Clone BS07830 Report

Search the DGRC for BS07830

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCyp6d4-RA
Protein status:BS07830.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07830.3prime Sequence

886 bp (757 high quality bases) assembled on 2006-01-06

> BS07830.3prime
ATGGTCTAGAAAGCTTTTATGATAATTTAGGCACTCTTTTGGACAAACGC
ACTCGCACTCCATGTTTGGGAATCAAGGCAATGCCACTGTTCTCGAACTC
TATTTCGCTCCTGCTCATCACCTCGACATTGAAGTTCTGTAGGATCTTGA
TGATGGCCAGTTTGGAGTTAATACGACCCATCCTCTGGGCAATGCAAATC
CTGGGACCCTCGCCAAACGGCATGAATGCAGTGGGATTATAATTGCGACT
CTCCTCCGAGAAGCGTTCGGGATCATAGGTCTCGGGATCCGGGAAGTACT
CTGCATCATGGTGAATGCCGTACAGGGAGATCACAACTGGCGTTCCCTTC
GGAATGACGTGGTTGGTGTCGGGTACTGTGTAGTCCTGGGTGCATTCACG
ATTCAGAATGGGAAGACCCGGATATTTGCGAATGGTTTCCTGCACACACA
GGTCCAAAAATTCCATCTTGTTCAGGGAATCGTAGGTGATCTTTCCGTCG
TTTTTGGCCAGTGTCTCGTCCACTTCATCCTGCAGGCGCTTCAGTAGCTC
TGGATACTGAGCCAGCTCGTAGATGGTAAAGGCTGCAGTCGATCCGGTGG
TCTCCTGACCAGCGATGTAGAATATAAAAGCCTGAGCGGTGATGGCCTCC
AAGGATATGGTTTTAATATGACCATCGGGTGTCTTCTGAATGCTAAAGGA
CTTCTCGTCATTCTCGTCTATCTTGCCGGTATTCCTCAGCTGAATGAGCA
ACTGCAACAGATCCTTGCGCACTATTCCATGTTTCTCGCGATACTCAACG
GTTTCCTTGACAATCTGCAACATGGCCAGGCCAACTGGATTTTTTAAAAC
CTATTCTGAATAGGAACTGTGCTATCGAGGGCACCA

BS07830.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12800-PA 1548 Cyp6d4-RA 721..1548 844..17 4140 100 Minus
CG12800-PA 1548 Cyp6d4-RA 680..725 886..841 230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6d4-RA 1872 CG12800-RA 757..1627 886..15 4335 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22699404..22700062 673..15 3295 100 Minus
3R 32079331 3R 22699142..22699346 876..671 980 99.5 Minus
Blast to na_te.dros performed on 2015-02-01 08:17:44 has no hits.

BS07830.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:01 Download gff for BS07830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12800-PA 681..1548 17..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:27 Download gff for BS07830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12800-PA 681..1548 17..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:22:51 Download gff for BS07830.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 758..1630 11..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:50:32 Download gff for BS07830.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 758..1630 11..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:50:32 Download gff for BS07830.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22699142..22699344 673..876 99 -> Minus
3R 22699405..22700065 11..672 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:22:51 Download gff for BS07830.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18524864..18525066 673..876 99 -> Minus
arm_3R 18525127..18525787 11..672 99   Minus

