Clone Sequence Records
BS07833.3prime Sequence
910 bp (827 high quality bases) assembled on 2006-01-06
> BS07833.3prime
ATGGTCTAGAAAGCTTCTACACCGCCTCCTCGGCCCCCTGAGTTTCCGCC
TGCTCAGTTTCCTGCCCATCCTCGTCGGCCACCTCCTTTACCACCTCCAT
TTGTTCCTCCTGGGTTCCTACCGCCTTCTTTTCATTGTCCTCCTTAGCCA
TTGCCTGTTTCTCCAACTGCGTTTGCGATGCTGACGATGTGTCCTGCTTT
AAGAGTTCTCGCAAAAACATGGTGGCATAGGCAGCCGTGGGCAGCGAGAA
CTCCAGCAGGAGTGCCATGTAATTGGCCTCAGCTTCAGCTGGTTCTGGTG
CAACCGGAATGTTCTTCAATAGCTCCCAGTCGGAGGCGATAAGTGTATCC
TCCGGCGTATTGTACATTCTAAAGCTCCACTTGAGATCACTGGACGATAT
GATCATCTTGCGGTAGGCGCCAGCCAATGCGTATGTCTTCTCCTTGTGCT
TCAGTTGATCCGAGGAAAGACCCACTTCGGCGAGCATTTCCTCGTACCAC
GCGCCGCACTCGTTGCTGGGATAGGTGATGTCGTGTCCAGGCAGGGGAAG
GACCACATCGCAAAGTTTGTACTTGCCGCTAGCGATGTCTTCTGCTGTGA
GCGGGCGAACCTTTCGCTTGAAAATCGACTCCTCTTCGATGGCTTCATCC
CCTTCGGGGACTTCCAGAGGTTCATCGTTAGGCTCCTCTTCTTTTTGCTC
TTCCAAGGCCTCGCCCTGCTGCGCCTGCTCTTCCGAGGCTTCCGACTGAT
CCTGCTCCACATAAACCAAATCCCCGGGTATCAATTTCAAGCCGAACTCC
TTAATTCGTCTAGACGCTATCCTGTTGAAGATCAGGCTTTGGTAAGCATG
TGGATATAGCATGAGCATGTTGCGTGNTATCTGCCGCAGAGCTGATGAGT
AATCTGATTC
BS07833.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6745-PA | 2205 | CG6745-RA | 1312..2205 | 910..17 | 4451 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6745-RA | 2770 | CG6745-RA | 1394..2287 | 910..17 | 4459 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:15:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8511631..8512524 | 910..17 | 4459 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:15:30 has no hits.
BS07833.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:08 Download gff for
BS07833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-PA | 1312..2205 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:36 Download gff for
BS07833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-PA | 1312..2205 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:22:23 Download gff for
BS07833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 1394..2289 | 13..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:50:10 Download gff for
BS07833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 1394..2289 | 13..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:50:10 Download gff for
BS07833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8511631..8512526 | 13..910 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:22:23 Download gff for
BS07833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8504731..8505626 | 13..910 | 99 | | Minus |
BS07833.5prime Sequence
919 bp (794 high quality bases) assembled on 2006-01-06
> BS07833.5prime
GAAGTTATCAGTCGACATGGGCAAGGATCGGGGCAGAGGACGTAGGAATA
ACCATTCCGGGCCATACAACAAGAGCAACTGGCGTGGTCAGAAGAAGGAT
CGCCCCCAAAACAATGGTGGCGGTCAGCGCAACAGTGCTCCACAACAGAA
ATCCACGCTGCTGGAGACCCAAGTGGGCATTACGGAGTTCACTAACCCGG
AGGCACCTGGCTTCACGGGAATACTTAAGTCTCGCTTCTCTGATTTTCAC
