Clone BS07832 Report

Search the DGRC for BS07832

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptRab5-RC
Protein status:BS07832.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07832.3prime Sequence

690 bp (689 high quality bases) assembled on 2006-01-06

> BS07832.3prime
ATGGTCTAGAAAGCTTTCACTTGCAGCAGTTGTTCGTCGGTCGATTTGTT
TCGGTTCCAGTCGGCCTTATGCTGGTTCCCTGATTGTTGGCGCCATCGTT
CTTAGGTAGTTTCTTGGCAATGGCCAAGAAGATGTCGTTCACATTCATGC
CCGTCTTGGCGGAGGTTTCCATGAACAGCAGCCCGTTCTCCTCGGCATAT
TGCTTCGCTTCATCGAACTCTACGACGCGAATGTTTGACAAATCTGCCTT
GTTGCCGGCCAGCGCAATGACAATGTTTGGTGAGGCTTGTTTATGCAGTT
CCTTGACCCAGGTCTTCGCACGCTGAAAACTGTCCTGATTCTGTATATCA
TAGACGACAATAGCGGCCTGCGCTCCTCGATAATACATGGGAGCTAAGCT
GTGGTACCGCTCCTGGCCAGCCGTGTCCCAGATCTCGAACTTAACGACAG
TGTCCTCTATGCAAATAGTCTGTGTCAGAAAGGCCGCACCTATCGTGCTC
TCCTGGTACTCGTGGAACTGTCCCTTGACGAAGCGCAGCACCAGTGAGGA
CTTGCCCACAGCGGACTCGCCGAGGAGCACCAACTTGAATTGGCAGCTTT
TGTTCTGCGAGGTGCCATTGGGCCGCTGCGCCGTTCCAGTGCCGCTGGCA
CCGCCGCTGCGTGGAGTGGTTGCCATGTCGACTGATAACT

BS07832.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3664-PA 660 Rab5-RA 1..660 676..17 3300 100 Minus
CG3664-PB 660 Rab5-RB 1..660 676..17 3300 100 Minus
CG3664-PF 660 Rab5-RF 1..660 676..17 3300 100 Minus
CG3664-PD 660 Rab5-RD 1..660 676..17 3300 100 Minus
CG3664-PC 660 Rab5-RC 1..660 676..17 3300 100 Minus
CG3664-PE 660 Rab5-RE 1..660 676..17 3300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rab5-RI 1775 CG3664-RI 274..934 677..17 3305 100 Minus
Rab5-RH 1772 CG3664-RH 275..935 677..17 3305 100 Minus
Rab5-RG 1785 CG3664-RG 284..944 677..17 3305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2361157..2361429 405..677 1365 100 Plus
2L 23513712 2L 2360633..2360801 118..286 845 100 Plus
2L 23513712 2L 2360971..2361093 286..408 615 100 Plus
2L 23513712 2L 2360469..2360570 17..118 510 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:57:01 has no hits.

BS07832.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:06 Download gff for BS07832.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab5-PB 1..660 17..676 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:33 Download gff for BS07832.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3664-PE 1..660 17..676 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:32:28 Download gff for BS07832.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab5-RG 280..944 17..680 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:31 Download gff for BS07832.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab5-RG 280..944 17..680 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:31 Download gff for BS07832.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2360633..2360801 118..286 100 <- Plus
2L 2360972..2361092 287..407 100 <- Plus
2L 2361160..2361433 408..680 99   Plus
2L 2360469..2360569 17..117 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:32:28 Download gff for BS07832.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2360469..2360569 17..117 100 <- Plus
arm_2L 2360633..2360801 118..286 100 <- Plus
arm_2L 2360972..2361092 287..407 100 <- Plus
arm_2L 2361160..2361433 408..680 99   Plus

