Clone Sequence Records
BS07811.3prime Sequence
814 bp (781 high quality bases) assembled on 2006-01-06
> BS07811.3prime
ATGGTCTAGAAAGCTTTCAGAAGGCCGCATCGCCAGCATACCATGGATGC
ACCCACGGCGCCGATGGCGGCGGAGTGGGTGGATATATGGTGGGCGATGG
CTGACCATGTGTATGATGGGCCGCCGCTGCTGCCGCCGCTGCCGCTGCTG
CTGCAGCATGATGATGTGCCGCCGCAGCAGCCGCTGCCGCATGATGATGA
TGATGGTGCTGATATGGTGCCGTAAATGCCGCCGCCGCCGCTGCCGCCGC
ACTGCCGTAGTAGGATGCGGCGGCCAGGGCAGCTGCCGCCGCCGTTGTTG
GCGAAGCCGTCGATGAGGAGTGCGTCGAGGAAGCTGGCGACAGGCTGGCC
AGTCCAGCGGCACACACGCTATGCCGGCGATGCATTATATGCCGTTGGGG
TGGCGCCGCCACTGCCGCTGCAGCCGCCGGTTGCTGCTGCTGCTGCTGCG
TTTGCTGCTGCTGATGCGGATGCTGCTGCGGTTGGTGGGGCGGCGTTGGT
GCTGCCGCCTGTGTCCTTCGCTGCCTCTGCTGTTCCCACTCGGGCATGAC
ATTGCCCATGGGTGGACTTAGCATGCTGGCCGCCGCCTTGCCATACAAAT
TCGATAGATAGGCGTGCTCTACTTCGGCCATTTTCTGAGCGGCAGCCGCA
GCAGCGCGCGGATTCTTTGCCGCCGTCTGCTCGGCATGCTGGCGCTTCTT
TAGCAAACGCTGCTGCTCGTGCTGCTGCTGATGGTGGTGCTGCTGGGCTG
CTGGATGGTGCGGGTGCGGGTGTGGGTGTGGGTTTGTGGGAGTACAACAT
GTCGACTGATAACT
BS07811.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33692-PA | 783 | CG33692-RA | 16..783 | 784..17 | 3840 | 100 | Minus |
CG33692-PB | 783 | CG33692-RB | 16..783 | 784..17 | 3840 | 100 | Minus |
CG33692-PC | 783 | CG33692-RC | 16..783 | 784..17 | 3840 | 100 | Minus |
CG4013-PA | 10815 | Smr-RA | 7231..7277 | 463..417 | 135 | 91.4 | Minus |
CG4013-PB | 10815 | Smr-RB | 7231..7277 | 463..417 | 135 | 91.4 | Minus |
CG4013-PC | 10815 | Smr-RC | 7231..7277 | 463..417 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43736-RL | 7668 | CG43736-RL | 5156..5942 | 804..17 | 3900 | 99.7 | Minus |
CG43736-RI | 7387 | CG43736-RI | 4875..5661 | 804..17 | 3900 | 99.7 | Minus |
CG43736-RG | 5533 | CG43736-RG | 3021..3807 | 804..17 | 3900 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6879068..6879854 | 804..17 | 3875 | 99.7 | Minus |
X | 23542271 | X | 12691034..12691093 | 417..476 | 195 | 88.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:42:09 has no hits.
