Clone Sequence Records
BS07814.3prime Sequence
929 bp (904 high quality bases) assembled on 2006-01-06
> BS07814.3prime
ATGGTCTAGAAAGCTTTTACAAACGGCTGCGGTGGGTTGACGCAGTCGCT
CGTGTTGGTGGAAGTACCCGGCCTAGGAATCGCTTCTCTGCCCGGCGATA
ATCGTTCCAGTCGAGGTCGGCGTACCCGGCGTAGCTGGGGTACCACCAGT
AGCTCTGCATGGGATCGGCGTAGTCGGGGGCGGCCGCGGGCAACAGCATC
TCTTCATCCTCGCGCTTCTGCTGCACTCCGTGGACCGGCGAGGACTTCAG
AGCTCCCAGGTTACGTTTCTCGGCCCCAGCACGCTGGATGTGACCGTGCT
GCGAGTTGTAGCGTGCGACGGCGGCCACATTGCGCTTTGGATCTCGGTGG
GTGGAGGGAGCACTCTGCAGACGGGCCATAGTTGCGATGTTTCGCTTGCC
GTTGGGAATAGGCAGCTGGAAGTCGCGGGCCAGGGTGCCCACGTTGCGCT
TTCCATATGTCATCAATCCGCCGGCCCTGGCCAAGGAGCCGATGTAGCGC
TTCTGTTCACTCGGTTCTCCGGAGTCCGCGTCGCCGTAATCCTCTCCAGG
CTCTGCCGTGGGCAGTTGCCCGTTTTTAGCCAGAGTGGCCAAGCTTCTCT
TCGGAGCGTTAAGGAGGCCTTGGGCGGCCAGTGCGGCCACCGAACGTTTG
TCCTCCTCCAGATAATCGGGGTACTCGCCCAAAGGCTGTTCTTCGCCCAC
GGCCAACTGTCTTTCCCGAAGTAAGTTTTTCAGTTGATTGCGCAATGCGG
AGGCGTGAAGCTGGTACTCGGGACTGGGGCTCATCAGTTGATTTATAAGG
GACTCCATTTCGCACGGCGACACATTGGCGACATCATCAGTAGCACTCAC
AATAATGGACCGTGGCTGAATAGCGGCATTGAGCAGCATGGAGAGCAACA
GCATTAGCCGCCTGCTGCTGTGCGCAGAT
BS07814.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3441-PA | 930 | Nplp1-RA | 18..930 | 929..17 | 4565 | 100 | Minus |
CG3441-PB | 1143 | Nplp1-RB | 18..874 | 929..73 | 4285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nplp1-RA | 2044 | CG3441-RA | 249..1161 | 929..17 | 4565 | 100 | Minus |
Nplp1-RC | 2695 | CG3441-RC | 249..1105 | 929..73 | 4285 | 100 | Minus |
Nplp1-RB | 2313 | CG3441-RB | 249..1105 | 929..73 | 4285 | 100 | Minus |
Nplp1-RC | 2695 | CG3441-RC | 1369..1424 | 72..17 | 280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25036845..25037531 | 758..72 | 3420 | 99.9 | Minus |
2R | 25286936 | 2R | 25036593..25036713 | 874..754 | 605 | 100 | Minus |
2R | 25286936 | 2R | 25039049..25039106 | 74..17 | 290 | 100 | Minus |
2R | 25286936 | 2R | 25032625..25032680 | 929..874 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:37:31 has no hits.
