Clone Sequence Records
BS07812.3prime Sequence
894 bp (863 high quality bases) assembled on 2006-01-06
> BS07812.3prime
ATGGTCTAGAAAGCTTCTATACGAAGTTATGATCCTCCTTAATCATATCG
GCTGCTTTTTCAGCTATTAGGTAGACGGGTCCATTGGGATGACCCGAGAT
CAAATAGGGCATAATGCTTGCATCCACAACGCGCAGTTTGTCGATGCCAT
GGACCCGCAGTCGGGCATCCACCACCGCCGAGGGATCCGATCGAGGACCC
ATCTTGGCGGTTCCTGAATAGTGGTAAATGGTGAAGGTAAAGTGTCGTGC
ATAACATGCCCAATAGGCGCTGCTCTTCCATTTATATTTCGCACAATTGG
GTATTCTCTTTTCTAATAAGTGTGCACCGATTGCCTTAAATGCGGGCATA
TCCAGTAAACTTACTGCCTGCTCGATGCCGCGAACTGTGATGTTCATGTC
ATAGGGATTTGCGAAGTAGTTGGCATAGATCCGTGGATGCTCCTCGGGAT
TTCGGCTCTTCAGCTTGATGCGACCGCGACTCTTGGCGCGCAAAATCATC
GGGAATATCAAAAAGCCATTGGCACTCTGGCGTTCCAGTTCGCCAAACAT
GGTCTCATAGATATTCGATTGGATGCCCAATGCCAGACGTAGGGCCAAAT
TCGTTTGCAAACCACCGCCCACCACAAAGAGTTCCATATCGGCCCAAGCA
TCGGGATTACGTGCATCGTCCAGGGCGTAGAATGATATGGCCTCCACACC
ACCCGGTATGCGGAGCACTCCGCGTCCCTTCAGGAAATCTGACATTGCCT
CCGAGCGGAACATCTCGCTCGTTTGCAGCGAACTCACATTGCACAAGAAG
CTGATAGCCGGAGCTATGTGATCCTGGAGGTTGTAGCCAACGGCCAGATC
GGCCAGTGGCTTTATGCCCATCTCCCGCAATGTTTAGCGGGTCC
BS07812.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9519-PA | 1869 | CG9519-RA | 1006..1869 | 880..17 | 4320 | 100 | Minus |
CG9521-PA | 1866 | CG9521-RA | 1636..1685 | 244..195 | 175 | 94 | Minus |
CG9521-PA | 1866 | CG9521-RA | 1375..1425 | 505..455 | 155 | 92.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 00:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9519-RA | 2034 | CG9519-RA | 1049..1928 | 894..16 | 4375 | 99.9 | Minus |
CG9521-RA | 2265 | CG9521-RA | 1759..1998 | 268..29 | 390 | 77.5 | Minus |
CG9521-RA | 2265 | CG9521-RA | 1507..1625 | 520..402 | 250 | 80.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 00:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14854434..14855313 | 16..894 | 4350 | 99.9 | Plus |
X | 23542271 | X | 14851272..14851511 | 29..268 | 390 | 77.5 | Plus |
X | 23542271 | X | 14851645..14851763 | 402..520 | 250 | 80.7 | Plus |
Blast to na_te.dros performed on 2015-02-09 00:57:41 has no hits.
