Clone Sequence Records
BS07832.3prime Sequence
690 bp (689 high quality bases) assembled on 2006-01-06
> BS07832.3prime
ATGGTCTAGAAAGCTTTCACTTGCAGCAGTTGTTCGTCGGTCGATTTGTT
TCGGTTCCAGTCGGCCTTATGCTGGTTCCCTGATTGTTGGCGCCATCGTT
CTTAGGTAGTTTCTTGGCAATGGCCAAGAAGATGTCGTTCACATTCATGC
CCGTCTTGGCGGAGGTTTCCATGAACAGCAGCCCGTTCTCCTCGGCATAT
TGCTTCGCTTCATCGAACTCTACGACGCGAATGTTTGACAAATCTGCCTT
GTTGCCGGCCAGCGCAATGACAATGTTTGGTGAGGCTTGTTTATGCAGTT
CCTTGACCCAGGTCTTCGCACGCTGAAAACTGTCCTGATTCTGTATATCA
TAGACGACAATAGCGGCCTGCGCTCCTCGATAATACATGGGAGCTAAGCT
GTGGTACCGCTCCTGGCCAGCCGTGTCCCAGATCTCGAACTTAACGACAG
TGTCCTCTATGCAAATAGTCTGTGTCAGAAAGGCCGCACCTATCGTGCTC
TCCTGGTACTCGTGGAACTGTCCCTTGACGAAGCGCAGCACCAGTGAGGA
CTTGCCCACAGCGGACTCGCCGAGGAGCACCAACTTGAATTGGCAGCTTT
TGTTCTGCGAGGTGCCATTGGGCCGCTGCGCCGTTCCAGTGCCGCTGGCA
CCGCCGCTGCGTGGAGTGGTTGCCATGTCGACTGATAACT
BS07832.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3664-PA | 660 | Rab5-RA | 1..660 | 676..17 | 3300 | 100 | Minus |
CG3664-PB | 660 | Rab5-RB | 1..660 | 676..17 | 3300 | 100 | Minus |
CG3664-PF | 660 | Rab5-RF | 1..660 | 676..17 | 3300 | 100 | Minus |
CG3664-PD | 660 | Rab5-RD | 1..660 | 676..17 | 3300 | 100 | Minus |
CG3664-PC | 660 | Rab5-RC | 1..660 | 676..17 | 3300 | 100 | Minus |
CG3664-PE | 660 | Rab5-RE | 1..660 | 676..17 | 3300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:57:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab5-RI | 1775 | CG3664-RI | 274..934 | 677..17 | 3305 | 100 | Minus |
Rab5-RH | 1772 | CG3664-RH | 275..935 | 677..17 | 3305 | 100 | Minus |
Rab5-RG | 1785 | CG3664-RG | 284..944 | 677..17 | 3305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2361157..2361429 | 405..677 | 1365 | 100 | Plus |
2L | 23513712 | 2L | 2360633..2360801 | 118..286 | 845 | 100 | Plus |
2L | 23513712 | 2L | 2360971..2361093 | 286..408 | 615 | 100 | Plus |
2L | 23513712 | 2L | 2360469..2360570 | 17..118 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:57:01 has no hits.