BS07832.5prime Sequence

690 bp (689 high quality bases) assembled on 2006-01-06

> BS07832.5prime
GAAGTTATCAGTCGACATGGCAACCACTCCACGCAGCGGCGGTGCCAGCG
GCACTGGAACGGCGCAGCGGCCCAATGGCACCTCGCAGAACAAAAGCTGC
CAATTCAAGTTGGTGCTCCTCGGCGAGTCCGCTGTGGGCAAGTCCTCACT
GGTGCTGCGCTTCGTCAAGGGACAGTTCCACGAGTACCAGGAGAGCACGA
TAGGTGCGGCCTTTCTGACACAGACTATTTGCATAGAGGACACTGTCGTT
AAGTTCGAGATCTGGGACACGGCTGGCCAGGAGCGGTACCACAGCTTAGC
TCCCATGTATTATCGAGGAGCGCAGGCCGCTATTGTCGTCTATGATATAC
AGAATCAGGACAGTTTTCAGCGTGCGAAGACCTGGGTCAAGGAACTGCAT
AAACAAGCCTCACCAAACATTGTCATTGCGCTGGCCGGCAACAAGGCAGA
TTTGTCAAACATTCGCGTCGTAGAGTTCGATGAAGCGAAGCAATATGCCG
AGGAGAACGGGCTGCTGTTCATGGAAACCTCCGCCAAGACGGGCATGAAT
GTGAACGACATCTTCTTGGCCATTGCCAAGAAACTACCTAAGAACGATGG
CGCCAACAATCAGGGAACCAGCATAAGGCCGACTGGAACCGAAACAAATC
GACCGACGAACAACTGCTGCAAGTGAAAGCTTTCTAGACC

BS07832.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3664-PA 660 Rab5-RA 1..660 17..676 3300 100 Plus
CG3664-PB 660 Rab5-RB 1..660 17..676 3300 100 Plus
CG3664-PF 660 Rab5-RF 1..660 17..676 3300 100 Plus
CG3664-PD 660 Rab5-RD 1..660 17..676 3300 100 Plus
CG3664-PC 660 Rab5-RC 1..660 17..676 3300 100 Plus
CG3664-PE 660 Rab5-RE 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
Rab5-RI 1775 CG3664-RI 274..934 16..676 3305 100 Plus
Rab5-RH 1772 CG3664-RH 275..935 16..676 3305 100 Plus
Rab5-RG 1785 CG3664-RG 284..944 16..676 3305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2361157..2361429 288..16 1365 100 Minus
2L 23513712 2L 2360633..2360801 575..407 845 100 Minus
2L 23513712 2L 2360971..2361093 407..285 615 100 Minus
2L 23513712 2L 2360469..2360570 676..575 510 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:39:15 has no hits.

BS07832.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:07 Download gff for BS07832.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab5-PB 1..660 17..676 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:34 Download gff for BS07832.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3664-PE 1..660 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:02:30 Download gff for BS07832.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab5-RG 280..944 13..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:54 Download gff for BS07832.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab5-RG 280..944 13..676 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:54 Download gff for BS07832.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2360469..2360569 576..676 100 <- Minus
2L 2360633..2360801 407..575 100 <- Minus
2L 2360972..2361092 286..406 100 <- Minus
2L 2361160..2361433 13..285 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:02:30 Download gff for BS07832.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2360469..2360569 576..676 100 <- Minus
arm_2L 2360972..2361092 286..406 100 <- Minus
arm_2L 2360633..2360801 407..575 100 <- Minus
arm_2L 2361160..2361433 13..285 99   Minus

