Clone BS07810 Report

Search the DGRC for BS07810

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptDesat1-RA
Protein status:BS07810.pep: gold
Sequenced Size:16

Clone Sequence Records

BS07810.3prime Sequence

932 bp (729 high quality bases) assembled on 2006-01-06

> BS07810.3prime
ATGGTCTAGAAAGCTTCTATTCGCTTTTTTTGTGTGTAATGACAGCATCC
TCAATCTCCTCCTTGGGCTGGTCCACATCGCCCCATCCCCACGTGGCGTG
AGTGCCGTCACCGGTACGCTTCACACGCTTCTTTATGATATCCGTGGACA
CCGTCTTGAGGTCGTAGGCCCAGCCGATCTTGGCGAAGAAATCGATGAAG
GCGGTAGTGAAGTTTAGCGAGTATTTGCCAAACTCGGCCGTCTTGTAGTC
CCAGGGGAAGACGTGATGGTAGTTATGCCATCCCTCTCCAAAGGCCAAGA
TAGCCACGGAGATGTTCTCCGAAGGATTGATAAATTTGTCGTAGGGACGG
CCACCGAACTTGTGGGCAGCACTGTTCACCAGCCAGGTTACGTTCAGAAT
GAAACACCAGCGGAACATGGTGGCCACAAACCAGGCGTTCATGAAGGATT
CACCCCAGGCGTACATGGGCACCACGGTCGGGATGATGAAGCAAGCAATC
GGCATCAAAATCATGTAGTATTTCTTCTGGAACATGAGGATTGGATCGGC
GCGCAGATCGGATAGATCGACTCCCTTGCCCTTGGCTTTCACCTCCGGGT
GCTTCTTGCACAGCAGCCAGCCGACGTGCGAGAAGAAGAAACCACGCGTG
GCGTTGTGGGGATCGGCGTCAGTCTCCGAGTATTTGTGGTGGACGCGATG
GTCGCGAGCCCAATGGTAGGCGGCATCCTGGAAGGCAATCGTGTTGAAGA
TGACCAGAATCACTCGCAGGGGCCACTTGGCCTTGTAGGAGCGATGCGCC
CACAGACGATGGGCACCGGCGGTAATGCCTAGGCCAGAAATGACGTATAG
AAAATAAGCTAAGATGCACGTCTGCCACTTGGCAGAGGTGACCATGAGGT
AGGCTCCGTAGAGGGCAGCCAGATGGAGGTAA

BS07810.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5887-PA 1152 desat1-RA 237..1152 932..17 4580 100 Minus
CG5887-PC 1152 desat1-RC 237..1152 932..17 4580 100 Minus
CG5887-PE 1152 desat1-RE 237..1152 932..17 4580 100 Minus
CG5887-PB 1152 desat1-RB 237..1152 932..17 4580 100 Minus
CG5887-PD 1152 desat1-RD 237..1152 932..17 4580 100 Minus
CG5925-PA 1086 desat2-RA 349..458 757..648 300 90.9 Minus
CG5925-PA 1086 desat2-RA 286..341 820..765 230 96.4 Minus
CG9743-PA 1263 CG9743-RA 970..1034 289..225 200 92.3 Minus
CG5925-PA 1086 desat2-RA 904..957 202..149 195 94.4 Minus
CG8630-PA 1227 CG8630-RA 859..903 286..242 150 93.3 Minus
CG9747-PA 1386 CG9747-RA 997..1040 286..243 145 93.1 Minus
CG9743-PA 1263 CG9743-RA 579..645 680..614 135 88 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
Desat1-RD 1934 CG5887-RD 344..1259 932..17 4580 100 Minus
Desat1-RB 1978 CG5887-RB 388..1303 932..17 4580 100 Minus
Desat1-RE 1956 CG5887-RE 366..1281 932..17 4580 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12445976..12446314 860..522 1695 100 Minus
3R 32079331 3R 12446623..12446941 335..17 1595 100 Minus
3R 32079331 3R 12446376..12446561 521..336 930 100 Minus
3R 32079331 3R 12436763..12437064 829..528 865 85.8 Minus
3R 32079331 3R 12437485..12437630 294..149 370 83.6 Minus
3R 32079331 3R 12445045..12445118 932..859 370 100 Minus
3L 28110227 3L 11023798..11024158 822..462 350 73.1 Minus
3R 32079331 3R 30196888..30197003 182..297 310 84.5 Plus
3R 32079331 3R 30186709..30186806 615..712 250 83.7 Plus
3R 32079331 3R 13282904..13283032 703..575 225 78.3 Minus
3R 32079331 3R 30197375..30197449 614..688 225 86.7 Plus
3R 32079331 3R 30186150..30186266 203..319 210 78.6 Plus
3R 32079331 3R 12437277..12437356 433..354 205 83.8 Minus
3R 32079331 3R 13283528..13283640 286..174 205 78.8 Minus
Blast to na_te.dros performed on 2015-02-10 21:37:32 has no hits.