GTGAACGAGATTGATAGCAATGGAAAGGTTCTGGAACTGAACGATCTCAG
TGTGCCTAAAGTGGCTATTGTGGCTGTGGCCGAAAACGAACTGGACAACT
GGCGGAAAGAACTGGAGGCAGTAATCGGCCCGGAAGTTTGGCAGGATATA
GCCAATCTGGCTAAGGCCAAAAACGATCCCGCGATCGAGCAAAAGGTGGA
GATTGATGTGACCACTCTGGATAAGGAGCAGCGAACACAAGTCCACCAGA
TGATAAAACAGCTTTACAAGGGCAAGCTACTGTCCACAACCATTGGACAG
CAGCAGGCTAAGCCGAAGGTCCAGGAGGAGGCATCTTTGGAAAATAAGGA
TGCGGCTGAAGGTGAAACCTCAACCCAGAAAGACTCACAGGTGCCGGCAG
AGGAGAAGAAGACTATAAAAGTATTTAAACCAAAGCCAGGACGCGGTGAC
AAACGCTGGAGCTTTCCGGCGGATTACGTGACCTTCCTGGTGCACAAAAC
CAATTTGGTTACCAGCGATGTGGCCTCTACTTTAGCAGCGCGACTGAACT
TACGACCATCGCAGGTGAACTACAGCGGCATCAAGGACAAGCGGGCCAAA
ACCACCCAGAAGTTCTCCGTCAAGCGTCGTACACCAGAGAGCATTTTGGG
TGCAGCTCGCTCCCCACGG
BS07833.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6745-PA | 2205 | CG6745-RA | 1..898 | 17..914 | 4465 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6745-RA | 2770 | CG6745-RA | 83..985 | 17..919 | 4485 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8510512..8510886 | 323..697 | 1875 | 100 | Plus |
3L | 28110227 | 3L | 8510258..8510451 | 130..323 | 955 | 99.5 | Plus |
3L | 28110227 | 3L | 8510085..8510203 | 17..135 | 595 | 100 | Plus |
3L | 28110227 | 3L | 8511102..8511222 | 799..919 | 575 | 98.3 | Plus |
3L | 28110227 | 3L | 8510939..8511042 | 695..798 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:57:43 has no hits.
BS07833.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:09 Download gff for
BS07833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:38 Download gff for
BS07833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:49 Download gff for
BS07833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 83..985 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:23:30 Download gff for
BS07833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 83..985 | 17..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:23:30 Download gff for
BS07833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8510085..8510203 | 17..135 | 100 | -> | Plus |
3L | 8510264..8510451 | 136..323 | 100 | -> | Plus |
3L | 8510513..8510884 | 324..695 | 100 | -> | Plus |
3L | 8510940..8511042 | 696..798 | 100 | -> | Plus |
3L | 8511102..8511222 | 799..919 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:49 Download gff for
BS07833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8503185..8503303 | 17..135 | 100 | -> | Plus |
arm_3L | 8503364..8503551 | 136..323 | 100 | -> | Plus |
arm_3L | 8503613..8503984 | 324..695 | 100 | -> | Plus |
arm_3L | 8504040..8504142 | 696..798 | 100 | -> | Plus |
arm_3L | 8504202..8504322 | 799..919 | 98 | | Plus |
BS07833.complete Sequence
2237 bp assembled on 2008-01-03
GenBank Submission: FJ636006
> BS07833.complete
GAAGTTATCAGTCGACATGGGCAAGGATCGGGGCAGAGGACGTAGGAATA
ACCATTCCGGGCCATACAACAAGAGCAACTGGCGTGGTCAGAAGAAGGAT
CGCCCCCAAAACAATGGTGGCGGTCAGCGCAACAGTGCTCCACAACAGAA
