Clone Sequence Records
BS07830.3prime Sequence
886 bp (757 high quality bases) assembled on 2006-01-06
> BS07830.3prime
ATGGTCTAGAAAGCTTTTATGATAATTTAGGCACTCTTTTGGACAAACGC
ACTCGCACTCCATGTTTGGGAATCAAGGCAATGCCACTGTTCTCGAACTC
TATTTCGCTCCTGCTCATCACCTCGACATTGAAGTTCTGTAGGATCTTGA
TGATGGCCAGTTTGGAGTTAATACGACCCATCCTCTGGGCAATGCAAATC
CTGGGACCCTCGCCAAACGGCATGAATGCAGTGGGATTATAATTGCGACT
CTCCTCCGAGAAGCGTTCGGGATCATAGGTCTCGGGATCCGGGAAGTACT
CTGCATCATGGTGAATGCCGTACAGGGAGATCACAACTGGCGTTCCCTTC
GGAATGACGTGGTTGGTGTCGGGTACTGTGTAGTCCTGGGTGCATTCACG
ATTCAGAATGGGAAGACCCGGATATTTGCGAATGGTTTCCTGCACACACA
GGTCCAAAAATTCCATCTTGTTCAGGGAATCGTAGGTGATCTTTCCGTCG
TTTTTGGCCAGTGTCTCGTCCACTTCATCCTGCAGGCGCTTCAGTAGCTC
TGGATACTGAGCCAGCTCGTAGATGGTAAAGGCTGCAGTCGATCCGGTGG
TCTCCTGACCAGCGATGTAGAATATAAAAGCCTGAGCGGTGATGGCCTCC
AAGGATATGGTTTTAATATGACCATCGGGTGTCTTCTGAATGCTAAAGGA
CTTCTCGTCATTCTCGTCTATCTTGCCGGTATTCCTCAGCTGAATGAGCA
ACTGCAACAGATCCTTGCGCACTATTCCATGTTTCTCGCGATACTCAACG
GTTTCCTTGACAATCTGCAACATGGCCAGGCCAACTGGATTTTTTAAAAC
CTATTCTGAATAGGAACTGTGCTATCGAGGGCACCA
BS07830.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12800-PA | 1548 | Cyp6d4-RA | 721..1548 | 844..17 | 4140 | 100 | Minus |
CG12800-PA | 1548 | Cyp6d4-RA | 680..725 | 886..841 | 230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6d4-RA | 1872 | CG12800-RA | 757..1627 | 886..15 | 4335 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22699404..22700062 | 673..15 | 3295 | 100 | Minus |
3R | 32079331 | 3R | 22699142..22699346 | 876..671 | 980 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:17:44 has no hits.
BS07830.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:01 Download gff for
BS07830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12800-PA | 681..1548 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:27 Download gff for
BS07830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12800-PA | 681..1548 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:22:51 Download gff for
BS07830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d4-RA | 758..1630 | 11..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:50:32 Download gff for
BS07830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d4-RA | 758..1630 | 11..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:50:32 Download gff for
BS07830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22699142..22699344 | 673..876 | 99 | -> | Minus |
3R | 22699405..22700065 | 11..672 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:22:51 Download gff for
BS07830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18524864..18525066 | 673..876 | 99 | -> | Minus |
arm_3R | 18525127..18525787 | 11..672 | 99 | | Minus |
BS07830.5prime Sequence
778 bp (652 high quality bases) assembled on 2006-01-06
> BS07830.5prime
GAAGTTATCAGTCGACATGTTTTCGCTGATTTTATTGGCCGTAACGCTAT
TGACTTTGGCGTGGTTCTATCTGAAGCGCCACTATGAGTACTGGGAGCGA
CGCGGATTTCCATTTGAAAAACACTCCGGGATTCCATTCGGTTGCTTGGA
CAGTGTGTGGCGGCAGGAGAAGAGCATGGGCTTGGCCATCTACGATGTGT
ATGTGAAGAGTAAAGAGCGCGTCTTGGGCATTTATTTGCTCTTCCGTCCG
GCTGTTTTGATCAGAGACGCCGATCTGGCTCGCCGTGTTCTGGCCCAGGA
TTTCGCCAGTTTCCACGATCGCGGCGTTTACGTTGATGAGGAACGGGATC
CCCTGTCGGCCAATATCTTCTCGCTTCGCGGTCAGAGCTGGCGATCGATG
AGGCACATGTTGTCGCCATGTTTCACATCCGGAAAGTTGAAGAGCATGTT
CAGCACATCCGAGGATATTGGTGACAAGATGGTGGCCCATCTGCAAAAGG
AGCTGCCGGAGGAGGGCTTCAAGGAGGTGGACATAAAGAAAGTGATGCAA
AACTATGCCATTGACATTATAGCCTCGACTATCTTTGGCTTGGATGTAAA
TAGCTTCGAAAATCCTGATAACAAGTTCCGTAAACTGGTGTCGTTGGCCA
GAGCCAATAATAGATTCAATGCCATGTTCGGCATGATGATCTTCCTGGTG
CCCTCGATAGCACAGTTCCTATTCAGAATAGGTTTTAAAAATCCAGTTGG
CCTGGCCATGTTGCAGATTGTCAAGGAA
BS07830.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12800-PA | 1548 | Cyp6d4-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:22:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6d4-RA | 1872 | CG12800-RA | 72..839 | 12..778 | 3815 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:22:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22698396..22699085 | 17..706 | 3450 | 100 | Plus |
3R | 32079331 | 3R | 22699142..22699214 | 706..778 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:22:42 has no hits.
