Clone Sequence Records
BS07831.3prime Sequence
875 bp (789 high quality bases) assembled on 2006-01-06
> BS07831.3prime
ATGGTCTAGAAAGCTTCTAATACAATCGACACTGCCTTCGCCTGGGCGAG
GGGCCACAGGAGAAGGCCTCCCGAAATGGCTCAAAGTGGGCAACTGCATC
GTTGACCCTCTTCCTATCGCTGCCATGATCGTGCGCCTGCAAGAGCTCCT
TATCGGAGCAGAAGAATTGGGCAAAGTTATGAAAGAACTGCTGCTTCTGA
GTGACCAACTCCTCGGCACTTCGATTCCGCTTATGATCCGTTTGTGCGGT
GTCAAAGTAGGCGGAATAGGCCAGTTCCAAGCCACTGGCGTCCGCGAACT
TTTCATACCGCTTCCTCCCGAATCTTCTGCGCAAACAGCCAAGCTCCTGC
TGGAATCGCGGATTCCTATCAAGCTCCCTGTCCACGGCGCTACTTCCCAC
TCCGTGCGAGGAGAAGGTCATGCCCTCGGAATCAAAGCCGTGCGAGAGCT
CGTGGCCCAGGATGAAGCCCAGTGCACTGTAGGTAAGTATCGACGGCTGG
CCATGTGTGTAGAACGGCGGTTCCAGGAGCGATAGTGGCACAATTAGCAT
ATTCTGTTTGACTATGTAGAACGCAGAGGCATAGGTGCCATACCCACGCA
CTTGGGTGGGATACAAATCGCTCTTGGATATTCGGCTTGGAATCAACTGG
CGGCCGAAGACTATGGCCCATAGTTGGGCGTACTTCTTGTGGGATCTGGA
GTGATTAAGGCCGATATGTAGATTTCCAAAATAATCGCTAGCATTCATGT
GAACATCCCTGTAGTGCCTTTCGATGCGTCGCACCATGGATTGGGCCGAA
GAATTTCTGGGCAGGATGCTCAATCGCAGCCGCATCCTTTTCAATTTGCC
CAAAAGAAAGTGCTGTGTGCTGCGA
BS07831.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3239-PB | 1515 | CG3239-RB | 657..1515 | 875..17 | 4295 | 100 | Minus |
| CG3239-PA | 1683 | CG3239-RA | 825..1683 | 875..17 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frma-RG | 2975 | CG3239-RG | 985..1843 | 875..17 | 4295 | 100 | Minus |
| frma-RF | 1930 | CG3239-RF | 985..1843 | 875..17 | 4295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5494146..5495004 | 17..875 | 4295 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 2574..2627 | 137..191 | 110 | 69.1 | Plus |
BS07831.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:04 Download gff for
BS07831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-PB | 658..1515 | 17..874 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:30 Download gff for
BS07831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-PA | 826..1683 | 17..874 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:11:24 Download gff for
BS07831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-RC | 964..1821 | 17..874 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:03 Download gff for
BS07831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frma-RF | 986..1843 | 17..874 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:03 Download gff for
BS07831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5494146..5495003 | 17..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:11:24 Download gff for
BS07831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5388179..5389036 | 17..874 | 100 | | Plus |
BS07831.5prime Sequence
805 bp (801 high quality bases) assembled on 2006-01-06
> BS07831.5prime
GAAGTTATCAGTCGACATGGACCGACTGGACTACAATTATCAGGAGAAGT
TGGCAGACTTGCTGGATAATGAAAGAGAGGACGACGAGCCACATTTTCTG
CAGCAGTTGAGGAACTTTTACACCGCCTGTCGAAAACCTTTGAGCCAGGA
TCAAGTCCTGCGCATACTGGAGCATCTGATCGTAATGGAGAATATCCAAA
ATGAAGAGCTGTCCGTCGGCTTGACTGCCGCCTTTCGTCTTCAAGTACTC
ATAGATCTAAATGACTCCAATACGTATGACATTTGGAAGCAGTTGATGTC
CCACAGGAAGCATTGGGATCCAAATACAACGAACAGGGAACCCTTAACTC
GCGAAATGTTTGACAAGCTATGGGCCAGCCTGCCAAAAATTCCCTTTCCG
TTTAAGGAGTACTATTGGCGCGAATTAAGCGAGCTGGAAGAGAAAATAAT
GAGCTATGGAAGCGAGGACGATGGCTTTGATAGCGGTGATTTGGTTACGC
GGATACCACCCTTTTGGATGATGCCCTGGCCAAATGGGAATATTACCTAT
GAAAATCTTTCCCAGATGGCCCATTGGCTGGATATAAAAGCCAATGAGTT
CATTCTCACATATATCTATATGCGATTAAAGCTAGTTGCGGAAGGAGTCT
CAACGGAATCCTGGCATATAGATCGCGACCAGTGCGCCGAGCAGTCCAGA
CAGATCCTCAGTCATCCTGCTGCATGGTTGGTAGAGAAGAATCATCCCAG
GCTCAAGGAGGAGCCAGTGCTGCAGGACATTTTCGCGGAGCTGAAGCAGC
GCTTT
BS07831.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3239-PA | 1683 | CG3239-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
| CG3239-PB | 1515 | CG3239-RB | 1..621 | 185..805 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frma-RG | 2975 | CG3239-RG | 161..949 | 17..805 | 3945 | 100 | Plus |
| frma-RF | 1930 | CG3239-RF | 161..949 | 17..805 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5495040..5495772 | 805..73 | 3665 | 100 | Minus |
| X | 23542271 | X | 5495837..5495892 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:33:02 has no hits.
