Clone BS07833 Report

Search the DGRC for BS07833

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG6745-RA
Protein status:BS07833.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07833.3prime Sequence

910 bp (827 high quality bases) assembled on 2006-01-06

> BS07833.3prime
ATGGTCTAGAAAGCTTCTACACCGCCTCCTCGGCCCCCTGAGTTTCCGCC
TGCTCAGTTTCCTGCCCATCCTCGTCGGCCACCTCCTTTACCACCTCCAT
TTGTTCCTCCTGGGTTCCTACCGCCTTCTTTTCATTGTCCTCCTTAGCCA
TTGCCTGTTTCTCCAACTGCGTTTGCGATGCTGACGATGTGTCCTGCTTT
AAGAGTTCTCGCAAAAACATGGTGGCATAGGCAGCCGTGGGCAGCGAGAA
CTCCAGCAGGAGTGCCATGTAATTGGCCTCAGCTTCAGCTGGTTCTGGTG
CAACCGGAATGTTCTTCAATAGCTCCCAGTCGGAGGCGATAAGTGTATCC
TCCGGCGTATTGTACATTCTAAAGCTCCACTTGAGATCACTGGACGATAT
GATCATCTTGCGGTAGGCGCCAGCCAATGCGTATGTCTTCTCCTTGTGCT
TCAGTTGATCCGAGGAAAGACCCACTTCGGCGAGCATTTCCTCGTACCAC
GCGCCGCACTCGTTGCTGGGATAGGTGATGTCGTGTCCAGGCAGGGGAAG
GACCACATCGCAAAGTTTGTACTTGCCGCTAGCGATGTCTTCTGCTGTGA
GCGGGCGAACCTTTCGCTTGAAAATCGACTCCTCTTCGATGGCTTCATCC
CCTTCGGGGACTTCCAGAGGTTCATCGTTAGGCTCCTCTTCTTTTTGCTC
TTCCAAGGCCTCGCCCTGCTGCGCCTGCTCTTCCGAGGCTTCCGACTGAT
CCTGCTCCACATAAACCAAATCCCCGGGTATCAATTTCAAGCCGAACTCC
TTAATTCGTCTAGACGCTATCCTGTTGAAGATCAGGCTTTGGTAAGCATG
TGGATATAGCATGAGCATGTTGCGTGNTATCTGCCGCAGAGCTGATGAGT
AATCTGATTC

BS07833.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6745-PA 2205 CG6745-RA 1312..2205 910..17 4451 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6745-RA 2770 CG6745-RA 1394..2287 910..17 4459 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8511631..8512524 910..17 4459 99.9 Minus
Blast to na_te.dros performed on 2015-02-01 08:15:30 has no hits.

BS07833.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:08 Download gff for BS07833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6745-PA 1312..2205 17..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:36 Download gff for BS07833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6745-PA 1312..2205 17..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:22:23 Download gff for BS07833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 1394..2289 13..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:50:10 Download gff for BS07833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 1394..2289 13..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:50:10 Download gff for BS07833.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8511631..8512526 13..910 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:22:23 Download gff for BS07833.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8504731..8505626 13..910 99   Minus

