Clone BS07812 Report

Search the DGRC for BS07812

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG9519-RA
Protein status:BS07812.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07812.3prime Sequence

894 bp (863 high quality bases) assembled on 2006-01-06

> BS07812.3prime
ATGGTCTAGAAAGCTTCTATACGAAGTTATGATCCTCCTTAATCATATCG
GCTGCTTTTTCAGCTATTAGGTAGACGGGTCCATTGGGATGACCCGAGAT
CAAATAGGGCATAATGCTTGCATCCACAACGCGCAGTTTGTCGATGCCAT
GGACCCGCAGTCGGGCATCCACCACCGCCGAGGGATCCGATCGAGGACCC
ATCTTGGCGGTTCCTGAATAGTGGTAAATGGTGAAGGTAAAGTGTCGTGC
ATAACATGCCCAATAGGCGCTGCTCTTCCATTTATATTTCGCACAATTGG
GTATTCTCTTTTCTAATAAGTGTGCACCGATTGCCTTAAATGCGGGCATA
TCCAGTAAACTTACTGCCTGCTCGATGCCGCGAACTGTGATGTTCATGTC
ATAGGGATTTGCGAAGTAGTTGGCATAGATCCGTGGATGCTCCTCGGGAT
TTCGGCTCTTCAGCTTGATGCGACCGCGACTCTTGGCGCGCAAAATCATC
GGGAATATCAAAAAGCCATTGGCACTCTGGCGTTCCAGTTCGCCAAACAT
GGTCTCATAGATATTCGATTGGATGCCCAATGCCAGACGTAGGGCCAAAT
TCGTTTGCAAACCACCGCCCACCACAAAGAGTTCCATATCGGCCCAAGCA
TCGGGATTACGTGCATCGTCCAGGGCGTAGAATGATATGGCCTCCACACC
ACCCGGTATGCGGAGCACTCCGCGTCCCTTCAGGAAATCTGACATTGCCT
CCGAGCGGAACATCTCGCTCGTTTGCAGCGAACTCACATTGCACAAGAAG
CTGATAGCCGGAGCTATGTGATCCTGGAGGTTGTAGCCAACGGCCAGATC
GGCCAGTGGCTTTATGCCCATCTCCCGCAATGTTTAGCGGGTCC

BS07812.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9519-PA 1869 CG9519-RA 1006..1869 880..17 4320 100 Minus
CG9521-PA 1866 CG9521-RA 1636..1685 244..195 175 94 Minus
CG9521-PA 1866 CG9521-RA 1375..1425 505..455 155 92.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 00:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9519-RA 2034 CG9519-RA 1049..1928 894..16 4375 99.9 Minus
CG9521-RA 2265 CG9521-RA 1759..1998 268..29 390 77.5 Minus
CG9521-RA 2265 CG9521-RA 1507..1625 520..402 250 80.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 00:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14854434..14855313 16..894 4350 99.9 Plus
X 23542271 X 14851272..14851511 29..268 390 77.5 Plus
X 23542271 X 14851645..14851763 402..520 250 80.7 Plus
Blast to na_te.dros performed on 2015-02-09 00:57:41 has no hits.

BS07812.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:26 Download gff for BS07812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9519-PA 991..1869 17..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:43 Download gff for BS07812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9519-PA 991..1869 17..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:50:05 Download gff for BS07812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9519-RA 1049..1930 13..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:05:19 Download gff for BS07812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9519-RA 1049..1930 13..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:05:19 Download gff for BS07812.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14854432..14855313 13..894 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:50:05 Download gff for BS07812.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14748465..14749346 13..894 99   Plus

