Clone BS07814 Report

Search the DGRC for BS07814

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptNplp1-RA
Protein status:BS07814.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07814.3prime Sequence

929 bp (904 high quality bases) assembled on 2006-01-06

> BS07814.3prime
ATGGTCTAGAAAGCTTTTACAAACGGCTGCGGTGGGTTGACGCAGTCGCT
CGTGTTGGTGGAAGTACCCGGCCTAGGAATCGCTTCTCTGCCCGGCGATA
ATCGTTCCAGTCGAGGTCGGCGTACCCGGCGTAGCTGGGGTACCACCAGT
AGCTCTGCATGGGATCGGCGTAGTCGGGGGCGGCCGCGGGCAACAGCATC
TCTTCATCCTCGCGCTTCTGCTGCACTCCGTGGACCGGCGAGGACTTCAG
AGCTCCCAGGTTACGTTTCTCGGCCCCAGCACGCTGGATGTGACCGTGCT
GCGAGTTGTAGCGTGCGACGGCGGCCACATTGCGCTTTGGATCTCGGTGG
GTGGAGGGAGCACTCTGCAGACGGGCCATAGTTGCGATGTTTCGCTTGCC
GTTGGGAATAGGCAGCTGGAAGTCGCGGGCCAGGGTGCCCACGTTGCGCT
TTCCATATGTCATCAATCCGCCGGCCCTGGCCAAGGAGCCGATGTAGCGC
TTCTGTTCACTCGGTTCTCCGGAGTCCGCGTCGCCGTAATCCTCTCCAGG
CTCTGCCGTGGGCAGTTGCCCGTTTTTAGCCAGAGTGGCCAAGCTTCTCT
TCGGAGCGTTAAGGAGGCCTTGGGCGGCCAGTGCGGCCACCGAACGTTTG
TCCTCCTCCAGATAATCGGGGTACTCGCCCAAAGGCTGTTCTTCGCCCAC
GGCCAACTGTCTTTCCCGAAGTAAGTTTTTCAGTTGATTGCGCAATGCGG
AGGCGTGAAGCTGGTACTCGGGACTGGGGCTCATCAGTTGATTTATAAGG
GACTCCATTTCGCACGGCGACACATTGGCGACATCATCAGTAGCACTCAC
AATAATGGACCGTGGCTGAATAGCGGCATTGAGCAGCATGGAGAGCAACA
GCATTAGCCGCCTGCTGCTGTGCGCAGAT

BS07814.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3441-PA 930 Nplp1-RA 18..930 929..17 4565 100 Minus
CG3441-PB 1143 Nplp1-RB 18..874 929..73 4285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp1-RA 2044 CG3441-RA 249..1161 929..17 4565 100 Minus
Nplp1-RC 2695 CG3441-RC 249..1105 929..73 4285 100 Minus
Nplp1-RB 2313 CG3441-RB 249..1105 929..73 4285 100 Minus
Nplp1-RC 2695 CG3441-RC 1369..1424 72..17 280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25036845..25037531 758..72 3420 99.9 Minus
2R 25286936 2R 25036593..25036713 874..754 605 100 Minus
2R 25286936 2R 25039049..25039106 74..17 290 100 Minus
2R 25286936 2R 25032625..25032680 929..874 280 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:37:31 has no hits.

BS07814.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:30 Download gff for BS07814.3prime
Subject Subject Range Query Range Percent Splice Strand
Nplp1-PA 18..930 17..929 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:49 Download gff for BS07814.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3441-PA 18..930 17..929 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:34 Download gff for BS07814.3prime
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 249..1171 9..929 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:14:39 Download gff for BS07814.3prime
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 249..1171 9..929 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:14:39 Download gff for BS07814.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 25032625..25032679 875..929 100 -> Minus
2R 25036593..25036712 755..874 100 -> Minus
2R 25036849..25037530 73..754 100 -> Minus
2R 25039051..25039116 9..72 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:34 Download gff for BS07814.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20920148..20920202 875..929 100 -> Minus
arm_2R 20924116..20924235 755..874 100 -> Minus
arm_2R 20924372..20925053 73..754 100 -> Minus
arm_2R 20926574..20926639 9..72 93   Minus

