 | 370 | 83.6 | Minus |
3R | 32079331 | 3R | 12445045..12445118 | 932..859 | 370 | 100 | Minus |
3L | 28110227 | 3L | 11023798..11024158 | 822..462 | 350 | 73.1 | Minus |
3R | 32079331 | 3R | 30196888..30197003 | 182..297 | 310 | 84.5 | Plus |
3R | 32079331 | 3R | 30186709..30186806 | 615..712 | 250 | 83.7 | Plus |
3R | 32079331 | 3R | 13282904..13283032 | 703..575 | 225 | 78.3 | Minus |
3R | 32079331 | 3R | 30197375..30197449 | 614..688 | 225 | 86.7 | Plus |
3R | 32079331 | 3R | 30186150..30186266 | 203..319 | 210 | 78.6 | Plus |
3R | 32079331 | 3R | 12437277..12437356 | 433..354 | 205 | 83.8 | Minus |
3R | 32079331 | 3R | 13283528..13283640 | 286..174 | 205 | 78.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:37:32 has no hits.
BS07810.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:21 Download gff for
BS07810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5887-PB | 239..1152 | 17..930 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:38 Download gff for
BS07810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5887-PC | 239..1152 | 17..930 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:40:09 Download gff for
BS07810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat1-RE | 366..1283 | 13..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:27 Download gff for
BS07810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desat1-RE | 366..1283 | 13..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:27 Download gff for
BS07810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12446623..12446943 | 13..335 | 99 | | Minus |
3R | 12445045..12445118 | 859..932 | 100 | -> | Minus |
3R | 12445978..12446314 | 522..858 | 100 | -> | Minus |
3R | 12446376..12446561 | 336..521 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:40:09 Download gff for
BS07810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8270767..8270840 | 859..932 | 100 | -> | Minus |
arm_3R | 8271700..8272036 | 522..858 | 100 | -> | Minus |
arm_3R | 8272098..8272283 | 336..521 | 100 | -> | Minus |
arm_3R | 8272345..8272665 | 13..335 | 99 | | Minus |
BS07810.5prime Sequence
831 bp (828 high quality bases) assembled on 2006-01-06
> BS07810.5prime
GAAGTTATCAGTCGACATGCCGCCCAACGCCCAAGCCGGTGCCCAGTCCA
TCTCAGACTCACTGATCGCAGCAGCTAGTGCCGCCGCCGACGCGGGTCAG
AGCCCCACCAAGCTGCAGGAGGACTCCACCGGAGTGCTCTTCGAGTGCGA
TGTGGAAACCACCGACGGTGGTCTTGTCAAGGACATCACCGTGATGAAGA
AGGCCGAGAAGCGCCGCCTGAAGCTCGTCTGGCGCAACATCATCGCCTTC
GGTTACCTCCATCTGGCTGCCCTCTACGGAGCCTACCTCATGGTCACCTC
TGCCAAGTGGCAGACGTGCATCTTAGCTTATTTTCTATACGTCATTTCTG
GCCTAGGCATTACCGCCGGTGCCCATCGTCTGTGGGCGCATCGCTCCTAC
AAGGCCAAGTGGCCCCTGCGAGTGATTCTGGTCATCTTCAACACGATTGC
CTTCCAGGATGCCGCCTACCATTGGGCTCGCGACCATCGCGTCCACCACA
AATACTCGGAGACTGACGCCGATCCCCACAACGCCACGCGTGGTTTCTTC
TTCTCGCACGTCGGCTGGCTGCTGTGCAAGAAGCACCCGGAGGTGAAAGC
CAAGGGCAAGGGAGTCGATCTATCCGATCTGCGCGCCGATCCAATCCTCA
TGTTCCAGAAGAAATACTACATGATTTTGATGCCGATTGCTTGCTTCATC
ATCCCGACCGTGGTGCCCATGTACGCCTGGGGTGAATCCTTCATGAACGC
CTGGTTTGTGGCCACCATGTTCCGCTGGTGTTTCATTCTGAACGTAACCT
GGCTGGTGAACAGTGCTGCCCACAAGTTCGG
BS07810.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5887-PA | 1152 | desat1-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
CG5887-PC | 1152 | desat1-RC | 1..815 | 17..831 | 4075 | 100 | Plus |
CG5887-PE | 1152 | desat1-RE | 1..815 | 17..831 | 4075 | 100 | Plus |
CG5887-PB | 1152 | desat1-RB | 1..815 | 17..831 | 4075 | 100 | Plus |
CG5887-PD | 1152 | desat1-RD | 1..815 | 17..831 | 4075 | 100 | Plus |
CG5925-PA | 1086 | desat2-RA | 349..458 | 428..537 | 300 | 90.9 | Plus |
CG5925-PA | 1086 | desat2-RA | 286..341 | 365..420 | 230 | 96.4 | Plus |
CG9743-PA | 1263 | CG9743-RA | 579..645 | 505..571 | 135 | 88 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desat1-RD | 1934 | CG5887-RD | 106..922 | 15..831 | 4085 | 100 | Plus |
Desat1-RB | 1978 | CG5887-RB | 150..966 | 15..831 | 4085 | 100 | Plus |
Desat1-RE | 1956 | CG5887-RE | 128..944 | 15..831 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12445976..12446314 | 325..663 | 1695 | 100 | Plus |
3R | 32079331 | 3R | 12444807..12445118 | 15..326 | 1560 | 100 | Plus |
3R | 32079331 | 3R | 12436763..12437064 | 356..657 | 865 | 85.8 | Plus |
3R | 32079331 | 3R | 12446376..12446543 | 664..831 | 840 | 100 | Plus |
3L | 28110227 | 3L | 11023798..11024158 | 363..723 | 350 | 73.1 | Plus |
3R | 32079331 | 3R | 30186709..30186806 | 570..473 | 250 | 83.7 | Minus |
3R | 32079331 | 3R | 13282904..13283032 | 482..610 | 225 | 78.3 | Plus |
3R | 32079331 | 3R | 30197375..30197449 | 571..497 | 225 | 86.7 | Minus |
3R | 32079331 | 3R | 12437277..12437356 | 752..831 | 205 | 83.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:38:06 has no hits.