BS07833.5prime Sequence

919 bp (794 high quality bases) assembled on 2006-01-06

> BS07833.5prime
GAAGTTATCAGTCGACATGGGCAAGGATCGGGGCAGAGGACGTAGGAATA
ACCATTCCGGGCCATACAACAAGAGCAACTGGCGTGGTCAGAAGAAGGAT
CGCCCCCAAAACAATGGTGGCGGTCAGCGCAACAGTGCTCCACAACAGAA
ATCCACGCTGCTGGAGACCCAAGTGGGCATTACGGAGTTCACTAACCCGG
AGGCACCTGGCTTCACGGGAATACTTAAGTCTCGCTTCTCTGATTTTCAC
GTGAACGAGATTGATAGCAATGGAAAGGTTCTGGAACTGAACGATCTCAG
TGTGCCTAAAGTGGCTATTGTGGCTGTGGCCGAAAACGAACTGGACAACT
GGCGGAAAGAACTGGAGGCAGTAATCGGCCCGGAAGTTTGGCAGGATATA
GCCAATCTGGCTAAGGCCAAAAACGATCCCGCGATCGAGCAAAAGGTGGA
GATTGATGTGACCACTCTGGATAAGGAGCAGCGAACACAAGTCCACCAGA
TGATAAAACAGCTTTACAAGGGCAAGCTACTGTCCACAACCATTGGACAG
CAGCAGGCTAAGCCGAAGGTCCAGGAGGAGGCATCTTTGGAAAATAAGGA
TGCGGCTGAAGGTGAAACCTCAACCCAGAAAGACTCACAGGTGCCGGCAG
AGGAGAAGAAGACTATAAAAGTATTTAAACCAAAGCCAGGACGCGGTGAC
AAACGCTGGAGCTTTCCGGCGGATTACGTGACCTTCCTGGTGCACAAAAC
CAATTTGGTTACCAGCGATGTGGCCTCTACTTTAGCAGCGCGACTGAACT
TACGACCATCGCAGGTGAACTACAGCGGCATCAAGGACAAGCGGGCCAAA
ACCACCCAGAAGTTCTCCGTCAAGCGTCGTACACCAGAGAGCATTTTGGG
TGCAGCTCGCTCCCCACGG

BS07833.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6745-PA 2205 CG6745-RA 1..898 17..914 4465 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6745-RA 2770 CG6745-RA 83..985 17..919 4485 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8510512..8510886 323..697 1875 100 Plus
3L 28110227 3L 8510258..8510451 130..323 955 99.5 Plus
3L 28110227 3L 8510085..8510203 17..135 595 100 Plus
3L 28110227 3L 8511102..8511222 799..919 575 98.3 Plus
3L 28110227 3L 8510939..8511042 695..798 520 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:57:43 has no hits.

BS07833.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:09 Download gff for BS07833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6745-PA 1..903 17..919 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:38 Download gff for BS07833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6745-PA 1..903 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:49 Download gff for BS07833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 83..985 17..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:23:30 Download gff for BS07833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 83..985 17..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:23:30 Download gff for BS07833.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8510085..8510203 17..135 100 -> Plus
3L 8510264..8510451 136..323 100 -> Plus
3L 8510513..8510884 324..695 100 -> Plus
3L 8510940..8511042 696..798 100 -> Plus
3L 8511102..8511222 799..919 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:49 Download gff for BS07833.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8503185..8503303 17..135 100 -> Plus
arm_3L 8503364..8503551 136..323 100 -> Plus
arm_3L 8503613..8503984 324..695 100 -> Plus
arm_3L 8504040..8504142 696..798 100 -> Plus
arm_3L 8504202..8504322 799..919 98   Plus