BS07814.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:30 Download gff for
BS07814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-PA | 18..930 | 17..929 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:49 Download gff for
BS07814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3441-PA | 18..930 | 17..929 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:34 Download gff for
BS07814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 249..1171 | 9..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:14:39 Download gff for
BS07814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 249..1171 | 9..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:14:39 Download gff for
BS07814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25032625..25032679 | 875..929 | 100 | -> | Minus |
2R | 25036593..25036712 | 755..874 | 100 | -> | Minus |
2R | 25036849..25037530 | 73..754 | 100 | -> | Minus |
2R | 25039051..25039116 | 9..72 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:34 Download gff for
BS07814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20920148..20920202 | 875..929 | 100 | -> | Minus |
arm_2R | 20924116..20924235 | 755..874 | 100 | -> | Minus |
arm_2R | 20924372..20925053 | 73..754 | 100 | -> | Minus |
arm_2R | 20926574..20926639 | 9..72 | 93 | | Minus |
BS07814.5prime Sequence
890 bp (805 high quality bases) assembled on 2006-01-06
> BS07814.5prime
GAAGTTATCAGTCGACATGCAGGCGGTGCTCCAATCTGCGCACAGCAGCA
GGCGGCTAATGCTGTTGCTCTCCATGCTGCTCAATGCCGCTATTCAGCCA
CGGTCCATTATTGTGAGTGCTACTGATGATGTCGCCAATGTGTCGCCGTG
CGAAATGGAGTCCCTTATAAATCAACTGATGAGCCCCAGTCCCGAGTACC
AGCTTCACGCCTCCGCATTGCGCAATCAACTGAAAAACTTACTTCGGGAA
AGACAGTTGGCCGTGGGCGAAGAACAGCCTTTGGGCGAGTACCCCGATTA
TCTGGAGGAGGACAAACGTTCGGTGGCCGCACTGGCCGCCCAAGGCCTCC
TTAACGCTCCGAAGAGAAGCTTGGCCACTCTGGCTAAAAACGGGCAACTG
CCCACGGCAGAGCCTGGAGAGGATTACGGCGACGCGGACTCCGGAGAACC
GAGTGAACAGAAGCGCTACATCGGCTCCTTGGCCAGGGCCGGCGGATTGA
TGACATATGGAAAGCGCAACGTGGGCACCCTGGCCCGCGACTTCCAGCTG
CCTATTCCCAACGGCAAGCGAAACATCGCAACTATGGCCCGTCTGCAGAG
TGCTCCCTCCACCCACCGAGATCCAAAGCGCAATGTGGCCGCCGTCGCAC
GCTACAACTCGCAGCACGGTCACATCCAGCGTGCTGGGGCCGAGAAACGT
AACCTGGGAGCTCTGAAGTCCTCGCCGGTCCACGGAGTGCAGCAGAAGCG
CGAGGATGAAGAGATGCTGTTGCCCGCGGCCGCCCCCGACTACGCCGATC
CCATGCAGAGCTACTGGTGGTACCCCAGCTACGCCGGGTACGCCGACCTC
GACTGGAACGATTATCGCCGGGCAGAGAAGCGATTCCTAG
BS07814.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3441-PA | 930 | Nplp1-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
CG3441-PB | 1143 | Nplp1-RB | 1..874 | 17..890 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:36:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nplp1-RC | 2695 | CG3441-RC | 232..1105 | 17..890 | 4370 | 100 | Plus |
Nplp1-RB | 2313 | CG3441-RB | 232..1105 | 17..890 | 4370 | 100 | Plus |
Nplp1-RA | 2044 | CG3441-RA | 232..1105 | 17..890 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25036845..25037530 | 205..890 | 3415 | 99.9 | Plus |
2R | 25286936 | 2R | 25036593..25036713 | 89..209 | 605 | 100 | Plus |
2R | 25286936 | 2R | 25032608..25032680 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:36:43 has no hits.
BS07814.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:31 Download gff for
BS07814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:50 Download gff for
BS07814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3441-PB | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:25 Download gff for
BS07814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 224..1105 | 9..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:58:26 Download gff for
BS07814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 224..1105 | 9..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:58:26 Download gff for
BS07814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25032600..25032679 | 9..88 | 96 | -> | Plus |
2R | 25036593..25036712 | 89..208 | 100 | -> | Plus |
2R | 25036849..25037530 | 209..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:25 Download gff for
BS07814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20920123..20920202 | 9..88 | 96 | -> | Plus |
arm_2R | 20924116..20924235 | 89..208 | 100 | -> | Plus |
arm_2R | 20924372..20925053 | 209..890 | 100 | | Plus |