BS07811.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:24 Download gff for
BS07811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32737-PE | 1..783 | 17..800 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:40 Download gff for
BS07811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33692-PC | 1..783 | 17..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:46:10 Download gff for
BS07811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43736-RF | 3299..4091 | 13..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:12:01 Download gff for
BS07811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43736-RG | 3017..3809 | 13..808 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:12:01 Download gff for
BS07811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6879064..6879856 | 13..808 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:46:10 Download gff for
BS07811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6773097..6773889 | 13..808 | 99 | | Minus |
BS07811.5prime Sequence
813 bp (788 high quality bases) assembled on 2006-01-06
> BS07811.5prime
GAAGTTATCAGTCGACATGTTGTACTCCCACAACCCACACCCACACCCGC
ACCCGCACCATCCAGCAGCCCAGCAGCACCACCATCAGCAGCAGCACGAG
CAGCAGCGTTTGCTAAAGAAGCGCCAGCATGCCGAGCAGACGGCGGCAAA
GAATCCGCGCGCTGCTGCGGCTGCCGCTCAGAAAATGGCCGAAGTAGAGC
ACGCCTATCTATCGAATTTGTATGGCAAGGCGGCGGCCAGCATGCTAAGT
CCACCCATGGGCAATGTCATGCCCGAGTGGGAACAGCAGAGGCAGCGAAG
GACACAGGCGGCAGCACCAACGCCGCCCCACCAACCGCAGCAGCATCCGC
ATCAGCAGCAGCAAACGCAGCAGCAGCAGCAGCAACCGGCGGCTGCAGCG
GCAGTGGCGGCGCCACCCCAACGGCATATAATGCATCGCCGGCATAGCGT
GTGTGCCGCTGGACTGGCCAGCCTGTCGCCAGCTTCCTCGACGCACTCCT
CATCGACGGCTTCGCCAACAACGGCGGCGGCAGCTGCCCTGGCCGCCGCA
TCCTACTACGGCAGTGCGGCGGCAGCGGCGGCGGCGGCATTTACGGCACC
ATATCAGCACCATCATCATCATCATGCGGCAGCGGCTGCTGCGGCGGCAC
ATCATCATGCTGCAGCAGCAGCGGCAGCGGCGGCAGCAGCGGCGGCCCAT
CATACACATGGTCAGCCATCGCCCACCATATATCCACCCACTCCGCCGCC
ATCGGCGCCGTGGGTGCATCCATGGTATGCTGGCGATGCGGCCTTCTGAA
AGCTTTCTAGACC
BS07811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33692-PA | 783 | CG33692-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
CG33692-PB | 783 | CG33692-RB | 1..783 | 17..799 | 3915 | 100 | Plus |
CG33692-PC | 783 | CG33692-RC | 1..783 | 17..799 | 3915 | 100 | Plus |
CG4013-PA | 10815 | Smr-RA | 7231..7277 | 353..399 | 135 | 91.4 | Plus |
CG4013-PB | 10815 | Smr-RB | 7231..7277 | 353..399 | 135 | 91.4 | Plus |
CG4013-PC | 10815 | Smr-RC | 7231..7277 | 353..399 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:30:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43736-RL | 7668 | CG43736-RL | 5156..5942 | 13..799 | 3920 | 99.9 | Plus |
CG43736-RI | 7387 | CG43736-RI | 4875..5661 | 13..799 | 3920 | 99.9 | Plus |
CG43736-RG | 5533 | CG43736-RG | 3021..3807 | 13..799 | 3920 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:30:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6879068..6879854 | 13..799 | 3920 | 99.9 | Plus |
X | 23542271 | X | 12691034..12691093 | 399..340 | 195 | 88.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:30:41 has no hits.