BS07833.complete Sequence

2237 bp assembled on 2008-01-03

GenBank Submission: FJ636006

> BS07833.complete
GAAGTTATCAGTCGACATGGGCAAGGATCGGGGCAGAGGACGTAGGAATA
ACCATTCCGGGCCATACAACAAGAGCAACTGGCGTGGTCAGAAGAAGGAT
CGCCCCCAAAACAATGGTGGCGGTCAGCGCAACAGTGCTCCACAACAGAA
ATCCACGCTGCTGGAGACCCAAGTGGGCATTACGGAGTTCACTAACCCGG
AGGCACCTGGCTTCACGGGAATACTTAAGTCTCGCTTCTCTGATTTTCAC
GTGAACGAGATTGATAGCAATGGAAAGGTTCTGGAACTGAACGATCTCAG
TGTGCCTAAAGTGGCTATTGTGGCTGTGGCCGAAAACGAACTGGACAACT
GGCGGAAAGAACTGGAGGCAGTAATCGGCCCGGAAGTTTGGCAGGATATA
GCCAATCTGGCTAAGGCCAAAAACGATCCCGCGATCGAGCAAAAGGTGGA
GATTGATGTGACCACTCTGGATAAGGAGCAGCGAACACAAGTCCACCAGA
TGATAAAACAGCTTTACAAGGGCAAGCTACTGTCCACAACCATTGGACAG
CAGCAGGCTAAGCCGAAGGTCCAGGAGGAGGCATCTTTGGAAAATAAGGA
TGCGGCTGAAGGTGAAACCTCAACCCAGAAAGACTCACAGGTGCCGGCAG
AGGAGAAGAAGACTATAAAAGTATTTAAACCAAAGCCAGGACGCGGTGAC
AAACGCTGGAGCTTTCCGGCGGATTACGTGACCTTCCTGGTGCACAAAAC
CAATTTGGTTACCAGCGATGTGGCCTCTACTTTAGCAGCGCGACTGAACT
TACGACCATCGCAGGTGAACTACAGCGGCATCAAGGACAAGCGGGCCAAA
ACCACCCAGAAGTTCTCCGTCAAGCGTCGTACACCAGAGAGCATTTTGGT
TGCAGCTCGCTCCCAACGGAATGTTCATATCGGCAACTTTGGATTCGAAT
CCAATACACTGAAGCTAGGCGATTTGCAGGGCAATCGTTTTCGTATTGCC
TTGCGACACATTGCCAAGGAGAAGCGAGAAGAAATCGAGCAGGCACTGCA
ATCATTGAAGGAACGCGGCTTCATCAACTACTATGGCTTGCAGCGGTTCG
GCAACAGCGCCAGTGTCCCAACCTATGAGGTGGGTGTTGCTCTGCTCAAG
CACGATTACAAACTGGCCTGCGAACTGATCCTGAAACCCCGGGACTCGGA
TGTGGAGTTTTTGCGTCCCATACGCGAGGAGTGGTGGAAAAATCGCGACT
CCGCGGCGGCAGCTGCACAGATCTACGGCGAAAAGTTCATCGAAAAGAAG
CTGCTGGACGGCTTGGCCAGATTTGGTGAATCAGATTACTCATCAGCTCT
GCGGCAGATACCACGCAACATGCTCATGCTATATCCACATGCTTACCAAA
GCCTGATCTTCAACAGGATAGCGTCTAGACGAATTAAGGAGTTCGGCTTG
AAATTGATACCCGGGGATTTGGTTTATGTGGAGCAGGATCAGTCGGAAGC
CTCGGAAGAGCAGGCGCAGCAGGGCGAGGCCTTGGAAGAGCAAAAAGAAG
AGGAGCCTAACGATGAACCTCTGGAAGTCCCCGAAGGGGATGAAGCCATC
GAAGAGGAGTCGATTTTCAAGCGAAAGGTTCGCCCGCTCACAGCAGAAGA
CATCGCTAGCGGCAAGTACAAACTTTGCGATGTGGTCCTTCCCCTGCCTG
GACACGACATCACCTATCCCAGCAACGAGTGCGGCGCGTGGTACGAGGAA
ATGCTCGCCGAAGTGGGTCTTTCCTCGGATCAACTGAAGCACAAGGAGAA
GACATACGCATTGGCTGGCGCCTACCGCAAGATGATCATATCGTCCAGTG
ATCTCAAGTGGAGCTTTAGAATGTACAATACGCCGGAGGATACACTTATC
GCCTCCGACTGGGAGCTATTGAAGAACATTCCGGTTGCACCAGAACCAGC
TGAAGCTGAGGCCAATTACATGGCACTCCTGCTGGAGTTCTCGCTGCCCA
CGGCTGCCTATGCCACCATGTTTTTGCGAGAACTCTTAAAGCAGGACACA
TCGTCAGCATCGCAAACGCAGTTGGAGAAACAGGCAATGGCTAAGGAGGA
CAATGAAAAGAAGGCGGTAGGAACCCAGGAGGAACAAATGGAGGTGGTAA
AGGAGGTGGCCGACGAGGATGGGCAGGAAACTGAGCAGGCGGAAACTCAG
GGGGCCGAGGAGGCGGTGTAGAAGCTTTCTAGACCAT