ATCCACGCTGCTGGAGACCCAAGTGGGCATTACGGAGTTCACTAACCCGG
AGGCACCTGGCTTCACGGGAATACTTAAGTCTCGCTTCTCTGATTTTCAC
GTGAACGAGATTGATAGCAATGGAAAGGTTCTGGAACTGAACGATCTCAG
TGTGCCTAAAGTGGCTATTGTGGCTGTGGCCGAAAACGAACTGGACAACT
GGCGGAAAGAACTGGAGGCAGTAATCGGCCCGGAAGTTTGGCAGGATATA
GCCAATCTGGCTAAGGCCAAAAACGATCCCGCGATCGAGCAAAAGGTGGA
GATTGATGTGACCACTCTGGATAAGGAGCAGCGAACACAAGTCCACCAGA
TGATAAAACAGCTTTACAAGGGCAAGCTACTGTCCACAACCATTGGACAG
CAGCAGGCTAAGCCGAAGGTCCAGGAGGAGGCATCTTTGGAAAATAAGGA
TGCGGCTGAAGGTGAAACCTCAACCCAGAAAGACTCACAGGTGCCGGCAG
AGGAGAAGAAGACTATAAAAGTATTTAAACCAAAGCCAGGACGCGGTGAC
AAACGCTGGAGCTTTCCGGCGGATTACGTGACCTTCCTGGTGCACAAAAC
CAATTTGGTTACCAGCGATGTGGCCTCTACTTTAGCAGCGCGACTGAACT
TACGACCATCGCAGGTGAACTACAGCGGCATCAAGGACAAGCGGGCCAAA
ACCACCCAGAAGTTCTCCGTCAAGCGTCGTACACCAGAGAGCATTTTGGT
TGCAGCTCGCTCCCAACGGAATGTTCATATCGGCAACTTTGGATTCGAAT
CCAATACACTGAAGCTAGGCGATTTGCAGGGCAATCGTTTTCGTATTGCC
TTGCGACACATTGCCAAGGAGAAGCGAGAAGAAATCGAGCAGGCACTGCA
ATCATTGAAGGAACGCGGCTTCATCAACTACTATGGCTTGCAGCGGTTCG
GCAACAGCGCCAGTGTCCCAACCTATGAGGTGGGTGTTGCTCTGCTCAAG
CACGATTACAAACTGGCCTGCGAACTGATCCTGAAACCCCGGGACTCGGA
TGTGGAGTTTTTGCGTCCCATACGCGAGGAGTGGTGGAAAAATCGCGACT
CCGCGGCGGCAGCTGCACAGATCTACGGCGAAAAGTTCATCGAAAAGAAG
CTGCTGGACGGCTTGGCCAGATTTGGTGAATCAGATTACTCATCAGCTCT
GCGGCAGATACCACGCAACATGCTCATGCTATATCCACATGCTTACCAAA
GCCTGATCTTCAACAGGATAGCGTCTAGACGAATTAAGGAGTTCGGCTTG
AAATTGATACCCGGGGATTTGGTTTATGTGGAGCAGGATCAGTCGGAAGC
CTCGGAAGAGCAGGCGCAGCAGGGCGAGGCCTTGGAAGAGCAAAAAGAAG
AGGAGCCTAACGATGAACCTCTGGAAGTCCCCGAAGGGGATGAAGCCATC
GAAGAGGAGTCGATTTTCAAGCGAAAGGTTCGCCCGCTCACAGCAGAAGA
CATCGCTAGCGGCAAGTACAAACTTTGCGATGTGGTCCTTCCCCTGCCTG
GACACGACATCACCTATCCCAGCAACGAGTGCGGCGCGTGGTACGAGGAA
ATGCTCGCCGAAGTGGGTCTTTCCTCGGATCAACTGAAGCACAAGGAGAA
GACATACGCATTGGCTGGCGCCTACCGCAAGATGATCATATCGTCCAGTG
ATCTCAAGTGGAGCTTTAGAATGTACAATACGCCGGAGGATACACTTATC
GCCTCCGACTGGGAGCTATTGAAGAACATTCCGGTTGCACCAGAACCAGC
TGAAGCTGAGGCCAATTACATGGCACTCCTGCTGGAGTTCTCGCTGCCCA
CGGCTGCCTATGCCACCATGTTTTTGCGAGAACTCTTAAAGCAGGACACA
TCGTCAGCATCGCAAACGCAGTTGGAGAAACAGGCAATGGCTAAGGAGGA
CAATGAAAAGAAGGCGGTAGGAACCCAGGAGGAACAAATGGAGGTGGTAA
AGGAGGTGGCCGACGAGGATGGGCAGGAAACTGAGCAGGCGGAAACTCAG
GGGGCCGAGGAGGCGGTGTAGAAGCTTTCTAGACCAT
BS07833.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6745-RA | 2205 | CG6745-PA | 1..2205 | 17..2221 | 11025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6745-RA | 2770 | CG6745-RA | 83..2287 | 17..2221 | 11025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8511102..8512524 | 799..2221 | 7115 | 100 | Plus |
3L | 28110227 | 3L | 8510512..8510886 | 323..697 | 1875 | 100 | Plus |
3L | 28110227 | 3L | 8510258..8510451 | 130..323 | 955 | 99.5 | Plus |
3L | 28110227 | 3L | 8510085..8510203 | 17..135 | 595 | 100 | Plus |
3L | 28110227 | 3L | 8510939..8511042 | 695..798 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:11:21 has no hits.