BS07811.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:25 Download gff for
BS07811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32737-PE | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:42 Download gff for
BS07811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33692-PC | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:00:00 Download gff for
BS07811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43736-RF | 3299..4091 | 9..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:02 Download gff for
BS07811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43736-RG | 3017..3809 | 9..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:02 Download gff for
BS07811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6879064..6879856 | 9..803 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:00:00 Download gff for
BS07811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6773097..6773889 | 9..803 | 99 | | Plus |
BS07811.complete Sequence
815 bp (815 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ635997
> BS07811.complete
GAAGTTATCAGTCGACATGTTGTACTCCCACAACCCACACCCACACCCGC
ACCCGCACCATCCAGCAGCCCAGCAGCACCACCATCAGCAGCAGCACGAG
CAGCAGCGTTTGCTAAAGAAGCGCCAGCATGCCGAGCAGACGGCGGCAAA
GAATCCGCGCGCTGCTGCGGCTGCCGCTCAGAAAATGGCCGAAGTAGAGC
ACGCCTATCTATCGAATTTGTATGGCAAGGCGGCGGCCAGCATGCTAAGT
CCACCCATGGGCAATGTCATGCCCGAGTGGGAACAGCAGAGGCAGCGAAG
GACACAGGCGGCAGCACCAACGCCGCCCCACCAACCGCAGCAGCATCCGC
ATCAGCAGCAGCAAACGCAGCAGCAGCAGCAGCAACCGGCGGCTGCAGCG
GCAGTGGCGGCGCCACCCCAACGGCATATAATGCATCGCCGGCATAGCGT
GTGTGCCGCTGGACTGGCCAGCCTGTCGCCAGCTTCCTCGACGCACTCCT
CATCGACGGCTTCGCCAACAACGGCGGCGGCAGCTGCCCTGGCCGCCGCA
TCCTACTACGGCAGTGCGGCGGCAGCGGCGGCGGCGGCATTTACGGCACC
ATATCAGCACCATCATCATCATCATGCGGCAGCGGCTGCTGCGGCGGCAC
ATCATCATGCTGCAGCAGCAGCGGCAGCGGCGGCAGCAGCGGCGGCCCAT
CATACACATGGTCAGCCATCGCCCACCATATATCCACCCACTCCGCCGCC
ATCGGCGCCGTGGGTGCATCCATGGTATGCTGGCGATGCGGCCTTCTGAA
AGCTTTCTAGACCAT
BS07811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43736-RG | 3432 | CG43736-PG | 2646..3432 | 13..799 | 3920 | 99.9 | Plus |
CG43736-RF | 3687 | CG43736-PF | 2901..3687 | 13..799 | 3920 | 99.9 | Plus |
Smr-RG | 10824 | CG4013-PG | 7227..7286 | 340..399 | 195 | 88.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43736-RL | 7668 | CG43736-RL | 5156..5942 | 13..799 | 3920 | 99.9 | Plus |
CG43736-RI | 7387 | CG43736-RI | 4875..5661 | 13..799 | 3920 | 99.9 | Plus |
CG43736-RG | 5533 | CG43736-RG | 3021..3807 | 13..799 | 3920 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6879068..6879854 | 13..799 | 3920 | 99.9 | Plus |
X | 23542271 | X | 12691034..12691093 | 399..340 | 195 | 88.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:26:00 has no hits.
BS07811.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:58 Download gff for
BS07811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33692-RC | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:39 Download gff for
BS07811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33692-RC | 755..1547 | 9..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:02 Download gff for
BS07811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43736-RF | 3312..4088 | 22..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:58 Download gff for
BS07811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33692-RC | 755..1547 | 9..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:21 Download gff for
BS07811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43736-RG | 3030..3806 | 22..798 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:21 Download gff for
BS07811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6879077..6879853 | 22..798 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:02 Download gff for
BS07811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6773110..6773886 | 22..798 | 100 | | Plus |
BS07811.pep Sequence
Translation from 16 to 798
> BS07811.pep
MLYSHNPHPHPHPHHPAAQQHHHQQQHEQQRLLKKRQHAEQTAAKNPRAA
AAAAQKMAEVEHAYLSNLYGKAAASMLSPPMGNVMPEWEQQRQRRTQAAA
PTPPHQPQQHPHQQQQTQQQQQQPAAAAAVAAPPQRHIMHRRHSVCAAGL
ASLSPASSTHSSSTASPTTAAAAALAAASYYGSAAAAAAAAFTAPYQHHH
HHHAAAAAAAAHHHAAAAAAAAAAAAAHHTHGQPSPTIYPPTPPPSAPWV
HPWYAGDAAF*
BS07811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43736-PG | 1143 | CG43736-PG | 884..1143 | 1..260 | 1399 | 100 | Plus |
CG43736-PF | 1228 | CG43736-PF | 969..1228 | 1..260 | 1399 | 100 | Plus |
A2bp1-PF | 763 | CG32062-PF | 496..719 | 9..241 | 231 | 36 | Plus |
A2bp1-PL | 858 | CG32062-PL | 513..736 | 9..241 | 231 | 36 | Plus |
A2bp1-PE | 865 | CG32062-PE | 496..719 | 9..241 | 231 | 36 | Plus |