BS07814.complete Sequence
962 bp (962 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ635998
> BS07814.complete
GAAGTTATCAGTCGACATGCAGGCGGTGCTCCAATCTGCGCACAGCAGCA
GGCGGCTAATGCTGTTGCTCTCCATGCTGCTCAATGCCGCTATTCAGCCA
CGGTCCATTATTGTGAGTGCTACTGATGATGTCGCCAATGTGTCGCCGTG
CGAAATGGAGTCCCTTATAAATCAACTGATGAGCCCCAGTCCCGAGTACC
AGCTTCACGCCTCCGCATTGCGCAATCAACTGAAAAACTTACTTCGGGAA
AGACAGTTGGCCGTGGGCGAAGAACAGCCTTTGGGCGAGTACCCCGATTA
TCTGGAGGAGGACAAACGTTCGGTGGCCGCACTGGCCGCCCAAGGCCTCC
TTAACGCTCCGAAGAGAAGCTTGGCCACTCTGGCTAAAAACGGGCAACTG
CCCACGGCAGAGCCTGGAGAGGATTACGGCGACGCGGACTCCGGAGAACC
GAGTGAACAGAAGCGCTACATCGGCTCCTTGGCCAGGGCCGGCGGATTGA
TGACATATGGAAAGCGCAACGTGGGCACCCTGGCCCGCGACTTCCAGCTG
CCTATTCCCAACGGCAAGCGAAACATCGCAACTATGGCCCGTCTGCAGAG
TGCTCCCTCCACCCACCGAGATCCAAAGCGCAATGTGGCCGCCGTCGCAC
GCTACAACTCGCAGCACGGTCACATCCAGCGTGCTGGGGCCGAGAAACGT
AACCTGGGAGCTCTGAAGTCCTCGCCGGTCCACGGAGTGCAGCAGAAGCG
CGAGGATGAAGAGATGCTGTTGCCCGCGGCCGCCCCCGACTACGCCGATC
CCATGCAGAGCTACTGGTGGTACCCCAGCTACGCCGGGTACGCCGACCTC
GACTGGAACGATTATCGCCGGGCAGAGAAGCGATTCCTAGGCCGGGTACT
TCCACCAACACGAGCGACTGCGTCAACCCACCGCAGCCGTTTGTAAAAGC
TTTCTAGACCAT
BS07814.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nplp1-RA | 930 | CG3441-PA | 1..930 | 17..946 | 4650 | 100 | Plus |
Nplp1-RC | 1464 | CG3441-PC | 1..874 | 17..890 | 4370 | 100 | Plus |
Nplp1-RB | 1143 | CG3441-PB | 1..874 | 17..890 | 4370 | 100 | Plus |
Nplp1-RC | 1464 | CG3441-PC | 1138..1193 | 891..946 | 280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nplp1-RA | 2044 | CG3441-RA | 232..1161 | 17..946 | 4650 | 100 | Plus |
Nplp1-RC | 2695 | CG3441-RC | 232..1105 | 17..890 | 4370 | 100 | Plus |
Nplp1-RB | 2313 | CG3441-RB | 232..1105 | 17..890 | 4370 | 100 | Plus |
Nplp1-RC | 2695 | CG3441-RC | 1369..1424 | 891..946 | 280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25036845..25037531 | 205..891 | 3420 | 99.9 | Plus |
2R | 25286936 | 2R | 25036593..25036713 | 89..209 | 605 | 100 | Plus |
2R | 25286936 | 2R | 25032608..25032680 | 17..89 | 365 | 100 | Plus |
2R | 25286936 | 2R | 25039049..25039106 | 889..946 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:08:17 has no hits.
BS07814.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:59 Download gff for
BS07814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 1..930 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:41 Download gff for
BS07814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 221..1168 | 9..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:38 Download gff for
BS07814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 232..1159 | 17..944 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:00 Download gff for
BS07814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 221..1168 | 9..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:14 Download gff for
BS07814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 232..1159 | 17..944 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:14 Download gff for
BS07814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25032608..25032679 | 17..88 | 100 | -> | Plus |
2R | 25036593..25036712 | 89..208 | 100 | -> | Plus |
2R | 25036849..25037530 | 209..890 | 100 | -> | Plus |
2R | 25039051..25039104 | 891..944 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:38 Download gff for
BS07814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20920131..20920202 | 17..88 | 100 | -> | Plus |
arm_2R | 20924116..20924235 | 89..208 | 100 | -> | Plus |
arm_2R | 20924372..20925053 | 209..890 | 100 | -> | Plus |
arm_2R | 20926574..20926627 | 891..944 | 100 | | Plus |
BS07814.pep Sequence
Translation from 16 to 945
> BS07814.pep
MQAVLQSAHSSRRLMLLLSMLLNAAIQPRSIIVSATDDVANVSPCEMESL
INQLMSPSPEYQLHASALRNQLKNLLRERQLAVGEEQPLGEYPDYLEEDK
RSVAALAAQGLLNAPKRSLATLAKNGQLPTAEPGEDYGDADSGEPSEQKR
YIGSLARAGGLMTYGKRNVGTLARDFQLPIPNGKRNIATMARLQSAPSTH
RDPKRNVAAVARYNSQHGHIQRAGAEKRNLGALKSSPVHGVQQKREDEEM
LLPAAAPDYADPMQSYWWYPSYAGYADLDWNDYRRAEKRFLGRVLPPTRA
TASTHRSRL*
BS07814.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nplp1-PA | 309 | CG3441-PA | 1..309 | 1..309 | 1586 | 100 | Plus |
Nplp1-PB | 380 | CG3441-PB | 1..291 | 1..291 | 1495 | 100 | Plus |
Nplp1-PC | 487 | CG3441-PC | 1..291 | 1..291 | 1495 | 100 | Plus |