Clone Sequence Records
BS07829.3prime Sequence
945 bp (770 high quality bases) assembled on 2006-01-06
> BS07829.3prime
ATGGTCTAGAAAGCTTTCAGAGATGCTTCTTTTCCTTCATCGGCGAATCC
TTGACGTTTTCTGCCTGCTGGACCGCAGCGAACGTCGTGCGCGAAAAGGG
ATCCACACTCGCATCCCTGAAGGTCTTCTTTTGGGTCGGCAAACTCTTGG
TCGGCGCCGATGTAGCTGGTGTGGGTGTGGAGGACCCGGATTGGGCGCTA
TTCAAATGCGTCTGGCTCCTCTGACCACCCAATCCTCCGATCAGCGACTG
GTGAGGACTAAAGAAAGCGGCCGATGCTGTGCCATTGCGCAAACATTGTT
CAGATTCTCCGCCAAACATGTGAGCCGATGAATTGCCGGACAGCGGGGCA
TCCAGCCAGCAGCGCTTCACGGATATGGCCAATTGATCCTTGGCCTTGAA
GATCTGCTCAATAATCCCATCGATGAGGGAGCCAAGTGTATCGTATTCAT
TGGGCACCATTCCATCGACACTGCTCTCGAAGTAGCTAAACATGGGAAAC
CAAACACGCGTCCTCTTGGAGTCGCTTTGCATGAGAGCCCTGTTATTTGC
TAGAGTATGATAGTACAGAAACAGACGTGAGGTGATATAGAAGGCCACAA
ACACATCGATGGAGTAGTGCTCGTGGGCAGCCAGGATGAAGAATATGCCA
AACATGTTGAGCAGCCAGGTCAGCGTGTGCAGGAAGTACAGATTCCGCGG
CGTGTATTCTGTGATAAAGAAGTTGAGCAGGGTCAAGGCCACCGTGTGAC
CACTAAACATATAATCGCCGCAGGTCCGCACTCCCTGAATGGACATGCCC
AGGCCGCTCCAGATGCGATAGGCTCGTGACATGCGGATAATCAAGGCGCC
CACCATGTCCACATTGGGATCATCGATGGCAAAGTCCTTCTGGCTGCACT
GCAGATGCGGTCCCGGTACGCTCAGCGACGTGATCAACATGGTGA
BS07829.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32380-PA | 1803 | SMSr-RA | 875..1803 | 945..17 | 4620 | 99.8 | Minus |
| CG32380-PB | 1155 | SMSr-RB | 227..1155 | 945..17 | 4620 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-RA | 2591 | CG32380-RA | 1119..2047 | 945..17 | 4630 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7374594..7375116 | 17..539 | 2615 | 100 | Plus |
| 3L | 28110227 | 3L | 7375405..7375644 | 706..945 | 1185 | 99.6 | Plus |
| 3L | 28110227 | 3L | 7375179..7375346 | 538..705 | 840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:14:58 has no hits.
BS07829.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:24:59 Download gff for
BS07829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-PB | 228..1155 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:24 Download gff for
BS07829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32380-PB | 228..1155 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:03:21 Download gff for
BS07829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 1120..2051 | 12..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:14:23 Download gff for
BS07829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 1120..2051 | 12..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:14:23 Download gff for
BS07829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7374590..7375115 | 12..538 | 99 | <- | Plus |
| 3L | 7375180..7375346 | 539..705 | 100 | <- | Plus |
| 3L | 7375405..7375643 | 706..944 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:03:21 Download gff for
BS07829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7368280..7368446 | 539..705 | 100 | <- | Plus |
| arm_3L | 7368505..7368743 | 706..944 | 99 | | Plus |
| arm_3L | 7367690..7368215 | 12..538 | 99 | <- | Plus |
BS07829.5prime Sequence
833 bp (750 high quality bases) assembled on 2006-01-06
> BS07829.5prime
GAAGTTATCAGTCGACATGTGCGACGGTGAAATTGGCGATCCGGTGACTC
AGCCACGTTCCGAGGGCGGTGGATTGGTCACAATGGATCAGGAGACCCGG
ACGCACTACCTCGACGCGGCGACAGATAAGCACCTGACCAATGGATCGCC
AGATCCAGAGCCCGTGGATCCGCTACTCGTGGCCCAGTGGTCCATCGAGA
ATGTGACCAGTTGGGCCACCTGCATGGAGCACTTTTCGAGAACACTGCTC
GACTGCCTGCGCCAGGAGGCCATCGACGGCGAGGTGCTGCTCTCCCTCAC
CGAGGAGGATGTACGTGATATGCGCTACAAACTGGGCTACAAACTCACCT
TCGGCGAGCTCAAGAAATTCTGGATAGCCGTGCTCAAGCTGCAGCTACTG
GTGAAGAACAGCTCTGCGGAATCCGTAATACTGGGCATCGAGTGCCATGG
GAACGGGAACTCGGTATACATGCCACTAGCCAGCACCGGCTGCGGTCCAC
CGTCCTCATCCACGTGCCCCTGTCCGCAGGCCGAATGCCCCAGCTATGTG
TCCGATTGCGATACCTATTTGCGCATGGGCGGACGCTATGTTCCGCCGGA
ATACTTCAAGACCGCCATGAGCTTAGGCTACTCGTTCGTTGTCACCTGGA
TAACATCGTTAACAATGGTTATTGTGCACGAGCGGGTTCCGGATATGAAG
CGCTATCCGCCGCTGCCGGACATCTTCCTGGACAACGTGCCGCATATTCC
GTGGGCCTTTAATATGTGCGAAATAACCGGCTCACTATTGTTCACCATTT
GGGTGGTCGTGCTAACCTTCCACAAGTATAGAT
BS07829.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32380-PA | 1803 | SMSr-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
| CG32380-PB | 1155 | SMSr-RB | 1..169 | 665..833 | 845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-RA | 2591 | CG32380-RA | 245..1061 | 17..833 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7380620..7381230 | 627..17 | 3055 | 100 | Minus |
| 3L | 28110227 | 3L | 7375702..7375910 | 833..625 | 1045 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:58:16 has no hits.