BS07833.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:20 Download gff for
BS07833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 1..2205 | 17..2221 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:43 Download gff for
BS07833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 48..2252 | 17..2221 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:25 Download gff for
BS07833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 83..2287 | 17..2221 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:20 Download gff for
BS07833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 48..2254 | 17..2225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:09 Download gff for
BS07833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 83..2287 | 17..2221 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:09 Download gff for
BS07833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8510085..8510203 | 17..135 | 100 | -> | Plus |
3L | 8510264..8510451 | 136..323 | 100 | -> | Plus |
3L | 8510513..8510884 | 324..695 | 100 | -> | Plus |
3L | 8510940..8511042 | 696..798 | 100 | -> | Plus |
3L | 8511102..8512524 | 799..2221 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:25 Download gff for
BS07833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8503185..8503303 | 17..135 | 100 | -> | Plus |
arm_3L | 8503364..8503551 | 136..323 | 100 | -> | Plus |
arm_3L | 8503613..8503984 | 324..695 | 100 | -> | Plus |
arm_3L | 8504040..8504142 | 696..798 | 100 | -> | Plus |
arm_3L | 8504202..8505624 | 799..2221 | 100 | | Plus |
BS07833.pep Sequence
Translation from 16 to 2220
> BS07833.pep
MGKDRGRGRRNNHSGPYNKSNWRGQKKDRPQNNGGGQRNSAPQQKSTLLE
TQVGITEFTNPEAPGFTGILKSRFSDFHVNEIDSNGKVLELNDLSVPKVA
IVAVAENELDNWRKELEAVIGPEVWQDIANLAKAKNDPAIEQKVEIDVTT
LDKEQRTQVHQMIKQLYKGKLLSTTIGQQQAKPKVQEEASLENKDAAEGE
TSTQKDSQVPAEEKKTIKVFKPKPGRGDKRWSFPADYVTFLVHKTNLVTS
DVASTLAARLNLRPSQVNYSGIKDKRAKTTQKFSVKRRTPESILVAARSQ
RNVHIGNFGFESNTLKLGDLQGNRFRIALRHIAKEKREEIEQALQSLKER
GFINYYGLQRFGNSASVPTYEVGVALLKHDYKLACELILKPRDSDVEFLR
PIREEWWKNRDSAAAAAQIYGEKFIEKKLLDGLARFGESDYSSALRQIPR
NMLMLYPHAYQSLIFNRIASRRIKEFGLKLIPGDLVYVEQDQSEASEEQA
QQGEALEEQKEEEPNDEPLEVPEGDEAIEEESIFKRKVRPLTAEDIASGK
YKLCDVVLPLPGHDITYPSNECGAWYEEMLAEVGLSSDQLKHKEKTYALA
GAYRKMIISSSDLKWSFRMYNTPEDTLIASDWELLKNIPVAPEPAEAEAN
YMALLLEFSLPTAAYATMFLRELLKQDTSSASQTQLEKQAMAKEDNEKKA
VGTQEEQMEVVKEVADEDGQETEQAETQGAEEAV*
BS07833.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6745-PA | 734 | CG6745-PA | 1..734 | 1..734 | 3758 | 100 | Plus |