BS07830.5prime Sequence

778 bp (652 high quality bases) assembled on 2006-01-06

> BS07830.5prime
GAAGTTATCAGTCGACATGTTTTCGCTGATTTTATTGGCCGTAACGCTAT
TGACTTTGGCGTGGTTCTATCTGAAGCGCCACTATGAGTACTGGGAGCGA
CGCGGATTTCCATTTGAAAAACACTCCGGGATTCCATTCGGTTGCTTGGA
CAGTGTGTGGCGGCAGGAGAAGAGCATGGGCTTGGCCATCTACGATGTGT
ATGTGAAGAGTAAAGAGCGCGTCTTGGGCATTTATTTGCTCTTCCGTCCG
GCTGTTTTGATCAGAGACGCCGATCTGGCTCGCCGTGTTCTGGCCCAGGA
TTTCGCCAGTTTCCACGATCGCGGCGTTTACGTTGATGAGGAACGGGATC
CCCTGTCGGCCAATATCTTCTCGCTTCGCGGTCAGAGCTGGCGATCGATG
AGGCACATGTTGTCGCCATGTTTCACATCCGGAAAGTTGAAGAGCATGTT
CAGCACATCCGAGGATATTGGTGACAAGATGGTGGCCCATCTGCAAAAGG
AGCTGCCGGAGGAGGGCTTCAAGGAGGTGGACATAAAGAAAGTGATGCAA
AACTATGCCATTGACATTATAGCCTCGACTATCTTTGGCTTGGATGTAAA
TAGCTTCGAAAATCCTGATAACAAGTTCCGTAAACTGGTGTCGTTGGCCA
GAGCCAATAATAGATTCAATGCCATGTTCGGCATGATGATCTTCCTGGTG
CCCTCGATAGCACAGTTCCTATTCAGAATAGGTTTTAAAAATCCAGTTGG
CCTGGCCATGTTGCAGATTGTCAAGGAA

BS07830.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12800-PA 1548 Cyp6d4-RA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6d4-RA 1872 CG12800-RA 72..839 12..778 3815 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22698396..22699085 17..706 3450 100 Plus
3R 32079331 3R 22699142..22699214 706..778 365 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:22:42 has no hits.

BS07830.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:02 Download gff for BS07830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12800-PA 1..760 17..776 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:29 Download gff for BS07830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12800-PA 1..760 17..776 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:08:17 Download gff for BS07830.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 68..839 6..778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:38:23 Download gff for BS07830.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 68..839 6..778 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:38:23 Download gff for BS07830.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22698386..22699084 6..705 99 -> Plus
3R 22699142..22699214 706..778 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:08:17 Download gff for BS07830.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18524108..18524806 6..705 99 -> Plus
arm_3R 18524864..18524936 706..778 100   Plus

BS07830.complete Sequence

1580 bp assembled on 2007-10-17

GenBank Submission: FJ636004

> BS07830.complete
GAAGTTATCAGTCGACATGTTTTCGCTGATTTTATTGGCCGTAACGCTAT
TGACTTTGGCGTGGTTCTATCTGAAGCGCCACTATGAGTACTGGGAGCGA
CGCGGATTTCCATTTGAAAAACACTCCGGGATTCCATTCGGTTGCTTGGA
CAGTGTGTGGCGGCAGGAGAAGAGCATGGGCTTGGCCATCTACGATGTGT
ATGTGAAGAGTAAAGAGCGCGTCTTGGGCATTTATTTGCTCTTCCGTCCG
GCTGTTTTGATCAGAGACGCCGATCTGGCTCGCCGTGTTCTGGCCCAGGA
TTTCGCCAGTTTCCACGATCGCGGCGTTTACGTTGATGAGGAACGGGATC
CCCTGTCGGCCAATATCTTCTCGCTTCGCGGTCAGAGCTGGCGATCGATG
AGGCACATGTTGTCGCCATGTTTCACATCCGGAAAGTTGAAGAGCATGTT
CAGCACATCCGAGGATATTGGTGACAAGATGGTGGCCCATCTGCAAAAGG
AGCTGCCGGAGGAGGGCTTCAAGGAGGTGGACATAAAGAAAGTGATGCAA
AACTATGCCATTGACATTATAGCCTCGACTATCTTTGGCTTGGATGTAAA
TAGCTTCGAAAATCCTGATAACAAGTTCCGTAAACTGGTGTCGTTGGCCA
GAGCCAATAATAGATTCAATGCCATGTTCGGCATGATGATCTTCCTGGTG
CCCTCGATAGCACAGTTCCTATTCAGAATAGGTTTTAAAAATCCAGTTGG
CCTGGCCATGTTGCAGATTGTCAAGGAAACCGTTGAGTATCGCGAGAAAC
ATGGAATAGTGCGCAAGGATCTGTTGCAGTTGCTCATTCAGCTGAGGAAT
ACCGGCAAGATAGACGAGAATGACGAGAAGTCCTTTAGCATTCAGAAGAC
ACCCGATGGTCATATTAAAACCATATCCTTGGAGGCCATCACCGCTCAGG
CTTTTATATTCTACATCGCTGGTCAGGAGACCACCGGATCGACTGCAGCC
TTTACCATCTACGAGCTGGCTCAGTATCCAGAGCTACTGAAGCGCCTGCA
GGATGAAGTGGACGAGACACTGGCCAAAAACGACGGAAAGATCACCTACG
ATTCCCTGAACAAGATGGAATTTTTGGACCTGTGTGTGCAGGAAACCATT
CGCAAATATCCGGGTCTTCCCATTCTGAATCGTGAATGCACCCAGGACTA
CACAGTACCCGACACCAACCACGTCATTCCGAAGGGAACGCCAGTTGTGA
TCTCCCTGTACGGCATTCACCATGATGCAGAGTACTTCCCGGATCCCGAG
ACCTATGATCCCGAACGCTTCTCGGAGGAGAGTCGCAATTATAATCCCAC
TGCATTCATGCCGTTTGGCGAGGGTCCCAGGATTTGCATTGCCCAGAGGA
TGGGTCGTATTAACTCCAAACTGGCCATCATCAAGATCCTACAGAACTTC
AATGTCGAGGTGATGAGCAGGAGCGAAATAGAGTTCGAGAACAGTGGCAT
TGCCTTGATTCCCAAACATGGAGTGCGAGTGCGTTTGTCCAAAAGAGTGC
CTAAATTATCATAAAAGCTTTCTAGACCAT