BS07829.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:00 Download gff for
BS07829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:26 Download gff for
BS07829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32380-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:23:18 Download gff for
BS07829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 239..1061 | 10..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:28 Download gff for
BS07829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 239..1061 | 10..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:28 Download gff for
BS07829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7375702..7375908 | 627..833 | 100 | <- | Minus |
| 3L | 7380621..7381236 | 10..626 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:23:18 Download gff for
BS07829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7368802..7369008 | 627..833 | 100 | <- | Minus |
| arm_3L | 7373721..7374336 | 10..626 | 99 | | Minus |
BS07829.complete Sequence
1835 bp assembled on 2008-01-03
GenBank Submission: FJ636003
> BS07829.complete
GAAGTTATCAGTCGACATGTGCGACGGTGAAATTGGCGATCCGGTGACTC
AGCCACGTTCCGAGGGCGGTGGATTGGTCACAATGGATCAGGAGACCCGG
ACGCACTACCTCGACGCGGCGACAGATAAGCACCTGACCAATGGATCGCC
AGATCCAGAGCCCGTGGATCCGCTACTCGTGGCCCAGTGGTCCATCGAGA
ATGTGACCAGTTGGGCCACCTGCATGGAGCACTTTTCGAGAACACTGCTC
GACTGCCTGCGCCAGGAGGCCATCGACGGCGAGGTGCTGCTCTCCCTCAC
CGAGGAGGATGTACGTGATATGCGCTACAAACTGGGCTACAAACTCACCT
TCGGCGAGCTCAAGAAATTCTGGATAGCCGTGCTCAAGCTGCAGCTACTG
GTGAAGAACAGCTCTGCGGAATCCGTAATACTGGGCATCGAGTGCCATGG
GAACGGGAACTCGGTATACATGCCACTAGCCAGCACCGGCTGCGGTCCAC
CGTCCTCATCCACGTGCCCCTGTCCGCAGGCCGAATGCCCCAGCTATGTG
TCCGATTGCGATACCTATTTGCGCATGGGCGGACGCTATGTTCCGCCGGA
ATACTTCAAGACCGCCATGAGCTTAGGCTACTCGTTCGTTGTCACCTGGA
TAACATCGTTAACAATGGTTATTGTGCACGAGCGGGTTCCGGATATGAAG
CGCTATCCGCCGCTGCCGGACATCTTCCTGGACAACGTGCCGCATATTCC
GTGGGCCTTTAATATGTGCGAAATAACCGGCTCACTATTGTTCACCATTT
GGGTGGTCGTGCTAACCTTCCACAAGTATAGATTGGTCCTACTGAGGCGA
TTCTTTGCTCTGGCGGGCACGGTTTTCCTGCTGCGCTGCGTCACCATGTT
GATCACGTCGCTGAGCGTACCGGGAACGCATCTGCAGTGCAGCCAGAAGG
ACTTTGCCATCGATGATCCCAATGTGGACATGGTGGGCGCCTTGATTATC
CGCATGTCACGAGCCTATCGCATCTGGAGCGGCCTGGGCATGTCCATTCA
GGGAGTGCGGACCTGCGGCGATTATATGTTTAGTGGTCACACGGTGGCCT
TGACCCTGCTCAACTTCTTTATCACAGAATACACGCCGCGGAATCTGTAC
TTCCTGCACACGCTGACCTGGCTGCTCAACATGTTTGGCATATTCTTCAT
CCTGGCTGCCCACGAGCACTACTCCATCGATGTGTTTGTGGCCTTCTATA
TCACCTCACGTCTGTTTCTGTACTATCATACTCTAGCAAATAACAGGGCT
CTCATGCAAAGCGACTCCAAGAGGACGCGTGTTTGGTTTCCCATGTTTAG
CTACTTCGAGAGCAGTGTCGATGGAATGGTGCCCAATGAATACGATACAC
TTGGCTCCCTCATCGATGGGATTATTGAGCAGATCTTCAAGGCCAAGGAT
CAATTGGCCATATCCGTGAAGCGCTGCTGGCTGGATGCCCCGCTGTCCGG
CAATTCATCGGCTCACATGTTTGGCGGAGAATCTGAACAATGTTTGCGCA
ATGGCACAGCATCGGCCGCTTTCTTTAGTCCTCACCAGTCGCTGATCGGA
GGATTGGGTGGTCAGAGGAGCCAGACGCATTTGAATAGCGCCCAATCCGG
GTCCTCCACACCCACACCAGCTACATCGGCGCCGACCAAGAGTTTGCCGA
CCCAAAAGAAGACCTTCAGGGATGCGAGTGTGGATCCCTTTTCGCGCACG
ACGTTCGCTGCGGTCCAGCAGGCAGAAAACGTCAAGGATTCGCCGATGAA