BS07814.5prime Sequence

890 bp (805 high quality bases) assembled on 2006-01-06

> BS07814.5prime
GAAGTTATCAGTCGACATGCAGGCGGTGCTCCAATCTGCGCACAGCAGCA
GGCGGCTAATGCTGTTGCTCTCCATGCTGCTCAATGCCGCTATTCAGCCA
CGGTCCATTATTGTGAGTGCTACTGATGATGTCGCCAATGTGTCGCCGTG
CGAAATGGAGTCCCTTATAAATCAACTGATGAGCCCCAGTCCCGAGTACC
AGCTTCACGCCTCCGCATTGCGCAATCAACTGAAAAACTTACTTCGGGAA
AGACAGTTGGCCGTGGGCGAAGAACAGCCTTTGGGCGAGTACCCCGATTA
TCTGGAGGAGGACAAACGTTCGGTGGCCGCACTGGCCGCCCAAGGCCTCC
TTAACGCTCCGAAGAGAAGCTTGGCCACTCTGGCTAAAAACGGGCAACTG
CCCACGGCAGAGCCTGGAGAGGATTACGGCGACGCGGACTCCGGAGAACC
GAGTGAACAGAAGCGCTACATCGGCTCCTTGGCCAGGGCCGGCGGATTGA
TGACATATGGAAAGCGCAACGTGGGCACCCTGGCCCGCGACTTCCAGCTG
CCTATTCCCAACGGCAAGCGAAACATCGCAACTATGGCCCGTCTGCAGAG
TGCTCCCTCCACCCACCGAGATCCAAAGCGCAATGTGGCCGCCGTCGCAC
GCTACAACTCGCAGCACGGTCACATCCAGCGTGCTGGGGCCGAGAAACGT
AACCTGGGAGCTCTGAAGTCCTCGCCGGTCCACGGAGTGCAGCAGAAGCG
CGAGGATGAAGAGATGCTGTTGCCCGCGGCCGCCCCCGACTACGCCGATC
CCATGCAGAGCTACTGGTGGTACCCCAGCTACGCCGGGTACGCCGACCTC
GACTGGAACGATTATCGCCGGGCAGAGAAGCGATTCCTAG

BS07814.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3441-PA 930 Nplp1-RA 1..874 17..890 4370 100 Plus
CG3441-PB 1143 Nplp1-RB 1..874 17..890 4370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp1-RC 2695 CG3441-RC 232..1105 17..890 4370 100 Plus
Nplp1-RB 2313 CG3441-RB 232..1105 17..890 4370 100 Plus
Nplp1-RA 2044 CG3441-RA 232..1105 17..890 4370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25036845..25037530 205..890 3415 99.9 Plus
2R 25286936 2R 25036593..25036713 89..209 605 100 Plus
2R 25286936 2R 25032608..25032680 17..89 365 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:36:43 has no hits.

BS07814.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:31 Download gff for BS07814.5prime
Subject Subject Range Query Range Percent Splice Strand
Nplp1-PA 1..874 17..890 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:50 Download gff for BS07814.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3441-PB 1..874 17..890 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:25 Download gff for BS07814.5prime
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 224..1105 9..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:58:26 Download gff for BS07814.5prime
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 224..1105 9..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:58:26 Download gff for BS07814.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 25032600..25032679 9..88 96 -> Plus
2R 25036593..25036712 89..208 100 -> Plus
2R 25036849..25037530 209..890 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:25 Download gff for BS07814.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20920123..20920202 9..88 96 -> Plus
arm_2R 20924116..20924235 89..208 100 -> Plus
arm_2R 20924372..20925053 209..890 100   Plus