BS07810.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:21 Download gff for BS07810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5887-PB 239..1152 17..930 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:38 Download gff for BS07810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5887-PC 239..1152 17..930 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:40:09 Download gff for BS07810.3prime
Subject Subject Range Query Range Percent Splice Strand
desat1-RE 366..1283 13..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:27 Download gff for BS07810.3prime
Subject Subject Range Query Range Percent Splice Strand
Desat1-RE 366..1283 13..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:27 Download gff for BS07810.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12446623..12446943 13..335 99   Minus
3R 12445045..12445118 859..932 100 -> Minus
3R 12445978..12446314 522..858 100 -> Minus
3R 12446376..12446561 336..521 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:40:09 Download gff for BS07810.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8270767..8270840 859..932 100 -> Minus
arm_3R 8271700..8272036 522..858 100 -> Minus
arm_3R 8272098..8272283 336..521 100 -> Minus
arm_3R 8272345..8272665 13..335 99   Minus

BS07810.5prime Sequence

831 bp (828 high quality bases) assembled on 2006-01-06

> BS07810.5prime
GAAGTTATCAGTCGACATGCCGCCCAACGCCCAAGCCGGTGCCCAGTCCA
TCTCAGACTCACTGATCGCAGCAGCTAGTGCCGCCGCCGACGCGGGTCAG
AGCCCCACCAAGCTGCAGGAGGACTCCACCGGAGTGCTCTTCGAGTGCGA
TGTGGAAACCACCGACGGTGGTCTTGTCAAGGACATCACCGTGATGAAGA
AGGCCGAGAAGCGCCGCCTGAAGCTCGTCTGGCGCAACATCATCGCCTTC
GGTTACCTCCATCTGGCTGCCCTCTACGGAGCCTACCTCATGGTCACCTC
TGCCAAGTGGCAGACGTGCATCTTAGCTTATTTTCTATACGTCATTTCTG
GCCTAGGCATTACCGCCGGTGCCCATCGTCTGTGGGCGCATCGCTCCTAC
AAGGCCAAGTGGCCCCTGCGAGTGATTCTGGTCATCTTCAACACGATTGC
CTTCCAGGATGCCGCCTACCATTGGGCTCGCGACCATCGCGTCCACCACA
AATACTCGGAGACTGACGCCGATCCCCACAACGCCACGCGTGGTTTCTTC
TTCTCGCACGTCGGCTGGCTGCTGTGCAAGAAGCACCCGGAGGTGAAAGC
CAAGGGCAAGGGAGTCGATCTATCCGATCTGCGCGCCGATCCAATCCTCA
TGTTCCAGAAGAAATACTACATGATTTTGATGCCGATTGCTTGCTTCATC
ATCCCGACCGTGGTGCCCATGTACGCCTGGGGTGAATCCTTCATGAACGC
CTGGTTTGTGGCCACCATGTTCCGCTGGTGTTTCATTCTGAACGTAACCT
GGCTGGTGAACAGTGCTGCCCACAAGTTCGG

BS07810.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5887-PA 1152 desat1-RA 1..815 17..831 4075 100 Plus
CG5887-PC 1152 desat1-RC 1..815 17..831 4075 100 Plus
CG5887-PE 1152 desat1-RE 1..815 17..831 4075 100 Plus
CG5887-PB 1152 desat1-RB 1..815 17..831 4075 100 Plus
CG5887-PD 1152 desat1-RD 1..815 17..831 4075 100 Plus
CG5925-PA 1086 desat2-RA 349..458 428..537 300 90.9 Plus
CG5925-PA 1086 desat2-RA 286..341 365..420 230 96.4 Plus
CG9743-PA 1263 CG9743-RA 579..645 505..571 135 88 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
Desat1-RD 1934 CG5887-RD 106..922 15..831 4085 100 Plus
Desat1-RB 1978 CG5887-RB 150..966 15..831 4085 100 Plus
Desat1-RE 1956 CG5887-RE 128..944 15..831 4085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12445976..12446314 325..663 1695 100 Plus
3R 32079331 3R 12444807..12445118 15..326 1560 100 Plus
3R 32079331 3R 12436763..12437064 356..657 865 85.8 Plus
3R 32079331 3R 12446376..12446543 664..831 840 100 Plus
3L 28110227 3L 11023798..11024158 363..723 350 73.1 Plus
3R 32079331 3R 30186709..30186806 570..473 250 83.7 Minus
3R 32079331 3R 13282904..13283032 482..610 225 78.3 Plus
3R 32079331 3R 30197375..30197449 571..497 225 86.7 Minus
3R 32079331 3R 12437277..12437356 752..831 205 83.8 Plus
Blast to na_te.dros performed on 2015-02-12 12:38:06 has no hits.