GGAAAAGAAGCATCTCTGAAAGCTTTCTAGACCAT
BS07829.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-RA | 1803 | CG32380-PA | 1..1803 | 17..1819 | 9015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-RA | 2591 | CG32380-RA | 245..2047 | 17..1819 | 9015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7380620..7381230 | 627..17 | 3055 | 100 | Minus |
| 3L | 28110227 | 3L | 7374594..7375116 | 1819..1297 | 2615 | 100 | Minus |
| 3L | 28110227 | 3L | 7375405..7375910 | 1130..625 | 2530 | 100 | Minus |
| 3L | 28110227 | 3L | 7375179..7375346 | 1298..1131 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:32:56 has no hits.
BS07829.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:17 Download gff for
BS07829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 1..1803 | 17..1819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:14 Download gff for
BS07829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 288..2089 | 17..1818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:45 Download gff for
BS07829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 245..2046 | 17..1818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:18 Download gff for
BS07829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 282..2094 | 10..1824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:47 Download gff for
BS07829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 245..2046 | 17..1818 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:47 Download gff for
BS07829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7374595..7375115 | 1298..1818 | 100 | <- | Minus |
| 3L | 7375180..7375346 | 1131..1297 | 100 | <- | Minus |
| 3L | 7375405..7375908 | 627..1130 | 100 | <- | Minus |
| 3L | 7380621..7381230 | 17..626 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:45 Download gff for
BS07829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7367695..7368215 | 1298..1818 | 100 | <- | Minus |
| arm_3L | 7368280..7368446 | 1131..1297 | 100 | <- | Minus |
| arm_3L | 7368505..7369008 | 627..1130 | 100 | <- | Minus |
| arm_3L | 7373721..7374330 | 17..626 | 100 | | Minus |
BS07829.pep Sequence
Translation from 16 to 1818
> BS07829.pep
MCDGEIGDPVTQPRSEGGGLVTMDQETRTHYLDAATDKHLTNGSPDPEPV
DPLLVAQWSIENVTSWATCMEHFSRTLLDCLRQEAIDGEVLLSLTEEDVR
DMRYKLGYKLTFGELKKFWIAVLKLQLLVKNSSAESVILGIECHGNGNSV
YMPLASTGCGPPSSSTCPCPQAECPSYVSDCDTYLRMGGRYVPPEYFKTA
MSLGYSFVVTWITSLTMVIVHERVPDMKRYPPLPDIFLDNVPHIPWAFNM
CEITGSLLFTIWVVVLTFHKYRLVLLRRFFALAGTVFLLRCVTMLITSLS
VPGTHLQCSQKDFAIDDPNVDMVGALIIRMSRAYRIWSGLGMSIQGVRTC
GDYMFSGHTVALTLLNFFITEYTPRNLYFLHTLTWLLNMFGIFFILAAHE
HYSIDVFVAFYITSRLFLYYHTLANNRALMQSDSKRTRVWFPMFSYFESS
VDGMVPNEYDTLGSLIDGIIEQIFKAKDQLAISVKRCWLDAPLSGNSSAH
MFGGESEQCLRNGTASAAFFSPHQSLIGGLGGQRSQTHLNSAQSGSSTPT
PATSAPTKSLPTQKKTFRDASVDPFSRTTFAAVQQAENVKDSPMKEKKHL
*
BS07829.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-PA | 600 | CG32380-PA | 1..600 | 1..600 | 3180 | 100 | Plus |