BS07831.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:05 Download gff for
BS07831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:31 Download gff for
BS07831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:00:22 Download gff for
BS07831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-RC | 133..927 | 10..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:27 Download gff for
BS07831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frma-RF | 155..949 | 10..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:27 Download gff for
BS07831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5495040..5495772 | 73..805 | 100 | <- | Minus |
| X | 5495837..5495898 | 10..72 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:00:22 Download gff for
BS07831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5389073..5389805 | 73..805 | 100 | <- | Minus |
| arm_X | 5389870..5389931 | 10..72 | 93 | | Minus |
BS07831.complete Sequence
1715 bp assembled on 2008-08-14
GenBank Submission: FJ638808
> BS07831.complete
GAAGTTATCAGTCGACATGGACCGACTGGACTACAATTATCAGGAGAAGT
TGGCAGACTTGCTGGATAATGAAAGAGAGGACGACGAGCCACATTTTCTG
CAGCAGTTGAGGAACTTTTACACCGCCTGTCGAAAACCTTTGAGCCAGGA
TCAAGTCCTGCGCATACTGGAGCATCTGATCGTAATGGAGAATATCCAAA
ATGAAGAGCTGTCCGTCGGCTTGACTGCCGCCTTTCGTCTTCAAGTACTC
ATAGATCTAAATGACTCCAATACGTATGACATTTGGAAGCAGTTGATGTC
CCACAGGAAGCATTGGGATCCAAATACAACGAACAGGGAACCCTTAACTC
GCGAAATGTTTGACAAGCTATGGGCCAGCCTGCCAAAAATTCCCTTTCCG
TTTAAGGAGTACTATTGGCGCGAATTAAGCGAGCTGGAAGAGAAAATAAT
GAGCTATGGAAGCGAGGACGATGGCTTTGATAGCGGTGATTTGGTTACGC
GGATACCACCCTTTTGGATGATGCCCTGGCCAAATGGGAATATTACCTAT
GAAAATCTTTCCCAGATGGCCCATTGGCTGGATATAAAAGCCAATGAGTT
CATTCTCACATATATCTATATGCGATTAAAGCTAGTTGCGGAAGGAGTCT
CAACGGAATCCTGGCATATAGATCGCGACCAGTGCGCCGAGCAGTCCAGA
CAGATCCTCAGTCATCCTGCTGCATGGTTGGTAGAGAAGAATCATCCCAG
GCTCAAGGAGGAGCCAGTGCTGCAGGACATTTTCGCGGAGCTGAAGCAGC
GCTTTGGCCAAAAGCTTCTGGCGAACAGGAATAACTTTACTCGCAGCACA
CAGCACTTTCTTTTGGGCAAATTGAAAAGGATGCGGCTGCGATTGAGCAT
CCTGCCCAGAAATTCTTCGGCCCAATCCATGGTGCGACGCATCGAAAGGC
ACTACAGGGATGTTCACATGAATGCTAGCGATTATTTTGGAAATCTACAT
ATCGGCCTTAATCACTCCAGATCCCACAAGAAGTACGCCCAACTATGGGC
CATAGTCTTCGGCCGCCAGTTGATTCCAAGCCGAATATCCAAGAGCGATT
TGTATCCCACCCAAGTGCGTGGGTATGGCACCTATGCCTCTGCGTTCTAC
ATAGTCAAACAGAATATGCTAATTGTGCCACTATCGCTCCTGGAACCGCC
GTTCTACACACATGGCCAGCCGTCGATACTTACCTACAGTGCACTGGGCT
TCATCCTGGGCCACGAGCTCTCGCACGGCTTTGATTCCGAGGGCATGACC
TTCTCCTCGCACGGAGTGGGAAGTAGCGCCGTGGACAGGGAGCTTGATAG
GAATCCGCGATTCCAGCAGGAGCTTGGCTGTTTGCGCAGAAGATTCGGGA
GGAAGCGGTATGAAAAGTTCGCGGACGCCAGTGGCTTGGAACTGGCCTAT
TCCGCCTACTTTGACACCGCACAAACGGATCATAAGCGGAATCGAAGTGC
CGAGGAGTTGGTCACTCAGAAGCAGCAGTTCTTTCATAACTTTGCCCAAT
TCTTCTGCTCCGATAAGGAGCTCTTGCAGGCGCACGATCATGGCAGCGAT
AGGAAGAGGGTCAACGATGCAGTTGCCCACTTTGAGCCATTTCGGGAGGC
CTTCTCCTGTGGCCCCTCGCCCAGGCGAAGGCAGTGTCGATTGTATTAGA