BS07812.5prime Sequence

879 bp (811 high quality bases) assembled on 2006-01-06

> BS07812.5prime
GAAGTTATCAGTCGACATGATGACTTCGCCACGAAATCACATCGGAACCC
TTCTTGTCGTCTGGCTACTGGAGTTCTCAATGGTGATTAGCCAGACTGAC
ACGGGCAATGCATTGATGGATATGCTCGAGATCTATCGTCGCGGTCAGGC
GCAATTGGATCTGGAGAATCTGGACGAGGGTCAGGTCATAACGACGAAAT
ATGATTTCATAGTGGTTGGTGCCGGCACAGCTGGTTGTGCCCTAGCCGCG
CGACTCTCCGAGAATCCCCGGTGGCGAGTGCTACTCCTGGAGGCCGGTGG
TCCCGAGAACTATGCCATGGACATACCAATTGTGGCGCATCTCTTGCAGC
TGGGCGAAATCAACTGGAAGTACAAAACGGAGCCATCGAATAGCTATTGC
CTGGCCATGAACAACAATCGCTGCAATTGGCCCAGGGGCAAGGTGATGGG
TGGCAGCTCGGTGCTCAACTATATGATGTACACCAGGGGCAATCGCCGCG
ACTACGATCGCTGGGCACGTTTGGGCAATCCGGGCTGGAGTTACGAGGAG
GTACTACCCTATTTCAAGAAGTACGAGGGCAGCGTAGTGCCGGATGCCGA
TGAGAATCTGGTGGGACGCAATGGGCCGGTGAAGGTGAGCTACTCGGAGA
CGAGGACTCGCATCGCAGACGCCTTTGTGGGAGCCACCCAAGATGCAGGA
TTGCCGCGAGGTGACTACAATGGAGATAAACAGATTCGTGTGTCCTATCT
GCAGGCGAATATCTACAATGAGACCCGTTGGAGCTCCAATCGAGCGTATC
TGTATCCCATTAANGGAAAGCGTCGAAATCTTCATGTGAAGAAGAATGCC
TTGGTTACCAAGATCTTGATTGATCCGCA

BS07812.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9519-PA 1869 CG9519-RA 1..863 17..879 4296 99.8 Plus
CG9521-PA 1866 CG9521-RA 376..493 398..515 490 96.6 Plus
CG9521-PA 1866 CG9521-RA 208..285 230..307 240 92.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9519-RA 2034 CG9519-RA 58..921 16..879 4309 99.9 Plus
CG9521-RA 2265 CG9521-RA 325..767 200..642 1105 84.1 Plus
CG9518-RC 3952 CG9518-RC 1327..1460 413..546 235 80.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14855441..14856304 879..16 4309 99.9 Minus
X 23542271 X 14852503..14852945 642..200 1090 83.1 Minus
X 23542271 X 14865481..14865614 546..413 235 78.4 Minus
Blast to na_te.dros performed on 2015-02-09 22:12:05 has no hits.

BS07812.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:27 Download gff for BS07812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9519-PA 1..862 17..878 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:45 Download gff for BS07812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9519-PA 1..862 17..878 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:47 Download gff for BS07812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9519-RA 56..920 12..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:41:47 Download gff for BS07812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9519-RA 56..920 12..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:41:47 Download gff for BS07812.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14855442..14856306 12..878 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:47 Download gff for BS07812.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14749475..14750339 12..878 99   Minus

