Clone Sequence Records
BS07816.3prime Sequence
868 bp (811 high quality bases) assembled on 2006-01-06
> BS07816.3prime
ATGGTCTAGAAAGCTTCTAAAGAGGATTGCAGCGCTGGTCCTGCGGGTAG
AGGACATCTCCAGGACGGCACCTAAAGGCCTCCAGGAACTCCGGCGAGTT
GCGCAGTGTGGCGTGAGTCACCTGCCGCTTACGGTCCTGCTGCAGGGCGC
CCAGCTCGGAGCGGCAGTCGACGAGCAGGCTGGTAACGAAAAAGAGCCTC
TGTAGGGACATCTTCGAGCTACCGGCGGCCAGAACCGCGTCGACTCTCTC
CACTAGCCCCGCCTGGGTGGCAAGCCACTGACCGTAAGCACTAAGCGCTT
GCCTTTGGGCGAGCAGGCTCAGAAGCAGATCGATGGCGTTCGTCTGCTTA
CCTACGCACTGTTGGAAGATGGCAAAGCGCCTCTCGGAGTCCGAGCTCCG
CCAGGCTCCTTGCGTACGAGAGCTGCTACCTGCGGCTACAAGGCTTCGCG
AAAAGAACTCCCCCAGTAGGAGGTAGTTGAGCGGCGTGCTCAGATTGTGC
TGCCCTAGGAACGCATTTACTGGAGCGAACATTTGGGCGTAGCGACGCAC
CTGCTGGGCGGAATGGGAGGCCAAACGTCGCGTGCGCTGAAACTTGCGCA
GCTTCTCCAGGTTGCGGTAGAGGCTCCGCCGACCCAACAAAATCGAGTGG
TATGCCGCGTCCAATCGCTCATCTCCATTCAGCGTAGTGTGCATTATGTT
ACCCAAAAACTGTCTCGAGCTCTGCCTAGAGATCTCATCGATCCACACAC
TGCCGCCTAGCTGGTCTGTGTAGGCCTTTCCCAGCTCCGAGTACATTTGG
GCCAGTTCGACTCGATTTGCCGTAACACGTTGCACTACGTGGGCGTAAAG
GTCCCCGGCGTAGGTTTC
BS07816.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9780-PA | 1779 | CG9780-RA | 928..1779 | 868..17 | 4260 | 100 | Minus |
| CG9780-PB | 1977 | CG9780-RB | 928..1763 | 868..33 | 4180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9780-RA | 2182 | CG9780-RA | 1121..1972 | 868..17 | 4260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4292484..4293335 | 17..868 | 4260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:24:25 has no hits.
BS07816.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:35 Download gff for
BS07816.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-PA | 928..1779 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:54 Download gff for
BS07816.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-PA | 928..1779 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:11:54 Download gff for
BS07816.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 1121..1972 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:30 Download gff for
BS07816.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 1121..1972 | 17..868 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:30 Download gff for
BS07816.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4292484..4293335 | 17..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:11:54 Download gff for
BS07816.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 118206..119057 | 17..868 | 100 | | Plus |
BS07816.5prime Sequence
949 bp (822 high quality bases) assembled on 2006-01-06
> BS07816.5prime
GAAGTTATCAGTCGACATGATTTCAAAAGCACTGGCCGTCCTGTGGATAG
CTGGCATCGCCTACGGCCAGGACGATCTGCTCAGGGTGGAAACCGAATTG
TTGAGCTTCTCTCACAACCTAGAGCCGTATCTCGACACCAGCAAGCAGCC
CTGCCAGGACTTCTACGGTTATGTCTGCTCGCACAGCGCCAACCTCAGCG
AGACTGGCAGGCAGCGATTCCAAAGCTTGCTTAAGGAAACGGACGTGGCG
CAGCTGATGGACATGGAACTCCAACTGATAAACTTCTTCAAGTCTTGCGA
GAGCGGGCGTGGCGTAGAGGCGCTCAAGGGATCTCAATTGTATAGGCAGA
GTGGGGGCTGGCCTAGCTTGGAACCGAACAAAGTCAATGCCAGTCAGCGG
ACTAACCAAACCCAAAGATGGCTGGGACTTCTTGGGTACTTCCACGAAGT
GGGCGCGCCCTATTTCTTCGAGACGTCGGTCACCATGCAGTCCAACAAGC
GACTTGTGGTACTGCAACCCGACGGCACGCGCCGAAACACTCTAAGAAAA
TTCGAGCAGCGGGTGGGCGAAGTCCTGCAAAGCTTCGGGATAGAACAGAG
CCGCGCCCACGTGACCGCCCTCGAAGTGCTCAGCTTGGAGCGCAGTAGAC
GGGACATTGTAAAGGCGGATCACGTCGAGGATCAAGTGCAGTTTTCCTAT