BS07814.complete Sequence

962 bp (962 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ635998

> BS07814.complete
GAAGTTATCAGTCGACATGCAGGCGGTGCTCCAATCTGCGCACAGCAGCA
GGCGGCTAATGCTGTTGCTCTCCATGCTGCTCAATGCCGCTATTCAGCCA
CGGTCCATTATTGTGAGTGCTACTGATGATGTCGCCAATGTGTCGCCGTG
CGAAATGGAGTCCCTTATAAATCAACTGATGAGCCCCAGTCCCGAGTACC
AGCTTCACGCCTCCGCATTGCGCAATCAACTGAAAAACTTACTTCGGGAA
AGACAGTTGGCCGTGGGCGAAGAACAGCCTTTGGGCGAGTACCCCGATTA
TCTGGAGGAGGACAAACGTTCGGTGGCCGCACTGGCCGCCCAAGGCCTCC
TTAACGCTCCGAAGAGAAGCTTGGCCACTCTGGCTAAAAACGGGCAACTG
CCCACGGCAGAGCCTGGAGAGGATTACGGCGACGCGGACTCCGGAGAACC
GAGTGAACAGAAGCGCTACATCGGCTCCTTGGCCAGGGCCGGCGGATTGA
TGACATATGGAAAGCGCAACGTGGGCACCCTGGCCCGCGACTTCCAGCTG
CCTATTCCCAACGGCAAGCGAAACATCGCAACTATGGCCCGTCTGCAGAG
TGCTCCCTCCACCCACCGAGATCCAAAGCGCAATGTGGCCGCCGTCGCAC
GCTACAACTCGCAGCACGGTCACATCCAGCGTGCTGGGGCCGAGAAACGT
AACCTGGGAGCTCTGAAGTCCTCGCCGGTCCACGGAGTGCAGCAGAAGCG
CGAGGATGAAGAGATGCTGTTGCCCGCGGCCGCCCCCGACTACGCCGATC
CCATGCAGAGCTACTGGTGGTACCCCAGCTACGCCGGGTACGCCGACCTC
GACTGGAACGATTATCGCCGGGCAGAGAAGCGATTCCTAGGCCGGGTACT
TCCACCAACACGAGCGACTGCGTCAACCCACCGCAGCCGTTTGTAAAAGC
TTTCTAGACCAT

BS07814.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp1-RA 930 CG3441-PA 1..930 17..946 4650 100 Plus
Nplp1-RC 1464 CG3441-PC 1..874 17..890 4370 100 Plus
Nplp1-RB 1143 CG3441-PB 1..874 17..890 4370 100 Plus
Nplp1-RC 1464 CG3441-PC 1138..1193 891..946 280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp1-RA 2044 CG3441-RA 232..1161 17..946 4650 100 Plus
Nplp1-RC 2695 CG3441-RC 232..1105 17..890 4370 100 Plus
Nplp1-RB 2313 CG3441-RB 232..1105 17..890 4370 100 Plus
Nplp1-RC 2695 CG3441-RC 1369..1424 891..946 280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25036845..25037531 205..891 3420 99.9 Plus
2R 25286936 2R 25036593..25036713 89..209 605 100 Plus
2R 25286936 2R 25032608..25032680 17..89 365 100 Plus
2R 25286936 2R 25039049..25039106 889..946 290 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:08:17 has no hits.

BS07814.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:59 Download gff for BS07814.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 1..930 17..946 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:41 Download gff for BS07814.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 221..1168 9..954 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:38 Download gff for BS07814.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 232..1159 17..944 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:00 Download gff for BS07814.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 221..1168 9..954 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:14 Download gff for BS07814.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 232..1159 17..944 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:14 Download gff for BS07814.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25032608..25032679 17..88 100 -> Plus
2R 25036593..25036712 89..208 100 -> Plus
2R 25036849..25037530 209..890 100 -> Plus
2R 25039051..25039104 891..944 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:38 Download gff for BS07814.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20920131..20920202 17..88 100 -> Plus
arm_2R 20924116..20924235 89..208 100 -> Plus
arm_2R 20924372..20925053 209..890 100 -> Plus
arm_2R 20926574..20926627 891..944 100   Plus

BS07814.pep Sequence

Translation from 16 to 945

> BS07814.pep
MQAVLQSAHSSRRLMLLLSMLLNAAIQPRSIIVSATDDVANVSPCEMESL
INQLMSPSPEYQLHASALRNQLKNLLRERQLAVGEEQPLGEYPDYLEEDK
RSVAALAAQGLLNAPKRSLATLAKNGQLPTAEPGEDYGDADSGEPSEQKR
YIGSLARAGGLMTYGKRNVGTLARDFQLPIPNGKRNIATMARLQSAPSTH
RDPKRNVAAVARYNSQHGHIQRAGAEKRNLGALKSSPVHGVQQKREDEEM
LLPAAAPDYADPMQSYWWYPSYAGYADLDWNDYRRAEKRFLGRVLPPTRA
TASTHRSRL*

BS07814.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp1-PA 309 CG3441-PA 1..309 1..309 1586 100 Plus
Nplp1-PB 380 CG3441-PB 1..291 1..291 1495 100 Plus
Nplp1-PC 487 CG3441-PC 1..291 1..291 1495 100 Plus