BS07810.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:22 Download gff for
BS07810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5887-PB | 1..815 | 17..831 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:39 Download gff for
BS07810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5887-PC | 1..815 | 17..831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:02:17 Download gff for
BS07810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat1-RE | 123..944 | 7..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:19 Download gff for
BS07810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desat1-RE | 123..944 | 7..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:19 Download gff for
BS07810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12446376..12446543 | 664..831 | 100 | | Plus |
3R | 12444802..12445118 | 7..326 | 98 | -> | Plus |
3R | 12445978..12446314 | 327..663 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:02:17 Download gff for
BS07810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8270524..8270840 | 7..326 | 98 | -> | Plus |
arm_3R | 8271700..8272036 | 327..663 | 100 | -> | Plus |
arm_3R | 8272098..8272265 | 664..831 | 100 | | Plus |
BS07810.complete Sequence
1184 bp (1184 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ635996
> BS07810.complete
GAAGTTATCAGTCGACATGCCGCCCAACGCCCAAGCCGGTGCCCAGTCCA
TCTCAGACTCACTGATCGCAGCAGCTAGTGCCGCCGCCGACGCGGGTCAG
AGCCCCACCAAGCTGCAGGAGGACTCCACCGGAGTGCTCTTCGAGTGCGA
TGTGGAAACCACCGACGGTGGTCTTGTCAAGGACATCACCGTGATGAAGA
AGGCCGAGAAGCGCCGCCTGAAGCTCGTCTGGCGCAACATCATCGCCTTC
GGTTACCTCCATCTGGCTGCCCTCTACGGAGCCTACCTCATGGTCACCTC
TGCCAAGTGGCAGACGTGCATCTTAGCTTATTTTCTATACGTCATTTCTG
GCCTAGGCATTACCGCCGGTGCCCATCGTCTGTGGGCGCATCGCTCCTAC
AAGGCCAAGTGGCCCCTGCGAGTGATTCTGGTCATCTTCAACACGATTGC
CTTCCAGGATGCCGCCTACCATTGGGCTCGCGACCATCGCGTCCACCACA
AATACTCGGAGACTGACGCCGATCCCCACAACGCCACGCGTGGTTTCTTC
TTCTCGCACGTCGGCTGGCTGCTGTGCAAGAAGCACCCGGAGGTGAAAGC
CAAGGGCAAGGGAGTCGATCTATCCGATCTGCGCGCCGATCCAATCCTCA
TGTTCCAGAAGAAATACTACATGATTTTGATGCCGATTGCTTGCTTCATC
ATCCCGACCGTGGTGCCCATGTACGCCTGGGGTGAATCCTTCATGAACGC
CTGGTTTGTGGCCACCATGTTCCGCTGGTGTTTCATTCTGAACGTAACCT
GGCTGGTGAACAGTGCTGCCCACAAGTTCGGTGGCCGTCCCTACGACAAA
TTTATCAATCCTTCGGAGAACATCTCCGTGGCTATCTTGGCCTTTGGAGA
GGGATGGCATAACTACCATCACGTCTTCCCCTGGGACTACAAGACGGCCG
AGTTTGGCAAATACTCGCTAAACTTCACTACCGCCTTCATCGATTTCTTC
GCCAAGATCGGCTGGGCCTACGACCTCAAGACGGTGTCCACGGATATCAT
AAAGAAGCGTGTGAAGCGTACCGGTGACGGCACTCACGCCACGTGGGGAT
GGGGCGATGTGGACCAGCCCAAGGAGGAGATTGAGGATGCTGTCATTACA
CACAAAAAAAGCGAATAGAAGCTTTCTAGACCAT
BS07810.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desat1-RD | 1152 | CG5887-PD | 1..1152 | 17..1168 | 5760 | 100 | Plus |
Desat1-RB | 1152 | CG5887-PB | 1..1152 | 17..1168 | 5760 | 100 | Plus |
Desat1-RE | 1152 | CG5887-PE | 1..1152 | 17..1168 | 5760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desat1-RD | 1934 | CG5887-RD | 106..1259 | 15..1168 | 5770 | 100 | Plus |
Desat1-RB | 1978 | CG5887-RB | 150..1303 | 15..1168 | 5770 | 100 | Plus |
Desat1-RE | 1956 | CG5887-RE | 128..1281 | 15..1168 | 5770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12445976..12446314 | 325..663 | 1695 | 100 | Plus |
3R | 32079331 | 3R | 12446623..12446941 | 850..1168 | 1595 | 100 | Plus |