BS07830.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:02 Download gff for
BS07830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12800-PA | 1..760 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:29 Download gff for
BS07830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12800-PA | 1..760 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:08:17 Download gff for
BS07830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d4-RA | 68..839 | 6..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:38:23 Download gff for
BS07830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d4-RA | 68..839 | 6..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:38:23 Download gff for
BS07830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22698386..22699084 | 6..705 | 99 | -> | Plus |
3R | 22699142..22699214 | 706..778 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:08:17 Download gff for
BS07830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18524108..18524806 | 6..705 | 99 | -> | Plus |
arm_3R | 18524864..18524936 | 706..778 | 100 | | Plus |
BS07830.complete Sequence
1580 bp assembled on 2007-10-17
GenBank Submission: FJ636004
> BS07830.complete
GAAGTTATCAGTCGACATGTTTTCGCTGATTTTATTGGCCGTAACGCTAT
TGACTTTGGCGTGGTTCTATCTGAAGCGCCACTATGAGTACTGGGAGCGA
CGCGGATTTCCATTTGAAAAACACTCCGGGATTCCATTCGGTTGCTTGGA
CAGTGTGTGGCGGCAGGAGAAGAGCATGGGCTTGGCCATCTACGATGTGT
ATGTGAAGAGTAAAGAGCGCGTCTTGGGCATTTATTTGCTCTTCCGTCCG
GCTGTTTTGATCAGAGACGCCGATCTGGCTCGCCGTGTTCTGGCCCAGGA
TTTCGCCAGTTTCCACGATCGCGGCGTTTACGTTGATGAGGAACGGGATC
CCCTGTCGGCCAATATCTTCTCGCTTCGCGGTCAGAGCTGGCGATCGATG
AGGCACATGTTGTCGCCATGTTTCACATCCGGAAAGTTGAAGAGCATGTT
CAGCACATCCGAGGATATTGGTGACAAGATGGTGGCCCATCTGCAAAAGG
AGCTGCCGGAGGAGGGCTTCAAGGAGGTGGACATAAAGAAAGTGATGCAA
AACTATGCCATTGACATTATAGCCTCGACTATCTTTGGCTTGGATGTAAA
TAGCTTCGAAAATCCTGATAACAAGTTCCGTAAACTGGTGTCGTTGGCCA
GAGCCAATAATAGATTCAATGCCATGTTCGGCATGATGATCTTCCTGGTG
CCCTCGATAGCACAGTTCCTATTCAGAATAGGTTTTAAAAATCCAGTTGG
CCTGGCCATGTTGCAGATTGTCAAGGAAACCGTTGAGTATCGCGAGAAAC
ATGGAATAGTGCGCAAGGATCTGTTGCAGTTGCTCATTCAGCTGAGGAAT
ACCGGCAAGATAGACGAGAATGACGAGAAGTCCTTTAGCATTCAGAAGAC
ACCCGATGGTCATATTAAAACCATATCCTTGGAGGCCATCACCGCTCAGG
CTTTTATATTCTACATCGCTGGTCAGGAGACCACCGGATCGACTGCAGCC
TTTACCATCTACGAGCTGGCTCAGTATCCAGAGCTACTGAAGCGCCTGCA
GGATGAAGTGGACGAGACACTGGCCAAAAACGACGGAAAGATCACCTACG
ATTCCCTGAACAAGATGGAATTTTTGGACCTGTGTGTGCAGGAAACCATT
CGCAAATATCCGGGTCTTCCCATTCTGAATCGTGAATGCACCCAGGACTA
CACAGTACCCGACACCAACCACGTCATTCCGAAGGGAACGCCAGTTGTGA
TCTCCCTGTACGGCATTCACCATGATGCAGAGTACTTCCCGGATCCCGAG
ACCTATGATCCCGAACGCTTCTCGGAGGAGAGTCGCAATTATAATCCCAC
TGCATTCATGCCGTTTGGCGAGGGTCCCAGGATTTGCATTGCCCAGAGGA
TGGGTCGTATTAACTCCAAACTGGCCATCATCAAGATCCTACAGAACTTC
AATGTCGAGGTGATGAGCAGGAGCGAAATAGAGTTCGAGAACAGTGGCAT
TGCCTTGATTCCCAAACATGGAGTGCGAGTGCGTTTGTCCAAAAGAGTGC
CTAAATTATCATAAAAGCTTTCTAGACCAT