AGCTTTCTAGACCAT
BS07831.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frma-RG | 1836 | CG3239-PG | 154..1836 | 17..1699 | 8415 | 100 | Plus |
| frma-RF | 1836 | CG3239-PF | 154..1836 | 17..1699 | 8415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frma-RG | 2975 | CG3239-RG | 161..1843 | 17..1699 | 8415 | 100 | Plus |
| frma-RF | 1930 | CG3239-RF | 161..1843 | 17..1699 | 8415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5494146..5495772 | 1699..73 | 8135 | 100 | Minus |
| X | 23542271 | X | 5495837..5495892 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:30:31 has no hits.
BS07831.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:47:23 Download gff for
BS07831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-RA | 133..1821 | 10..1699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:27 Download gff for
BS07831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-RC | 139..1821 | 17..1699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:36 Download gff for
BS07831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-RA | 139..1821 | 17..1699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:38 Download gff for
BS07831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frma-RF | 161..1843 | 17..1699 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:38 Download gff for
BS07831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5494146..5495772 | 73..1699 | 100 | <- | Minus |
| X | 5495837..5495892 | 17..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:27 Download gff for
BS07831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5388179..5389805 | 73..1699 | 100 | <- | Minus |
| arm_X | 5389870..5389925 | 17..72 | 100 | | Minus |
BS07831.pep Sequence
Translation from 16 to 1698
> BS07831.pep
MDRLDYNYQEKLADLLDNEREDDEPHFLQQLRNFYTACRKPLSQDQVLRI
LEHLIVMENIQNEELSVGLTAAFRLQVLIDLNDSNTYDIWKQLMSHRKHW
DPNTTNREPLTREMFDKLWASLPKIPFPFKEYYWRELSELEEKIMSYGSE
DDGFDSGDLVTRIPPFWMMPWPNGNITYENLSQMAHWLDIKANEFILTYI
YMRLKLVAEGVSTESWHIDRDQCAEQSRQILSHPAAWLVEKNHPRLKEEP
VLQDIFAELKQRFGQKLLANRNNFTRSTQHFLLGKLKRMRLRLSILPRNS
SAQSMVRRIERHYRDVHMNASDYFGNLHIGLNHSRSHKKYAQLWAIVFGR
QLIPSRISKSDLYPTQVRGYGTYASAFYIVKQNMLIVPLSLLEPPFYTHG
QPSILTYSALGFILGHELSHGFDSEGMTFSSHGVGSSAVDRELDRNPRFQ
QELGCLRRRFGRKRYEKFADASGLELAYSAYFDTAQTDHKRNRSAEELVT
QKQQFFHNFAQFFCSDKELLQAHDHGSDRKRVNDAVAHFEPFREAFSCGP
SPRRRQCRLY*
BS07831.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frma-PG | 611 | CG3239-PG | 52..611 | 1..560 | 2984 | 100 | Plus |
| frma-PF | 611 | CG3239-PF | 52..611 | 1..560 | 2984 | 100 | Plus |
| CG42370-PA | 655 | CG9508-PA | 295..655 | 188..560 | 350 | 27.4 | Plus |
| CG9507-PA | 684 | CG9507-PA | 324..684 | 201..560 | 336 | 27.3 | Plus |
| CG8550-PA | 633 | CG8550-PA | 65..612 | 2..552 | 316 | 24.7 | Plus |