BS07833.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6745-RA 2205 CG6745-PA 1..2205 17..2221 11025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6745-RA 2770 CG6745-RA 83..2287 17..2221 11025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8511102..8512524 799..2221 7115 100 Plus
3L 28110227 3L 8510512..8510886 323..697 1875 100 Plus
3L 28110227 3L 8510258..8510451 130..323 955 99.5 Plus
3L 28110227 3L 8510085..8510203 17..135 595 100 Plus
3L 28110227 3L 8510939..8511042 695..798 520 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:11:21 has no hits.

BS07833.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:20 Download gff for BS07833.complete
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 1..2205 17..2221 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:43 Download gff for BS07833.complete
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 48..2252 17..2221 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:25 Download gff for BS07833.complete
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 83..2287 17..2221 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:20 Download gff for BS07833.complete
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 48..2254 17..2225 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:09 Download gff for BS07833.complete
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 83..2287 17..2221 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:09 Download gff for BS07833.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8510085..8510203 17..135 100 -> Plus
3L 8510264..8510451 136..323 100 -> Plus
3L 8510513..8510884 324..695 100 -> Plus
3L 8510940..8511042 696..798 100 -> Plus
3L 8511102..8512524 799..2221 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:25 Download gff for BS07833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8503185..8503303 17..135 100 -> Plus
arm_3L 8503364..8503551 136..323 100 -> Plus
arm_3L 8503613..8503984 324..695 100 -> Plus
arm_3L 8504040..8504142 696..798 100 -> Plus
arm_3L 8504202..8505624 799..2221 100   Plus

BS07833.pep Sequence

Translation from 16 to 2220

> BS07833.pep
MGKDRGRGRRNNHSGPYNKSNWRGQKKDRPQNNGGGQRNSAPQQKSTLLE
TQVGITEFTNPEAPGFTGILKSRFSDFHVNEIDSNGKVLELNDLSVPKVA
IVAVAENELDNWRKELEAVIGPEVWQDIANLAKAKNDPAIEQKVEIDVTT
LDKEQRTQVHQMIKQLYKGKLLSTTIGQQQAKPKVQEEASLENKDAAEGE
TSTQKDSQVPAEEKKTIKVFKPKPGRGDKRWSFPADYVTFLVHKTNLVTS
DVASTLAARLNLRPSQVNYSGIKDKRAKTTQKFSVKRRTPESILVAARSQ
RNVHIGNFGFESNTLKLGDLQGNRFRIALRHIAKEKREEIEQALQSLKER
GFINYYGLQRFGNSASVPTYEVGVALLKHDYKLACELILKPRDSDVEFLR
PIREEWWKNRDSAAAAAQIYGEKFIEKKLLDGLARFGESDYSSALRQIPR
NMLMLYPHAYQSLIFNRIASRRIKEFGLKLIPGDLVYVEQDQSEASEEQA
QQGEALEEQKEEEPNDEPLEVPEGDEAIEEESIFKRKVRPLTAEDIASGK
YKLCDVVLPLPGHDITYPSNECGAWYEEMLAEVGLSSDQLKHKEKTYALA
GAYRKMIISSSDLKWSFRMYNTPEDTLIASDWELLKNIPVAPEPAEAEAN
YMALLLEFSLPTAAYATMFLRELLKQDTSSASQTQLEKQAMAKEDNEKKA
VGTQEEQMEVVKEVADEDGQETEQAETQGAEEAV*

BS07833.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6745-PA 734 CG6745-PA 1..734 1..734 3758 100 Plus