BS07812.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:26 Download gff for
BS07812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9519-PA | 991..1869 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:43 Download gff for
BS07812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9519-PA | 991..1869 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:50:05 Download gff for
BS07812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9519-RA | 1049..1930 | 13..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:05:19 Download gff for
BS07812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9519-RA | 1049..1930 | 13..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:05:19 Download gff for
BS07812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14854432..14855313 | 13..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:50:05 Download gff for
BS07812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14748465..14749346 | 13..894 | 99 | | Plus |
BS07812.5prime Sequence
879 bp (811 high quality bases) assembled on 2006-01-06
> BS07812.5prime
GAAGTTATCAGTCGACATGATGACTTCGCCACGAAATCACATCGGAACCC
TTCTTGTCGTCTGGCTACTGGAGTTCTCAATGGTGATTAGCCAGACTGAC
ACGGGCAATGCATTGATGGATATGCTCGAGATCTATCGTCGCGGTCAGGC
GCAATTGGATCTGGAGAATCTGGACGAGGGTCAGGTCATAACGACGAAAT
ATGATTTCATAGTGGTTGGTGCCGGCACAGCTGGTTGTGCCCTAGCCGCG
CGACTCTCCGAGAATCCCCGGTGGCGAGTGCTACTCCTGGAGGCCGGTGG
TCCCGAGAACTATGCCATGGACATACCAATTGTGGCGCATCTCTTGCAGC
TGGGCGAAATCAACTGGAAGTACAAAACGGAGCCATCGAATAGCTATTGC
CTGGCCATGAACAACAATCGCTGCAATTGGCCCAGGGGCAAGGTGATGGG
TGGCAGCTCGGTGCTCAACTATATGATGTACACCAGGGGCAATCGCCGCG
ACTACGATCGCTGGGCACGTTTGGGCAATCCGGGCTGGAGTTACGAGGAG
GTACTACCCTATTTCAAGAAGTACGAGGGCAGCGTAGTGCCGGATGCCGA
TGAGAATCTGGTGGGACGCAATGGGCCGGTGAAGGTGAGCTACTCGGAGA
CGAGGACTCGCATCGCAGACGCCTTTGTGGGAGCCACCCAAGATGCAGGA
TTGCCGCGAGGTGACTACAATGGAGATAAACAGATTCGTGTGTCCTATCT
GCAGGCGAATATCTACAATGAGACCCGTTGGAGCTCCAATCGAGCGTATC
TGTATCCCATTAANGGAAAGCGTCGAAATCTTCATGTGAAGAAGAATGCC
TTGGTTACCAAGATCTTGATTGATCCGCA
BS07812.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9519-PA | 1869 | CG9519-RA | 1..863 | 17..879 | 4296 | 99.8 | Plus |
CG9521-PA | 1866 | CG9521-RA | 376..493 | 398..515 | 490 | 96.6 | Plus |
CG9521-PA | 1866 | CG9521-RA | 208..285 | 230..307 | 240 | 92.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9519-RA | 2034 | CG9519-RA | 58..921 | 16..879 | 4309 | 99.9 | Plus |
CG9521-RA | 2265 | CG9521-RA | 325..767 | 200..642 | 1105 | 84.1 | Plus |
CG9518-RC | 3952 | CG9518-RC | 1327..1460 | 413..546 | 235 | 80.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:12:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14855441..14856304 | 879..16 | 4309 | 99.9 | Minus |
X | 23542271 | X | 14852503..14852945 | 642..200 | 1090 | 83.1 | Minus |
X | 23542271 | X | 14865481..14865614 | 546..413 | 235 | 78.4 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:12:05 has no hits.