BS07812.complete Sequence

1901 bp assembled on 2008-01-03

> BS07812.complete
GAAGTTATCAGTCGACATGATGACTTCGCCACGAAATCACATCGGAACCC
TTCTTGTCGTCTGGCTACTGGAGTTCTCAATGGTGATTAGCCAGACTGAC
ACGGGCAATGCATTGATGGATATGCTCGAGATCTATCGTCGCGGTCAGGC
GCAATTGGATCTGGAGAATCTGGACGAGGGTCAGGTCATAACGACGAAAT
ATGATTTCATAGTGGTTGGTGCCGGCACAGCTGGTTGTGCCCTAGCCGCG
CGACTCTCCGAGAATCCCCGGTGGCGAGTGCTACTCCTGGAGGCCGGTGG
TCCCGAGAACTATGCCATGGACATACCAATTGTGGCGCATCTCTTGCAGC
TGGGCGAAATCAACTGGAAGTACAAAACGGAGCCATCGAATAGCTATTGC
CTGGCCATGAACAACAATCGCTGCAATTGGCCCAGGGGCAAGGTGATGGG
TGGCAGCTCGGTGCTCAACTATATGATGTACACCAGGGGCAATCGCCGCG
ACTACGATCGCTGGGCACGTTTGGGCAATCCGGGCTGGAGTTACGAGGAG
GTACTACCCTATTTCAAGAAGTACGAGGGCAGCGTAGTGCCGGATGCCGA
TGAGAATCTGGTGGGACGCAATGGGCCGGTGAAGGTGAGCTACTCGGAGA
CGAGGACTCGCATCGCAGACGCCTTTGTGGGAGCCACCCAAGATGCAGGA
TTGCCGCGAGGTGACTACAATGGAGATAAACAGATTCGTGTGTCCTATCT
GCAGGCGAATATCTACAATGAGACCCGTTGGAGCTCCAATCGAGCGTATC
TGTATCCCATTAAGGGAAAGCGTCGAAATCTTCATGTGAAGAAGAATGCC
TTGGTTACCAAGATCTTGATTGATCCGCAGACGAAATCGGCATTTGGTAT
AATCGTCAAAATGGATGGCAAAATGCAAAAGATTTTGGCCAGAAAAGAGG
TCATTCTATCGGCGGGTGCCATCAATACACCCCAGCTACTGATGCTCTCC
GGCGTGGGACCCGCTAAACATTTGCGGGAGATGGGCATAAAGCCACTGGC
CGATCTGGCCGTTGGCTACAACCTCCAGGATCACATAGCTCCGGCTATCA
GCTTCTTGTGCAATGTGAGTTCGCTGCAAACGAGCGAGATGTTCCGCTCG
GAGGCAATGTCAGATTTCCTGAAGGGACGCGGAGTGCTCCGCATACCGGG
TGGTGTGGAGGCCATATCATTCTACGCCCTGGACGATGCACGTAATCCCG
ATGCTTGGGCCGATATGGAACTCTTTGTGGTGGGCGGTGGTTTGCAAACG
AATTTGGCCCTACGTCTGGCATTGGGCATCCAATCGAATATCTATGAGAC
CATGTTTGGCGAACTGGAACGCCAGAGTGCCAATGGCTTTTTGATATTCC
CGATGATTTTGCGCGCCAAGAGTCGCGGTCGCATCAAGCTGAAGAGCCGA
AATCCCGAGGAGCATCCACGGATCTATGCCAACTACTTCGCAAATCCCTA
TGACATGAACATCACAGTTCGCGGCATCGAGCAGGCAGTAAGTTTACTGG
ATATGCCCGCATTTAAGGCAATCGGTGCACACTTATTAGAAAAGAGAATA
CCCAATTGTGCGAAATATAAATGGAAGAGCAGCGCCTATTGGGCATGTTA
TGCACGACACTTTACCTTCACCATTTACCACTATTCAGGAACCGCCAAGA
TGGGTCCTCGATCGGATCCCTCGGCGGTGGTGGATGCCCGACTGCGGGTC
CATGGCATCGACAAACTGCGCGTTGTGGATGCAAGCATTATGCCCTATTT
GATCTCGGGTCATCCCAATGGACCCGTCTACCTAATAGCTGAAAAAGCAG
CCGATATGATTAAGGAGGATCATAACTTCGTATAGAAGCTTTCTAGACCA
T

