Clone Sequence Records
BS07824.3prime Sequence
936 bp (835 high quality bases) assembled on 2006-01-06
> BS07824.3prime
ATGGTCTAGAAAGCTTTCAAACCCGTCCGGCTGGTGCCAACTGCTTGTCG
CTGAAACGCAGAATGCGCGTCAGCATGGTGGTTATGCAGGGTATCTGCTT
CTGCTGGTGCATCTCCGGAGTGTCCGGGGTGCAGGACTCAAAGTCCACGG
CCACCCGCTGGCACACGAATGTGAGCAGGGTCAGGATGTCCAGCCGCTTG
CCATTGGCCGCCAGTTCGGCGCACAGGCTCTGCATGAACCAGCTGCCGCG
GGTGGTGTTGCGCCACGAATAGAATCCAGGAACCGTCGAGTAGGCGATCA
GAAAGTCGGCGTGCACTGGAATCTTGTAGCTCATCGAGGAGTCGCCATCG
GTTTCCGTCTGAGAACGCTGCATGGTCACTCCGCCATCCAATCTGTCGCC
CTGGCAGGCCTGTATGAAGAACAACTTGGGTTTGCCGGCTAGCGAGGGGC
AGTGATTGGCCGTGAAGAAGCTCCAGATGTTATCCAGCTTGTACTGTGTG
TCCTTGGCGTAGATGTAGCCCATCTCGCCGTGCGACAGGATGGCGACCAG
GATGCAATCACTATCGCTGTGATTCTGCGACGCTGCATACTCGATTGTCC
TCAAAATGTCCTTGTAGCGGCAGTCCTTGTACACGGTCACTTCGAAGTCC
AGCTGCTTGAGCACCCGAGTCAGATTCTCGCAGTCCACATTGGTTCCCGC
GCGAGACTTCAAGGTGGGCACCTCGAAGTGCTCATGGTTGAAGATCAGTG
CCATTCCGCGGTTCTTGTGGCGCATGTTGTACTCGGCTGCATGGCGGTCG
GTGACCATTTTGGCTACATTCTTACGGTAGCTGGACGAGGGTGAGCTGTA
CCCGTTGGCCAGCTGCCCAATGGCTCCGCTGCCGTAAGGATGCGAGGATC
CTGCGACCAGGCCGCTGCTACCCGGCTCCTCGGGAT
BS07824.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7788-PA | 1020 | Ice-RA | 113..1020 | 924..17 | 4540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drice-RA | 1927 | CG7788-RA | 342..1260 | 936..17 | 4560 | 99.8 | Minus |
| Dcp-1-RA | 1749 | CG5370-RA | 854..1359 | 548..43 | 595 | 75.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29800010..29800917 | 924..17 | 4540 | 100 | Minus |
| 2R | 25286936 | 2R | 23552592..23552855 | 548..285 | 405 | 76.9 | Minus |
| 2R | 25286936 | 2R | 23553019..23553157 | 181..43 | 230 | 77.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:27:07 has no hits.