3R | 32079331 | 3R | 12444807..12445118 | 15..326 | 1560 | 100 | Plus |
3R | 32079331 | 3R | 12446376..12446561 | 664..849 | 930 | 100 | Plus |
3R | 32079331 | 3R | 12436763..12437064 | 356..657 | 865 | 85.8 | Plus |
3R | 32079331 | 3R | 12437485..12437630 | 891..1036 | 370 | 83.6 | Plus |
3L | 28110227 | 3L | 11023798..11024158 | 363..723 | 350 | 73.1 | Plus |
3R | 32079331 | 3R | 30196888..30197003 | 1003..888 | 310 | 84.5 | Minus |
3R | 32079331 | 3R | 30186709..30186806 | 570..473 | 250 | 83.7 | Minus |
3R | 32079331 | 3R | 13282904..13283032 | 482..610 | 225 | 78.3 | Plus |
3R | 32079331 | 3R | 30197375..30197449 | 571..497 | 225 | 86.7 | Minus |
3R | 32079331 | 3R | 30186150..30186266 | 982..866 | 210 | 78.6 | Minus |
3R | 32079331 | 3R | 12437277..12437356 | 752..831 | 205 | 83.8 | Plus |
3R | 32079331 | 3R | 13283528..13283640 | 899..1011 | 205 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:48:00 has no hits.
BS07810.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:57 Download gff for
BS07810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat1-RE | 1..1152 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:37 Download gff for
BS07810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat1-RE | 123..1283 | 7..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:32 Download gff for
BS07810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat1-RE | 130..1281 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:57 Download gff for
BS07810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat1-RE | 123..1283 | 7..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:29 Download gff for
BS07810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desat1-RE | 130..1281 | 17..1168 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:29 Download gff for
BS07810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12444809..12445118 | 17..326 | 100 | -> | Plus |
3R | 12445978..12446314 | 327..663 | 100 | -> | Plus |
3R | 12446376..12446561 | 664..849 | 100 | -> | Plus |
3R | 12446623..12446941 | 850..1168 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:32 Download gff for
BS07810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8271700..8272036 | 327..663 | 100 | -> | Plus |
arm_3R | 8270531..8270840 | 17..326 | 100 | -> | Plus |
arm_3R | 8272098..8272283 | 664..849 | 100 | -> | Plus |
arm_3R | 8272345..8272663 | 850..1168 | 100 | | Plus |
BS07810.pep Sequence
Translation from 16 to 1167
> BS07810.pep
MPPNAQAGAQSISDSLIAAASAAADAGQSPTKLQEDSTGVLFECDVETTD
GGLVKDITVMKKAEKRRLKLVWRNIIAFGYLHLAALYGAYLMVTSAKWQT
CILAYFLYVISGLGITAGAHRLWAHRSYKAKWPLRVILVIFNTIAFQDAA
YHWARDHRVHHKYSETDADPHNATRGFFFSHVGWLLCKKHPEVKAKGKGV
DLSDLRADPILMFQKKYYMILMPIACFIIPTVVPMYAWGESFMNAWFVAT
MFRWCFILNVTWLVNSAAHKFGGRPYDKFINPSENISVAILAFGEGWHNY
HHVFPWDYKTAEFGKYSLNFTTAFIDFFAKIGWAYDLKTVSTDIIKKRVK
RTGDGTHATWGWGDVDQPKEEIEDAVITHKKSE*
BS07810.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desat1-PD | 383 | CG5887-PD | 1..383 | 1..383 | 2075 | 100 | Plus |
Desat1-PB | 383 | CG5887-PB | 1..383 | 1..383 | 2075 | 100 | Plus |
Desat1-PE | 383 | CG5887-PE | 1..383 | 1..383 | 2075 | 100 | Plus |
Desat1-PC | 383 | CG5887-PC | 1..383 | 1..383 | 2075 | 100 | Plus |
Desat1-PA | 383 | CG5887-PA | 1..383 | 1..383 | 2075 | 100 | Plus |