BS07830.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6d4-RA 1548 CG12800-PA 1..1548 17..1564 7740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6d4-RA 1872 CG12800-RA 78..1627 17..1566 7750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22698396..22699085 17..706 3450 100 Plus
3R 32079331 3R 22699404..22700062 908..1566 3295 100 Plus
3R 32079331 3R 22699142..22699346 706..910 1025 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:56:56 has no hits.

BS07830.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:19 Download gff for BS07830.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 1..1548 17..1564 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:37:53 Download gff for BS07830.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 62..1624 6..1570 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:06 Download gff for BS07830.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 85..1623 24..1562 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:10 Download gff for BS07830.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 79..1617 24..1562 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:29 Download gff for BS07830.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 85..1623 24..1562 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:29 Download gff for BS07830.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22699142..22699344 706..908 100 -> Plus
3R 22698403..22699084 24..705 100 -> Plus
3R 22699405..22700058 909..1562 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:06 Download gff for BS07830.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18524125..18524806 24..705 100 -> Plus
arm_3R 18524864..18525066 706..908 100 -> Plus
arm_3R 18525127..18525780 909..1562 100   Plus

BS07830.pep Sequence

Translation from 16 to 1563

> BS07830.pep
MFSLILLAVTLLTLAWFYLKRHYEYWERRGFPFEKHSGIPFGCLDSVWRQ
EKSMGLAIYDVYVKSKERVLGIYLLFRPAVLIRDADLARRVLAQDFASFH
DRGVYVDEERDPLSANIFSLRGQSWRSMRHMLSPCFTSGKLKSMFSTSED
IGDKMVAHLQKELPEEGFKEVDIKKVMQNYAIDIIASTIFGLDVNSFENP
DNKFRKLVSLARANNRFNAMFGMMIFLVPSIAQFLFRIGFKNPVGLAMLQ
IVKETVEYREKHGIVRKDLLQLLIQLRNTGKIDENDEKSFSIQKTPDGHI
KTISLEAITAQAFIFYIAGQETTGSTAAFTIYELAQYPELLKRLQDEVDE
TLAKNDGKITYDSLNKMEFLDLCVQETIRKYPGLPILNRECTQDYTVPDT
NHVIPKGTPVVISLYGIHHDAEYFPDPETYDPERFSEESRNYNPTAFMPF
GEGPRICIAQRMGRINSKLAIIKILQNFNVEVMSRSEIEFENSGIALIPK
HGVRVRLSKRVPKLS*

BS07830.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6d4-PA 515 CG12800-PA 1..515 1..515 2663 100 Plus
Cyp6d2-PA 512 CG4373-PA 4..511 5..510 1398 50.4 Plus
Cyp6d5-PA 508 CG3050-PA 4..505 5..508 1388 51.7 Plus
Cyp6a14-PE 509 CG8687-PE 2..508 1..509 812 34.5 Plus
Cyp6a14-PC 509 CG8687-PC 2..508 1..509 812 34.5 Plus