BS07824.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:48 Download gff for
BS07824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice-PA | 102..1020 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:11 Download gff for
BS07824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7788-PA | 102..1020 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:20 Download gff for
BS07824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice-RA | 342..1265 | 12..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:29:02 Download gff for
BS07824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drice-RA | 342..1265 | 12..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:29:02 Download gff for
BS07824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29799999..29800922 | 12..936 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:20 Download gff for
BS07824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25625721..25626644 | 12..936 | 99 | | Minus |
BS07824.5prime Sequence
910 bp (841 high quality bases) assembled on 2006-01-06
> BS07824.5prime
GAAGTTATCAGTCGACATGGACGCCACTAACAATGGAGAATCCGCCGACC
AGGTGGGCATCAGGGTGGGCAATCCGGAGCAGCCCAACGATCACACAGAT
GCCCTGGGCTCCGTGGGATCCGGAGGAGCGGGTAGCAGCGGCCTGGTCGC
AGGATCCTCGCATCCTTACGGCAGCGGAGCCATTGGGCAGCTGGCCAACG
GGTACAGCTCACCCTCGTCCAGCTACCGTAAGAATGTAGCCAAAATGGTC
ACCGACCGCCATGCAGCCGAGTACAACATGCGCCACAAGAACCGCGGAAT
GGCACTGATCTTCAACCATGAGCACTTCGAGGTGCCCACCTTGAAGTCTC
GCGCGGGAACCAATGTGGACTGCGAGAATCTGACTCGGGTGCTCAAGCAG
CTGGACTTCGAAGTGACCGTGTACAAGGACTGCCGCTACAAGGACATTTT
GAGGACAATCGAGTATGCAGCGTCGCAGAATCACAGCGATAGTGATTGCA
TCCTGGTCGCCATCCTGTCGCACGGCGAGATGGGCTACATCTACGCCAAG
GACACACAGTACAAGCTGGATAACATCTGGAGCTTCTTCACGGCCAATCA
CTGCCCCTCGCTAGCCGGCAAACCCAAGTTGTTCTTCATACAGGCCTGCC
AGGGCGACAGATTGGATGGCGGAGTGACCATGCAGCGTTCTCAGACGGAA
ACCGATGGCGACTCCTCGATGAGCTACAAGATTCCAGTGCACGCCGACTT
TCTGATCGCCTACTCGACGGTTCCTGGATTCTATTCGTGGCGCAACACCA
CCCGCGGCAGCTGGTTCATGCAGAGCCTGTGCGCCGAACTGGCGGCCAAT
GGCAAGCGGCTGGACATCCTGACCCTGCTCACATTCGTGTGCCAGCGGGT
GGGCGTGGAC
BS07824.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7788-PA | 1020 | Ice-RA | 1..894 | 17..910 | 4445 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drice-RA | 1927 | CG7788-RA | 240..1134 | 16..910 | 4460 | 99.9 | Plus |
| Dcp-1-RA | 1749 | CG5370-RA | 854..1171 | 505..822 | 435 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29799897..29800791 | 16..910 | 4460 | 99.9 | Plus |
| 2R | 25286936 | 2R | 23552592..23552855 | 505..768 | 405 | 76.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:30:14 has no hits.
BS07824.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:49 Download gff for
BS07824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:12 Download gff for
BS07824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7788-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:59:54 Download gff for
BS07824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice-RA | 240..1134 | 16..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:57 Download gff for
BS07824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drice-RA | 240..1134 | 16..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:57 Download gff for
BS07824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29799897..29800791 | 16..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:59:54 Download gff for
BS07824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25625619..25626513 | 16..910 | 99 | | Plus |
BS07824.complete Sequence
1052 bp (1052 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636001
> BS07824.complete
GAAGTTATCAGTCGACATGGACGCCACTAACAATGGAGAATCCGCCGACC
AGGTGGGCATCAGGGTGGGCAATCCGGAGCAGCCCAACGATCACACAGAT