GGAAACTTTAAGCGCATCGTCTTCGGAAACGCCTCGCTGATCAGACTGGA
CTGGGATGGCTACTTCCGCAAGTTGCTAGGCGGCAAAACGCCACAGGCCA
GCGACACCATTGTAGTCAAACAACTGGCCAGACTGGTTGAGTACTTCGCG
CTGCTCCAAACACAAGCATGGTTCGACTTCTTATTGGATATGGACGGACT
ACTTGATGGACATCGTAGATGCAGACTGCCACCAATTATCGGAAAACTA
BS07816.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9780-PA | 1779 | CG9780-RA | 1..844 | 17..860 | 4195 | 99.8 | Plus |
| CG9780-PB | 1977 | CG9780-RB | 1..844 | 17..860 | 4195 | 99.8 | Plus |
| CG9780-PA | 1779 | CG9780-RA | 869..931 | 883..945 | 315 | 100 | Plus |
| CG9780-PB | 1977 | CG9780-RB | 869..931 | 883..945 | 315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9780-RA | 2182 | CG9780-RA | 194..1128 | 17..949 | 4595 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4293753..4294647 | 909..17 | 4360 | 99.7 | Minus |
| 3R | 32079331 | 3R | 4293328..4293368 | 949..909 | 190 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:55:32 has no hits.
BS07816.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:36 Download gff for
BS07816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-PA | 1..934 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:18:56 Download gff for
BS07816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-PB | 1..934 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:35 Download gff for
BS07816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 186..1127 | 9..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:46 Download gff for
BS07816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 186..1127 | 9..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:46 Download gff for
BS07816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4293329..4293367 | 910..948 | 97 | <- | Minus |
| 3R | 4293753..4294655 | 9..909 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:35 Download gff for
BS07816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 119051..119089 | 910..948 | 97 | <- | Minus |
| arm_3R | 119475..120377 | 9..909 | 99 | | Minus |
BS07816.complete Sequence
1811 bp assembled on 2008-01-03
GenBank Submission: FJ636000
> BS07816.complete
GAAGTTATCAGTCGACATGATTTCAAAAGCACTGGCCGTCCTGTGGATAG
CTGGCATCGCCTACGGCCAGGACGATCTGCTCAGGGTGGAAACCGAATTG
TTGAGCTTCTCTCACAACCTAGAGCCGTATCTCGACACCAGCAAGCAGCC
CTGCCAGGACTTCTACGGTTATGTCTGCTCGCACAGCGCCAACCTCAGCG
AGACTGGCAGGCAGCGATTCCAAAGCTTGCTTAAGGAAACGGACGTGGCG
CAGCTGATGGACATGGAACTCCAACTGATAAACTTCTTCAAGTCTTGCGA
GAGCGGGCGTGGCGTAGAGGCGCTCAAGGGATCTCAATTGTATAGGCAGA
GTGGGGGCTGGCCTAGCTTGGAACCGAACAAAGTCAATGCCAGTCAGCGG
ACTAACCAAACCCAAAGATGGCTGGGACTTCTTGGGTACTTCCACGAAGT
GGGCGCGCCCTATTTCTTCGAGACGTCGGTCACCATGCAGTCCAACAAGC
GACTTGTGGTACTGCAACCCGACGGCACGCGCCGAAACACTCTAAGAAAA
TTCGAGCAGCGGGTGGGCGAAGTCCTGCAAAGCTTCGGGATAGAACAGAG
CCGCGCCCACGTGACCGCCCTCGAAGTGCTCAGCTTGGAGCGCAGTAGAC
GGGACATTGTAAAGGCGGATCACGTCGAGGATCAAGTGCAGTTTTCCTAT
GGAAACTTTAAGCGCATCGTCTTCGGAAACGCCTCGCTGATCAGACTGGA
CTGGGATGGCTACTTCCGCAAGTTGCTAGGCGGCAAAACGCCACAGGCCA
GCGACACCATTGTAGTCAAACAACTGCCCAGACTGGTTGAGTACTTCGCG
CTGCTCCAAAACACAAGCATGGTTCGACTTCTTAATTGGATATGGACGGA
CTACTTGATGGACATCGTAGATGCAGACTGCCACCAATTATCGGAAACCT
ACGCCGGGGACCTTTACGCCCACGTAGTGCAACGTGTTACGGCAAATCGA
GTCGAACTGGCCCAAATGTACTCGGAGCTGGGAAAGGCCTACACAGACCA
GCTAGGCGGCAGTGTGTGGATCGATGAGATCTCTAGGCAGAGCTCGAGAC