BS07812.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:27 Download gff for
BS07812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9519-PA | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:45 Download gff for
BS07812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9519-PA | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:47 Download gff for
BS07812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9519-RA | 56..920 | 12..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:41:47 Download gff for
BS07812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9519-RA | 56..920 | 12..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:41:47 Download gff for
BS07812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14855442..14856306 | 12..878 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:47 Download gff for
BS07812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14749475..14750339 | 12..878 | 99 | | Minus |
BS07812.complete Sequence
1901 bp assembled on 2008-01-03
> BS07812.complete
GAAGTTATCAGTCGACATGATGACTTCGCCACGAAATCACATCGGAACCC
TTCTTGTCGTCTGGCTACTGGAGTTCTCAATGGTGATTAGCCAGACTGAC
ACGGGCAATGCATTGATGGATATGCTCGAGATCTATCGTCGCGGTCAGGC
GCAATTGGATCTGGAGAATCTGGACGAGGGTCAGGTCATAACGACGAAAT
ATGATTTCATAGTGGTTGGTGCCGGCACAGCTGGTTGTGCCCTAGCCGCG
CGACTCTCCGAGAATCCCCGGTGGCGAGTGCTACTCCTGGAGGCCGGTGG
TCCCGAGAACTATGCCATGGACATACCAATTGTGGCGCATCTCTTGCAGC
TGGGCGAAATCAACTGGAAGTACAAAACGGAGCCATCGAATAGCTATTGC
CTGGCCATGAACAACAATCGCTGCAATTGGCCCAGGGGCAAGGTGATGGG
TGGCAGCTCGGTGCTCAACTATATGATGTACACCAGGGGCAATCGCCGCG
ACTACGATCGCTGGGCACGTTTGGGCAATCCGGGCTGGAGTTACGAGGAG
GTACTACCCTATTTCAAGAAGTACGAGGGCAGCGTAGTGCCGGATGCCGA
TGAGAATCTGGTGGGACGCAATGGGCCGGTGAAGGTGAGCTACTCGGAGA
CGAGGACTCGCATCGCAGACGCCTTTGTGGGAGCCACCCAAGATGCAGGA
TTGCCGCGAGGTGACTACAATGGAGATAAACAGATTCGTGTGTCCTATCT
GCAGGCGAATATCTACAATGAGACCCGTTGGAGCTCCAATCGAGCGTATC
TGTATCCCATTAAGGGAAAGCGTCGAAATCTTCATGTGAAGAAGAATGCC
TTGGTTACCAAGATCTTGATTGATCCGCAGACGAAATCGGCATTTGGTAT
AATCGTCAAAATGGATGGCAAAATGCAAAAGATTTTGGCCAGAAAAGAGG
TCATTCTATCGGCGGGTGCCATCAATACACCCCAGCTACTGATGCTCTCC
GGCGTGGGACCCGCTAAACATTTGCGGGAGATGGGCATAAAGCCACTGGC
CGATCTGGCCGTTGGCTACAACCTCCAGGATCACATAGCTCCGGCTATCA
GCTTCTTGTGCAATGTGAGTTCGCTGCAAACGAGCGAGATGTTCCGCTCG
GAGGCAATGTCAGATTTCCTGAAGGGACGCGGAGTGCTCCGCATACCGGG
TGGTGTGGAGGCCATATCATTCTACGCCCTGGACGATGCACGTAATCCCG
ATGCTTGGGCCGATATGGAACTCTTTGTGGTGGGCGGTGGTTTGCAAACG
AATTTGGCCCTACGTCTGGCATTGGGCATCCAATCGAATATCTATGAGAC
CATGTTTGGCGAACTGGAACGCCAGAGTGCCAATGGCTTTTTGATATTCC
CGATGATTTTGCGCGCCAAGAGTCGCGGTCGCATCAAGCTGAAGAGCCGA
AATCCCGAGGAGCATCCACGGATCTATGCCAACTACTTCGCAAATCCCTA
TGACATGAACATCACAGTTCGCGGCATCGAGCAGGCAGTAAGTTTACTGG
ATATGCCCGCATTTAAGGCAATCGGTGCACACTTATTAGAAAAGAGAATA
CCCAATTGTGCGAAATATAAATGGAAGAGCAGCGCCTATTGGGCATGTTA
TGCACGACACTTTACCTTCACCATTTACCACTATTCAGGAACCGCCAAGA
TGGGTCCTCGATCGGATCCCTCGGCGGTGGTGGATGCCCGACTGCGGGTC
CATGGCATCGACAAACTGCGCGTTGTGGATGCAAGCATTATGCCCTATTT
GATCTCGGGTCATCCCAATGGACCCGTCTACCTAATAGCTGAAAAAGCAG
CCGATATGATTAAGGAGGATCATAACTTCGTATAGAAGCTTTCTAGACCA
T
BS07812.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9519-RA | 1869 | CG9519-PA | 1..1869 | 17..1885 | 9345 | 100 | Plus |
CG9521-RA | 1866 | CG9521-PA | 178..1073 | 200..1095 | 1405 | 77.1 | Plus |
CG9521-RA | 1866 | CG9521-PA | 1612..1851 | 1634..1873 | 390 | 77.5 | Plus |