BS07832.complete Sequence

692 bp (692 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636005

> BS07832.complete
GAAGTTATCAGTCGACATGGCAACCACTCCACGCAGCGGCGGTGCCAGCG
GCACTGGAACGGCGCAGCGGCCCAATGGCACCTCGCAGAACAAAAGCTGC
CAATTCAAGTTGGTGCTCCTCGGCGAGTCCGCTGTGGGCAAGTCCTCACT
GGTGCTGCGCTTCGTCAAGGGACAGTTCCACGAGTACCAGGAGAGCACGA
TAGGTGCGGCCTTTCTGACACAGACTATTTGCATAGAGGACACTGTCGTT
AAGTTCGAGATCTGGGACACGGCTGGCCAGGAGCGGTACCACAGCTTAGC
TCCCATGTATTATCGAGGAGCGCAGGCCGCTATTGTCGTCTATGATATAC
AGAATCAGGACAGTTTTCAGCGTGCGAAGACCTGGGTCAAGGAACTGCAT
AAACAAGCCTCACCAAACATTGTCATTGCGCTGGCCGGCAACAAGGCAGA
TTTGTCAAACATTCGCGTCGTAGAGTTCGATGAAGCGAAGCAATATGCCG
AGGAGAACGGGCTGCTGTTCATGGAAACCTCCGCCAAGACGGGCATGAAT
GTGAACGACATCTTCTTGGCCATTGCCAAGAAACTACCTAAGAACGATGG
CGCCAACAATCAGGGAACCAGCATAAGGCCGACTGGAACCGAAACAAATC
GACCGACGAACAACTGCTGCAAGTGAAAGCTTTCTAGACCAT

BS07832.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rab5-RI 660 CG3664-PI 1..660 17..676 3300 100 Plus
Rab5-RH 660 CG3664-PH 1..660 17..676 3300 100 Plus
Rab5-RG 660 CG3664-PG 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rab5-RI 1775 CG3664-RI 274..934 16..676 3305 100 Plus
Rab5-RH 1772 CG3664-RH 275..935 16..676 3305 100 Plus
Rab5-RG 1785 CG3664-RG 284..944 16..676 3305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2361157..2361429 288..16 1365 100 Minus
2L 23513712 2L 2360633..2360801 575..407 845 100 Minus
2L 23513712 2L 2360971..2361093 407..285 615 100 Minus
2L 23513712 2L 2360469..2360570 676..575 510 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:27:05 has no hits.

BS07832.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:49 Download gff for BS07832.complete
Subject Subject Range Query Range Percent Splice Strand
Rab5-RF 1..660 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:27 Download gff for BS07832.complete
Subject Subject Range Query Range Percent Splice Strand
Rab5-RF 216..880 13..676 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:16 Download gff for BS07832.complete
Subject Subject Range Query Range Percent Splice Strand
Rab5-RG 285..943 17..675 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:49 Download gff for BS07832.complete
Subject Subject Range Query Range Percent Splice Strand
Rab5-RF 216..880 13..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:03 Download gff for BS07832.complete
Subject Subject Range Query Range Percent Splice Strand
Rab5-RG 285..943 17..675 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:03 Download gff for BS07832.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2361160..2361428 17..285 100   Minus
2L 2360470..2360569 576..675 100 <- Minus
2L 2360633..2360801 407..575 100 <- Minus
2L 2360972..2361092 286..406 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:16 Download gff for BS07832.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2361160..2361428 17..285 100   Minus
arm_2L 2360470..2360569 576..675 100 <- Minus
arm_2L 2360633..2360801 407..575 100 <- Minus
arm_2L 2360972..2361092 286..406 100 <- Minus

BS07832.pep Sequence

Translation from 16 to 675

> BS07832.pep
MATTPRSGGASGTGTAQRPNGTSQNKSCQFKLVLLGESAVGKSSLVLRFV
KGQFHEYQESTIGAAFLTQTICIEDTVVKFEIWDTAGQERYHSLAPMYYR
GAQAAIVVYDIQNQDSFQRAKTWVKELHKQASPNIVIALAGNKADLSNIR
VVEFDEAKQYAEENGLLFMETSAKTGMNVNDIFLAIAKKLPKNDGANNQG
TSIRPTGTETNRPTNNCCK*

BS07832.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
Rab5-PI 219 CG3664-PI 1..219 1..219 1132 100 Plus
Rab5-PH 219 CG3664-PH 1..219 1..219 1132 100 Plus
Rab5-PG 219 CG3664-PG 1..219 1..219 1132 100 Plus
Rab5-PE 219 CG3664-PE 1..219 1..219 1132 100 Plus
Rab5-PC 219 CG3664-PC 1..219 1..219 1132 100 Plus