GCCCTGGGCTCCGTGGGATCCGGAGGAGCGGGTAGCAGCGGCCTGGTCGC
AGGATCCTCGCATCCTTACGGCAGCGGAGCCATTGGGCAGCTGGCCAACG
GGTACAGCTCACCCTCGTCCAGCTACCGTAAGAATGTAGCCAAAATGGTC
ACCGACCGCCATGCAGCCGAGTACAACATGCGCCACAAGAACCGCGGAAT
GGCACTGATCTTCAACCATGAGCACTTCGAGGTGCCCACCTTGAAGTCTC
GCGCGGGAACCAATGTGGACTGCGAGAATCTGACTCGGGTGCTCAAGCAG
CTGGACTTCGAAGTGACCGTGTACAAGGACTGCCGCTACAAGGACATTTT
GAGGACAATCGAGTATGCAGCGTCGCAGAATCACAGCGATAGTGATTGCA
TCCTGGTCGCCATCCTGTCGCACGGCGAGATGGGCTACATCTACGCCAAG
GACACACAGTACAAGCTGGATAACATCTGGAGCTTCTTCACGGCCAATCA
CTGCCCCTCGCTAGCCGGCAAACCCAAGTTGTTCTTCATACAGGCCTGCC
AGGGCGACAGATTGGATGGCGGAGTGACCATGCAGCGTTCTCAGACGGAA
ACCGATGGCGACTCCTCGATGAGCTACAAGATTCCAGTGCACGCCGACTT
TCTGATCGCCTACTCGACGGTTCCTGGATTCTATTCGTGGCGCAACACCA
CCCGCGGCAGCTGGTTCATGCAGAGCCTGTGCGCCGAACTGGCGGCCAAT
GGCAAGCGGCTGGACATCCTGACCCTGCTCACATTCGTGTGCCAGCGGGT
GGCCGTGGACTTTGAGTCCTGCACCCCGGACACTCCGGAGATGCACCAGC
AGAAGCAGATACCCTGCATAACCACCATGCTGACGCGCATTCTGCGTTTC
AGCGACAAGCAGTTGGCACCAGCCGGACGGGTTTGAAAGCTTTCTAGACC
AT
BS07824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drice-RA | 1020 | CG7788-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
| Dcp-1-RA | 972 | CG5370-PA | 444..949 | 505..1010 | 595 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drice-RA | 1927 | CG7788-RA | 240..1260 | 16..1036 | 5105 | 100 | Plus |
| Dcp-1-RA | 1749 | CG5370-RA | 854..1359 | 505..1010 | 595 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29799897..29800917 | 16..1036 | 5105 | 100 | Plus |
| 2R | 25286936 | 2R | 23552592..23552855 | 505..768 | 405 | 76.9 | Plus |
| 2R | 25286936 | 2R | 23553019..23553157 | 872..1010 | 230 | 77.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:50:29 has no hits.
BS07824.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:48 Download gff for
BS07824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice-RA | 1..1020 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:26 Download gff for
BS07824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice-RA | 245..1270 | 16..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:39 Download gff for
BS07824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice-RA | 241..1259 | 17..1035 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:48 Download gff for
BS07824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice-RA | 245..1270 | 16..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:53 Download gff for
BS07824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drice-RA | 241..1259 | 17..1035 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:53 Download gff for
BS07824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29799898..29800916 | 17..1035 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:39 Download gff for
BS07824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25625620..25626638 | 17..1035 | 100 | | Plus |
BS07824.pep Sequence
Translation from 16 to 1035
> BS07824.pep
MDATNNGESADQVGIRVGNPEQPNDHTDALGSVGSGGAGSSGLVAGSSHP
YGSGAIGQLANGYSSPSSSYRKNVAKMVTDRHAAEYNMRHKNRGMALIFN
HEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEY
AASQNHSDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTANHCPSLA
GKPKLFFIQACQGDRLDGGVTMQRSQTETDGDSSMSYKIPVHADFLIAYS
TVPGFYSWRNTTRGSWFMQSLCAELAANGKRLDILTLLTFVCQRVAVDFE
SCTPDTPEMHQQKQIPCITTMLTRILRFSDKQLAPAGRV*
BS07824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drice-PA | 339 | CG7788-PA | 1..339 | 1..339 | 1795 | 100 | Plus |
| Dcp-1-PA | 323 | CG5370-PA | 57..316 | 72..331 | 980 | 67.7 | Plus |
| Decay-PA | 308 | CG14902-PA | 56..305 | 94..331 | 405 | 35.6 | Plus |
| Strica-PB | 527 | CG7863-PB | 317..525 | 98..330 | 232 | 32.5 | Plus |
| Strica-PA | 527 | CG7863-PA | 317..525 | 98..330 | 232 | 32.5 | Plus |