BS07832.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:06 Download gff for
BS07832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-PB | 1..660 | 17..676 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:33 Download gff for
BS07832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3664-PE | 1..660 | 17..676 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:32:28 Download gff for
BS07832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RG | 280..944 | 17..680 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:31 Download gff for
BS07832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RG | 280..944 | 17..680 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:31 Download gff for
BS07832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2360633..2360801 | 118..286 | 100 | <- | Plus |
2L | 2360972..2361092 | 287..407 | 100 | <- | Plus |
2L | 2361160..2361433 | 408..680 | 99 | | Plus |
2L | 2360469..2360569 | 17..117 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:32:28 Download gff for
BS07832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2360469..2360569 | 17..117 | 100 | <- | Plus |
arm_2L | 2360633..2360801 | 118..286 | 100 | <- | Plus |
arm_2L | 2360972..2361092 | 287..407 | 100 | <- | Plus |
arm_2L | 2361160..2361433 | 408..680 | 99 | | Plus |
BS07832.5prime Sequence
690 bp (689 high quality bases) assembled on 2006-01-06
> BS07832.5prime
GAAGTTATCAGTCGACATGGCAACCACTCCACGCAGCGGCGGTGCCAGCG
GCACTGGAACGGCGCAGCGGCCCAATGGCACCTCGCAGAACAAAAGCTGC
CAATTCAAGTTGGTGCTCCTCGGCGAGTCCGCTGTGGGCAAGTCCTCACT
GGTGCTGCGCTTCGTCAAGGGACAGTTCCACGAGTACCAGGAGAGCACGA
TAGGTGCGGCCTTTCTGACACAGACTATTTGCATAGAGGACACTGTCGTT
AAGTTCGAGATCTGGGACACGGCTGGCCAGGAGCGGTACCACAGCTTAGC
TCCCATGTATTATCGAGGAGCGCAGGCCGCTATTGTCGTCTATGATATAC
AGAATCAGGACAGTTTTCAGCGTGCGAAGACCTGGGTCAAGGAACTGCAT
AAACAAGCCTCACCAAACATTGTCATTGCGCTGGCCGGCAACAAGGCAGA
TTTGTCAAACATTCGCGTCGTAGAGTTCGATGAAGCGAAGCAATATGCCG
AGGAGAACGGGCTGCTGTTCATGGAAACCTCCGCCAAGACGGGCATGAAT
GTGAACGACATCTTCTTGGCCATTGCCAAGAAACTACCTAAGAACGATGG
CGCCAACAATCAGGGAACCAGCATAAGGCCGACTGGAACCGAAACAAATC
GACCGACGAACAACTGCTGCAAGTGAAAGCTTTCTAGACC
BS07832.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3664-PA | 660 | Rab5-RA | 1..660 | 17..676 | 3300 | 100 | Plus |
CG3664-PB | 660 | Rab5-RB | 1..660 | 17..676 | 3300 | 100 | Plus |
CG3664-PF | 660 | Rab5-RF | 1..660 | 17..676 | 3300 | 100 | Plus |
CG3664-PD | 660 | Rab5-RD | 1..660 | 17..676 | 3300 | 100 | Plus |
CG3664-PC | 660 | Rab5-RC | 1..660 | 17..676 | 3300 | 100 | Plus |
CG3664-PE | 660 | Rab5-RE | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab5-RI | 1775 | CG3664-RI | 274..934 | 16..676 | 3305 | 100 | Plus |
Rab5-RH | 1772 | CG3664-RH | 275..935 | 16..676 | 3305 | 100 | Plus |
Rab5-RG | 1785 | CG3664-RG | 284..944 | 16..676 | 3305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2361157..2361429 | 288..16 | 1365 | 100 | Minus |
2L | 23513712 | 2L | 2360633..2360801 | 575..407 | 845 | 100 | Minus |
2L | 23513712 | 2L | 2360971..2361093 | 407..285 | 615 | 100 | Minus |
2L | 23513712 | 2L | 2360469..2360570 | 676..575 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:39:15 has no hits.
BS07832.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:07 Download gff for
BS07832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-PB | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:34 Download gff for
BS07832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3664-PE | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:02:30 Download gff for
BS07832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RG | 280..944 | 13..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:54 Download gff for
BS07832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RG | 280..944 | 13..676 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:54 Download gff for
BS07832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2360469..2360569 | 576..676 | 100 | <- | Minus |
2L | 2360633..2360801 | 407..575 | 100 | <- | Minus |
2L | 2360972..2361092 | 286..406 | 100 | <- | Minus |
2L | 2361160..2361433 | 13..285 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:02:30 Download gff for