BS07810.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:22 Download gff for BS07810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5887-PB 1..815 17..831 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:39 Download gff for BS07810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5887-PC 1..815 17..831 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:02:17 Download gff for BS07810.5prime
Subject Subject Range Query Range Percent Splice Strand
desat1-RE 123..944 7..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:19 Download gff for BS07810.5prime
Subject Subject Range Query Range Percent Splice Strand
Desat1-RE 123..944 7..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:19 Download gff for BS07810.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12446376..12446543 664..831 100   Plus
3R 12444802..12445118 7..326 98 -> Plus
3R 12445978..12446314 327..663 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:02:17 Download gff for BS07810.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8270524..8270840 7..326 98 -> Plus
arm_3R 8271700..8272036 327..663 100 -> Plus
arm_3R 8272098..8272265 664..831 100   Plus

BS07810.complete Sequence

1184 bp (1184 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ635996

> BS07810.complete
GAAGTTATCAGTCGACATGCCGCCCAACGCCCAAGCCGGTGCCCAGTCCA
TCTCAGACTCACTGATCGCAGCAGCTAGTGCCGCCGCCGACGCGGGTCAG
AGCCCCACCAAGCTGCAGGAGGACTCCACCGGAGTGCTCTTCGAGTGCGA
TGTGGAAACCACCGACGGTGGTCTTGTCAAGGACATCACCGTGATGAAGA
AGGCCGAGAAGCGCCGCCTGAAGCTCGTCTGGCGCAACATCATCGCCTTC
GGTTACCTCCATCTGGCTGCCCTCTACGGAGCCTACCTCATGGTCACCTC
TGCCAAGTGGCAGACGTGCATCTTAGCTTATTTTCTATACGTCATTTCTG
GCCTAGGCATTACCGCCGGTGCCCATCGTCTGTGGGCGCATCGCTCCTAC
AAGGCCAAGTGGCCCCTGCGAGTGATTCTGGTCATCTTCAACACGATTGC
CTTCCAGGATGCCGCCTACCATTGGGCTCGCGACCATCGCGTCCACCACA
AATACTCGGAGACTGACGCCGATCCCCACAACGCCACGCGTGGTTTCTTC
TTCTCGCACGTCGGCTGGCTGCTGTGCAAGAAGCACCCGGAGGTGAAAGC
CAAGGGCAAGGGAGTCGATCTATCCGATCTGCGCGCCGATCCAATCCTCA
TGTTCCAGAAGAAATACTACATGATTTTGATGCCGATTGCTTGCTTCATC
ATCCCGACCGTGGTGCCCATGTACGCCTGGGGTGAATCCTTCATGAACGC
CTGGTTTGTGGCCACCATGTTCCGCTGGTGTTTCATTCTGAACGTAACCT
GGCTGGTGAACAGTGCTGCCCACAAGTTCGGTGGCCGTCCCTACGACAAA
TTTATCAATCCTTCGGAGAACATCTCCGTGGCTATCTTGGCCTTTGGAGA
GGGATGGCATAACTACCATCACGTCTTCCCCTGGGACTACAAGACGGCCG
AGTTTGGCAAATACTCGCTAAACTTCACTACCGCCTTCATCGATTTCTTC
GCCAAGATCGGCTGGGCCTACGACCTCAAGACGGTGTCCACGGATATCAT
AAAGAAGCGTGTGAAGCGTACCGGTGACGGCACTCACGCCACGTGGGGAT
GGGGCGATGTGGACCAGCCCAAGGAGGAGATTGAGGATGCTGTCATTACA
CACAAAAAAAGCGAATAGAAGCTTTCTAGACCAT