CG9521-RA | 1866 | CG9521-PA | 1360..1478 | 1382..1500 | 250 | 80.7 | Plus |
CG9518-RC | 2112 | CG9518-PC | 382..515 | 413..546 | 235 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9519-RA | 2034 | CG9519-RA | 58..1928 | 16..1886 | 9355 | 100 | Plus |
CG9521-RA | 2265 | CG9521-RA | 325..1220 | 200..1095 | 1405 | 77.1 | Plus |
CG9521-RA | 2265 | CG9521-RA | 1759..1998 | 1634..1873 | 390 | 77.5 | Plus |
CG9521-RA | 2265 | CG9521-RA | 1507..1625 | 1382..1500 | 250 | 80.7 | Plus |
CG9518-RC | 3952 | CG9518-RC | 1327..1460 | 413..546 | 235 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14854434..14856304 | 1886..16 | 9355 | 100 | Minus |
X | 23542271 | X | 14852050..14852945 | 1095..200 | 1405 | 77.1 | Minus |
X | 23542271 | X | 14851272..14851511 | 1873..1634 | 390 | 77.5 | Minus |
X | 23542271 | X | 14851645..14851763 | 1500..1382 | 250 | 80.7 | Minus |
X | 23542271 | X | 14865481..14865614 | 546..413 | 235 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:15:43 has no hits.
BS07812.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:13 Download gff for
BS07812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9519-RA | 1..1869 | 17..1885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:46 Download gff for
BS07812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9519-RA | 59..1927 | 17..1885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:24 Download gff for
BS07812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9519-RA | 59..1927 | 17..1885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:13 Download gff for
BS07812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9519-RA | 56..1930 | 12..1889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:10 Download gff for
BS07812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9519-RA | 59..1927 | 17..1885 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:10 Download gff for
BS07812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14854435..14856303 | 17..1885 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:24 Download gff for
BS07812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14748468..14750336 | 17..1885 | 100 | | Minus |
BS07812.pep Sequence
Translation from 16 to 1884
> BS07812.pep
MMTSPRNHIGTLLVVWLLEFSMVISQTDTGNALMDMLEIYRRGQAQLDLE
NLDEGQVITTKYDFIVVGAGTAGCALAARLSENPRWRVLLLEAGGPENYA
MDIPIVAHLLQLGEINWKYKTEPSNSYCLAMNNNRCNWPRGKVMGGSSVL
NYMMYTRGNRRDYDRWARLGNPGWSYEEVLPYFKKYEGSVVPDADENLVG
RNGPVKVSYSETRTRIADAFVGATQDAGLPRGDYNGDKQIRVSYLQANIY
NETRWSSNRAYLYPIKGKRRNLHVKKNALVTKILIDPQTKSAFGIIVKMD
GKMQKILARKEVILSAGAINTPQLLMLSGVGPAKHLREMGIKPLADLAVG
YNLQDHIAPAISFLCNVSSLQTSEMFRSEAMSDFLKGRGVLRIPGGVEAI
SFYALDDARNPDAWADMELFVVGGGLQTNLALRLALGIQSNIYETMFGEL
ERQSANGFLIFPMILRAKSRGRIKLKSRNPEEHPRIYANYFANPYDMNIT
VRGIEQAVSLLDMPAFKAIGAHLLEKRIPNCAKYKWKSSAYWACYARHFT
FTIYHYSGTAKMGPRSDPSAVVDARLRVHGIDKLRVVDASIMPYLISGHP
NGPVYLIAEKAADMIKEDHNFV*
BS07812.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9519-PA | 622 | CG9519-PA | 1..622 | 1..622 | 3253 | 100 | Plus |
CG9521-PA | 621 | CG9521-PA | 22..620 | 24..622 | 2164 | 66.9 | Plus |
CG9518-PC | 703 | CG9518-PC | 56..616 | 61..618 | 1245 | 45.6 | Plus |
CG9518-PB | 703 | CG9518-PB | 56..616 | 61..618 | 1245 | 45.6 | Plus |
CG9518-PA | 703 | CG9518-PA | 56..616 | 61..618 | 1245 | 45.6 | Plus |