AGTTTTTGGGTAACATAATGCACACTACGCTGAATGGAGATGAGCGATTG
GACGCGGCATACCACTCGATTTTGTTGGGTCGGCGGAGCCTCTACCGCAA
CCTGGAGAAGCTGCGCAAGTTTCAGCGCACGCGACGTTTGGCCTCCCATT
CCGCCCAGCAGGTGCGTCGCTACGCCCAAATGTTCGCTCCAGTAAATGCG
TTCCTAGGGCAGCACAATCTGAGCACGCCGCTCAACTACCTCCTACTGGG
GGAGTTCTTTTCGCGAAGCCTTGTAGCCGCAGGTAGCAGCTCTCGTACGC
AAGGAGCCTGGCGGAGCTCGGACTCCGAGAGGCGCTTTGCCATCTTCCAA
CAGTGCGTAGGTAAGCAGACGAACGCCATCGATCTGCTTCTGAGCCTGCT
CGCCCAAAGGCAAGCGCTTAGTGCTTACGGTCAGTGGCTTGCCACCCAGG
CGGGGCTAGTGGAGAGAGTCGACGCGGTTCTGGCCGCCGGTAGCTCGAAG
ATGTCCCTACAGAGGCTCTTTTTCGTTACCAGCCTGCTCGTCGACTGCCG
CTCCGAGCTGGGCGCCCTGCAGCAGGACCGTAAGCGGCAGGTGACTCACG
CCACACTGCGCAACTCGCCGGAGTTCCTGGAGGCCTTTAGGTGCCGTCCT
GGAGATGTCCTCTACCCGCAGGACCAGCGCTGCAATCCTCTTTAGAAGCT
TTCTAGACCAT
BS07816.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9780-RA | 1779 | CG9780-PA | 1..1779 | 17..1795 | 8895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9780-RA | 2182 | CG9780-RA | 194..1972 | 17..1795 | 8895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4293753..4294647 | 911..17 | 4475 | 100 | Minus |
| 3R | 32079331 | 3R | 4292484..4293368 | 1795..911 | 4425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:04:05 has no hits.
BS07816.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:15 Download gff for
BS07816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 1..1779 | 17..1795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:08 Download gff for
BS07816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 190..1968 | 17..1795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:42 Download gff for
BS07816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 194..1972 | 17..1795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:15 Download gff for
BS07816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 182..1968 | 9..1795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:34 Download gff for
BS07816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 194..1972 | 17..1795 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:34 Download gff for
BS07816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4292484..4293367 | 912..1795 | 100 | <- | Minus |
| 3R | 4293753..4294647 | 17..911 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:42 Download gff for
BS07816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 118206..119089 | 912..1795 | 100 | <- | Minus |
| arm_3R | 119475..120369 | 17..911 | 100 | | Minus |
BS07816.pep Sequence
Translation from 16 to 1794
> BS07816.pep
MISKALAVLWIAGIAYGQDDLLRVETELLSFSHNLEPYLDTSKQPCQDFY
GYVCSHSANLSETGRQRFQSLLKETDVAQLMDMELQLINFFKSCESGRGV
EALKGSQLYRQSGGWPSLEPNKVNASQRTNQTQRWLGLLGYFHEVGAPYF
FETSVTMQSNKRLVVLQPDGTRRNTLRKFEQRVGEVLQSFGIEQSRAHVT
ALEVLSLERSRRDIVKADHVEDQVQFSYGNFKRIVFGNASLIRLDWDGYF
RKLLGGKTPQASDTIVVKQLPRLVEYFALLQNTSMVRLLNWIWTDYLMDI
VDADCHQLSETYAGDLYAHVVQRVTANRVELAQMYSELGKAYTDQLGGSV
WIDEISRQSSRQFLGNIMHTTLNGDERLDAAYHSILLGRRSLYRNLEKLR
KFQRTRRLASHSAQQVRRYAQMFAPVNAFLGQHNLSTPLNYLLLGEFFSR
SLVAAGSSSRTQGAWRSSDSERRFAIFQQCVGKQTNAIDLLLSLLAQRQA
LSAYGQWLATQAGLVERVDAVLAAGSSKMSLQRLFFVTSLLVDCRSELGA
LQQDRKRQVTHATLRNSPEFLEAFRCRPGDVLYPQDQRCNPL*
BS07816.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9780-PA | 592 | CG9780-PA | 1..592 | 1..592 | 3038 | 100 | Plus |