BS07830.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6d4-RA | 1548 | CG12800-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6d4-RA | 1872 | CG12800-RA | 78..1627 | 17..1566 | 7750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22698396..22699085 | 17..706 | 3450 | 100 | Plus |
3R | 32079331 | 3R | 22699404..22700062 | 908..1566 | 3295 | 100 | Plus |
3R | 32079331 | 3R | 22699142..22699346 | 706..910 | 1025 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:56:56 has no hits.
BS07830.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:19 Download gff for
BS07830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d4-RA | 1..1548 | 17..1564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:37:53 Download gff for
BS07830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d4-RA | 62..1624 | 6..1570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:06 Download gff for
BS07830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d4-RA | 85..1623 | 24..1562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:10 Download gff for
BS07830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d4-RA | 79..1617 | 24..1562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:29 Download gff for
BS07830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6d4-RA | 85..1623 | 24..1562 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:29 Download gff for
BS07830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22699142..22699344 | 706..908 | 100 | -> | Plus |
3R | 22698403..22699084 | 24..705 | 100 | -> | Plus |
3R | 22699405..22700058 | 909..1562 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:06 Download gff for
BS07830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18524125..18524806 | 24..705 | 100 | -> | Plus |
arm_3R | 18524864..18525066 | 706..908 | 100 | -> | Plus |
arm_3R | 18525127..18525780 | 909..1562 | 100 | | Plus |
BS07830.pep Sequence
Translation from 16 to 1563
> BS07830.pep
MFSLILLAVTLLTLAWFYLKRHYEYWERRGFPFEKHSGIPFGCLDSVWRQ
EKSMGLAIYDVYVKSKERVLGIYLLFRPAVLIRDADLARRVLAQDFASFH
DRGVYVDEERDPLSANIFSLRGQSWRSMRHMLSPCFTSGKLKSMFSTSED
IGDKMVAHLQKELPEEGFKEVDIKKVMQNYAIDIIASTIFGLDVNSFENP
DNKFRKLVSLARANNRFNAMFGMMIFLVPSIAQFLFRIGFKNPVGLAMLQ
IVKETVEYREKHGIVRKDLLQLLIQLRNTGKIDENDEKSFSIQKTPDGHI
KTISLEAITAQAFIFYIAGQETTGSTAAFTIYELAQYPELLKRLQDEVDE
TLAKNDGKITYDSLNKMEFLDLCVQETIRKYPGLPILNRECTQDYTVPDT
NHVIPKGTPVVISLYGIHHDAEYFPDPETYDPERFSEESRNYNPTAFMPF
GEGPRICIAQRMGRINSKLAIIKILQNFNVEVMSRSEIEFENSGIALIPK
HGVRVRLSKRVPKLS*
BS07830.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6d4-PA | 515 | CG12800-PA | 1..515 | 1..515 | 2663 | 100 | Plus |
Cyp6d2-PA | 512 | CG4373-PA | 4..511 | 5..510 | 1398 | 50.4 | Plus |
Cyp6d5-PA | 508 | CG3050-PA | 4..505 | 5..508 | 1388 | 51.7 | Plus |
Cyp6a14-PE | 509 | CG8687-PE | 2..508 | 1..509 | 812 | 34.5 | Plus |
Cyp6a14-PC | 509 | CG8687-PC | 2..508 | 1..509 | 812 | 34.5 | Plus |