BS07810.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Desat1-RD 1152 CG5887-PD 1..1152 17..1168 5760 100 Plus
Desat1-RB 1152 CG5887-PB 1..1152 17..1168 5760 100 Plus
Desat1-RE 1152 CG5887-PE 1..1152 17..1168 5760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Desat1-RD 1934 CG5887-RD 106..1259 15..1168 5770 100 Plus
Desat1-RB 1978 CG5887-RB 150..1303 15..1168 5770 100 Plus
Desat1-RE 1956 CG5887-RE 128..1281 15..1168 5770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12445976..12446314 325..663 1695 100 Plus
3R 32079331 3R 12446623..12446941 850..1168 1595 100 Plus
3R 32079331 3R 12444807..12445118 15..326 1560 100 Plus
3R 32079331 3R 12446376..12446561 664..849 930 100 Plus
3R 32079331 3R 12436763..12437064 356..657 865 85.8 Plus
3R 32079331 3R 12437485..12437630 891..1036 370 83.6 Plus
3L 28110227 3L 11023798..11024158 363..723 350 73.1 Plus
3R 32079331 3R 30196888..30197003 1003..888 310 84.5 Minus
3R 32079331 3R 30186709..30186806 570..473 250 83.7 Minus
3R 32079331 3R 13282904..13283032 482..610 225 78.3 Plus
3R 32079331 3R 30197375..30197449 571..497 225 86.7 Minus
3R 32079331 3R 30186150..30186266 982..866 210 78.6 Minus
3R 32079331 3R 12437277..12437356 752..831 205 83.8 Plus
3R 32079331 3R 13283528..13283640 899..1011 205 78.8 Plus
Blast to na_te.dros performed on 2014-11-27 20:48:00 has no hits.

BS07810.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:57 Download gff for BS07810.complete
Subject Subject Range Query Range Percent Splice Strand
desat1-RE 1..1152 17..1168 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:37 Download gff for BS07810.complete
Subject Subject Range Query Range Percent Splice Strand
desat1-RE 123..1283 7..1172 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:32 Download gff for BS07810.complete
Subject Subject Range Query Range Percent Splice Strand
desat1-RE 130..1281 17..1168 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:57 Download gff for BS07810.complete
Subject Subject Range Query Range Percent Splice Strand
desat1-RE 123..1283 7..1172 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:29 Download gff for BS07810.complete
Subject Subject Range Query Range Percent Splice Strand
Desat1-RE 130..1281 17..1168 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:29 Download gff for BS07810.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12444809..12445118 17..326 100 -> Plus
3R 12445978..12446314 327..663 100 -> Plus
3R 12446376..12446561 664..849 100 -> Plus
3R 12446623..12446941 850..1168 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:32 Download gff for BS07810.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8271700..8272036 327..663 100 -> Plus
arm_3R 8270531..8270840 17..326 100 -> Plus
arm_3R 8272098..8272283 664..849 100 -> Plus
arm_3R 8272345..8272663 850..1168 100   Plus

BS07810.pep Sequence

Translation from 16 to 1167

> BS07810.pep
MPPNAQAGAQSISDSLIAAASAAADAGQSPTKLQEDSTGVLFECDVETTD
GGLVKDITVMKKAEKRRLKLVWRNIIAFGYLHLAALYGAYLMVTSAKWQT
CILAYFLYVISGLGITAGAHRLWAHRSYKAKWPLRVILVIFNTIAFQDAA
YHWARDHRVHHKYSETDADPHNATRGFFFSHVGWLLCKKHPEVKAKGKGV
DLSDLRADPILMFQKKYYMILMPIACFIIPTVVPMYAWGESFMNAWFVAT
MFRWCFILNVTWLVNSAAHKFGGRPYDKFINPSENISVAILAFGEGWHNY
HHVFPWDYKTAEFGKYSLNFTTAFIDFFAKIGWAYDLKTVSTDIIKKRVK
RTGDGTHATWGWGDVDQPKEEIEDAVITHKKSE*

BS07810.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
Desat1-PD 383 CG5887-PD 1..383 1..383 2075 100 Plus
Desat1-PB 383 CG5887-PB 1..383 1..383 2075 100 Plus
Desat1-PE 383 CG5887-PE 1..383 1..383 2075 100 Plus
Desat1-PC 383 CG5887-PC 1..383 1..383 2075 100 Plus
Desat1-PA 383 CG5887-PA 1..383 1..383 2075 100 Plus