BS07812.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9519-RA 1869 CG9519-PA 1..1869 17..1885 9345 100 Plus
CG9521-RA 1866 CG9521-PA 178..1073 200..1095 1405 77.1 Plus
CG9521-RA 1866 CG9521-PA 1612..1851 1634..1873 390 77.5 Plus
CG9521-RA 1866 CG9521-PA 1360..1478 1382..1500 250 80.7 Plus
CG9518-RC 2112 CG9518-PC 382..515 413..546 235 78.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9519-RA 2034 CG9519-RA 58..1928 16..1886 9355 100 Plus
CG9521-RA 2265 CG9521-RA 325..1220 200..1095 1405 77.1 Plus
CG9521-RA 2265 CG9521-RA 1759..1998 1634..1873 390 77.5 Plus
CG9521-RA 2265 CG9521-RA 1507..1625 1382..1500 250 80.7 Plus
CG9518-RC 3952 CG9518-RC 1327..1460 413..546 235 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14854434..14856304 1886..16 9355 100 Minus
X 23542271 X 14852050..14852945 1095..200 1405 77.1 Minus
X 23542271 X 14851272..14851511 1873..1634 390 77.5 Minus
X 23542271 X 14851645..14851763 1500..1382 250 80.7 Minus
X 23542271 X 14865481..14865614 546..413 235 78.4 Minus
Blast to na_te.dros performed on 2014-11-27 10:15:43 has no hits.

BS07812.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:13 Download gff for BS07812.complete
Subject Subject Range Query Range Percent Splice Strand
CG9519-RA 1..1869 17..1885 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:46 Download gff for BS07812.complete
Subject Subject Range Query Range Percent Splice Strand
CG9519-RA 59..1927 17..1885 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:24 Download gff for BS07812.complete
Subject Subject Range Query Range Percent Splice Strand
CG9519-RA 59..1927 17..1885 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:13 Download gff for BS07812.complete
Subject Subject Range Query Range Percent Splice Strand
CG9519-RA 56..1930 12..1889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:10 Download gff for BS07812.complete
Subject Subject Range Query Range Percent Splice Strand
CG9519-RA 59..1927 17..1885 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:10 Download gff for BS07812.complete
Subject Subject Range Query Range Percent Splice Strand
X 14854435..14856303 17..1885 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:24 Download gff for BS07812.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14748468..14750336 17..1885 100   Minus

BS07812.pep Sequence

Translation from 16 to 1884

> BS07812.pep
MMTSPRNHIGTLLVVWLLEFSMVISQTDTGNALMDMLEIYRRGQAQLDLE
NLDEGQVITTKYDFIVVGAGTAGCALAARLSENPRWRVLLLEAGGPENYA
MDIPIVAHLLQLGEINWKYKTEPSNSYCLAMNNNRCNWPRGKVMGGSSVL
NYMMYTRGNRRDYDRWARLGNPGWSYEEVLPYFKKYEGSVVPDADENLVG
RNGPVKVSYSETRTRIADAFVGATQDAGLPRGDYNGDKQIRVSYLQANIY
NETRWSSNRAYLYPIKGKRRNLHVKKNALVTKILIDPQTKSAFGIIVKMD
GKMQKILARKEVILSAGAINTPQLLMLSGVGPAKHLREMGIKPLADLAVG
YNLQDHIAPAISFLCNVSSLQTSEMFRSEAMSDFLKGRGVLRIPGGVEAI
SFYALDDARNPDAWADMELFVVGGGLQTNLALRLALGIQSNIYETMFGEL
ERQSANGFLIFPMILRAKSRGRIKLKSRNPEEHPRIYANYFANPYDMNIT
VRGIEQAVSLLDMPAFKAIGAHLLEKRIPNCAKYKWKSSAYWACYARHFT
FTIYHYSGTAKMGPRSDPSAVVDARLRVHGIDKLRVVDASIMPYLISGHP
NGPVYLIAEKAADMIKEDHNFV*

BS07812.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9519-PA 622 CG9519-PA 1..622 1..622 3253 100 Plus
CG9521-PA 621 CG9521-PA 22..620 24..622 2164 66.9 Plus
CG9518-PC 703 CG9518-PC 56..616 61..618 1245 45.6 Plus
CG9518-PB 703 CG9518-PB 56..616 61..618 1245 45.6 Plus
CG9518-PA 703 CG9518-PA 56..616 61..618 1245 45.6 Plus