BS07832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2360469..2360569 | 576..676 | 100 | <- | Minus |
arm_2L | 2360972..2361092 | 286..406 | 100 | <- | Minus |
arm_2L | 2360633..2360801 | 407..575 | 100 | <- | Minus |
arm_2L | 2361160..2361433 | 13..285 | 99 | | Minus |
BS07832.complete Sequence
692 bp (692 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636005
> BS07832.complete
GAAGTTATCAGTCGACATGGCAACCACTCCACGCAGCGGCGGTGCCAGCG
GCACTGGAACGGCGCAGCGGCCCAATGGCACCTCGCAGAACAAAAGCTGC
CAATTCAAGTTGGTGCTCCTCGGCGAGTCCGCTGTGGGCAAGTCCTCACT
GGTGCTGCGCTTCGTCAAGGGACAGTTCCACGAGTACCAGGAGAGCACGA
TAGGTGCGGCCTTTCTGACACAGACTATTTGCATAGAGGACACTGTCGTT
AAGTTCGAGATCTGGGACACGGCTGGCCAGGAGCGGTACCACAGCTTAGC
TCCCATGTATTATCGAGGAGCGCAGGCCGCTATTGTCGTCTATGATATAC
AGAATCAGGACAGTTTTCAGCGTGCGAAGACCTGGGTCAAGGAACTGCAT
AAACAAGCCTCACCAAACATTGTCATTGCGCTGGCCGGCAACAAGGCAGA
TTTGTCAAACATTCGCGTCGTAGAGTTCGATGAAGCGAAGCAATATGCCG
AGGAGAACGGGCTGCTGTTCATGGAAACCTCCGCCAAGACGGGCATGAAT
GTGAACGACATCTTCTTGGCCATTGCCAAGAAACTACCTAAGAACGATGG
CGCCAACAATCAGGGAACCAGCATAAGGCCGACTGGAACCGAAACAAATC
GACCGACGAACAACTGCTGCAAGTGAAAGCTTTCTAGACCAT
BS07832.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab5-RI | 660 | CG3664-PI | 1..660 | 17..676 | 3300 | 100 | Plus |
Rab5-RH | 660 | CG3664-PH | 1..660 | 17..676 | 3300 | 100 | Plus |
Rab5-RG | 660 | CG3664-PG | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab5-RI | 1775 | CG3664-RI | 274..934 | 16..676 | 3305 | 100 | Plus |
Rab5-RH | 1772 | CG3664-RH | 275..935 | 16..676 | 3305 | 100 | Plus |
Rab5-RG | 1785 | CG3664-RG | 284..944 | 16..676 | 3305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2361157..2361429 | 288..16 | 1365 | 100 | Minus |
2L | 23513712 | 2L | 2360633..2360801 | 575..407 | 845 | 100 | Minus |
2L | 23513712 | 2L | 2360971..2361093 | 407..285 | 615 | 100 | Minus |
2L | 23513712 | 2L | 2360469..2360570 | 676..575 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:27:05 has no hits.
BS07832.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:49 Download gff for
BS07832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RF | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:27 Download gff for
BS07832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RF | 216..880 | 13..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:16 Download gff for
BS07832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RG | 285..943 | 17..675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:49 Download gff for
BS07832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RF | 216..880 | 13..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:03 Download gff for
BS07832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RG | 285..943 | 17..675 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:03 Download gff for
BS07832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2361160..2361428 | 17..285 | 100 | | Minus |
2L | 2360470..2360569 | 576..675 | 100 | <- | Minus |
2L | 2360633..2360801 | 407..575 | 100 | <- | Minus |
2L | 2360972..2361092 | 286..406 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:16 Download gff for
BS07832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2361160..2361428 | 17..285 | 100 | | Minus |
arm_2L | 2360470..2360569 | 576..675 | 100 | <- | Minus |
arm_2L | 2360633..2360801 | 407..575 | 100 | <- | Minus |
arm_2L | 2360972..2361092 | 286..406 | 100 | <- | Minus |
BS07832.pep Sequence
Translation from 16 to 675
> BS07832.pep
MATTPRSGGASGTGTAQRPNGTSQNKSCQFKLVLLGESAVGKSSLVLRFV
KGQFHEYQESTIGAAFLTQTICIEDTVVKFEIWDTAGQERYHSLAPMYYR
GAQAAIVVYDIQNQDSFQRAKTWVKELHKQASPNIVIALAGNKADLSNIR
VVEFDEAKQYAEENGLLFMETSAKTGMNVNDIFLAIAKKLPKNDGANNQG
TSIRPTGTETNRPTNNCCK*
BS07832.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab5-PI | 219 | CG3664-PI | 1..219 | 1..219 | 1132 | 100 | Plus |
Rab5-PH | 219 | CG3664-PH | 1..219 | 1..219 | 1132 | 100 | Plus |
Rab5-PG | 219 | CG3664-PG | 1..219 | 1..219 | 1132 | 100 | Plus |
Rab5-PE | 219 | CG3664-PE | 1..219 | 1..219 | 1132 | 100 | Plus |
Rab5-PC | 219 | CG3664-PC | 1..219 | 1..219 | 1132 | 100 | Plus |