Clone BS07836 Report

Search the DGRC for BS07836

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:36
Vector:pDNR-Dual
Associated Gene/Transcriptsut2-RA
Protein status:BS07836.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07836.3prime Sequence

856 bp (788 high quality bases) assembled on 2006-01-06

> BS07836.3prime
ATGGTCTAGAAAGCTTTTAGTTCAGCTTGGAGGAAAGCCCCTGGCTCATT
AGCAGCTTCACATCCTTTGGCTCCCGGCCACGTGTCTCTGGAAGGTAACG
CCAGGTGAGCAGAAGGCAGTAGATGCACACGCACATGCACGGGATGAAGG
CAAAGGAGCTCCAGACACTCTGCAGCAATGGAAAGCACATGCCCACTAGG
AAGTTTCCGATCCACGAGAAAAGGCTGCCCATTGACATGGCCACAGGACG
AGGCGAATCCTCGAGGAGCTCTGAGCCAATGAAGTAAGCAATTGGTCCCA
GACCCAGCTGGAAACCGAGGATGAATGTTAGAATGAAGGCGGCACAGAAG
TAGGTGAGGACCGTGCTCTCTGATCTCTCCAAGAAGAAGAGCCCCAAGGA
CATGGCAAGCAGGGCCAGAGCACACATGGAGCAGGAAATCATCATTAGAG
GTCGACGCGGAAACCTGCGGATTAGTAATGGTCCCAGAAGGGATGTGCAC
AGATTGAAGCTTCCGATTCCCAGATTTAACCATGTGGCTGCTCCGTCAGA
GAAACCAGCATTAGTTAAAATAGAGAGCGAGTAGAAGAATATAGCATTGA
TGCCACTGAGTTGTTGGGTGGCCTGGAAGGAACAGACTAGCAGGAGTGGT
AGCCACAGCTCACTATTCCTTAAAACCGAGCACAAAGAACTTACTTCGGA
GCTGGACTTGGCCTCTAGAGTGGCCTTCATCTCAAGCAGTTCCTGATGCA
CCTCCTCCTCTGTGTTCCTTCCACGCAATCGGAGCAATGCTTTCTCACTG
GCGGCCGAATCTCGCTTGTGCAGGTAGAGCCACCGCGGACTCTCCGGAAA
CCACCA

BS07836.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17975-PA 1476 sut2-RA 637..1476 856..17 4200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
sut2-RA 1608 CG17975-RA 681..1521 856..16 4205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8088575..8088896 592..271 1610 100 Minus
2R 25286936 2R 8088252..8088515 856..593 1320 100 Minus
2R 25286936 2R 8088952..8089210 274..16 1295 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:17:35 has no hits.

BS07836.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:12 Download gff for BS07836.3prime
Subject Subject Range Query Range Percent Splice Strand
sut2-PA 638..1476 17..855 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:42 Download gff for BS07836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17975-PA 638..1476 17..855 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:22:50 Download gff for BS07836.3prime
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 682..1521 16..855 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:50:30 Download gff for BS07836.3prime
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 682..1521 16..855 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:50:30 Download gff for BS07836.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8088253..8088515 593..855 100 -> Minus
2R 8088575..8088896 271..592 100 -> Minus
2R 8088956..8089210 16..270 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:22:50 Download gff for BS07836.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3975758..3976020 593..855 100 -> Minus
arm_2R 3976080..3976401 271..592 100 -> Minus
arm_2R 3976461..3976715 16..270 100   Minus

BS07836.5prime Sequence

887 bp (752 high quality bases) assembled on 2006-01-06

> BS07836.5prime
GAAGTTATCAGTCGACATGGTTGTTGTAATGCACGTGACTCCTCCAAAAG
TCAATGGATGGACCCCGCTTCTGATGCTCATCTGCCTGACCGTAACGCTG
GGCACCACCATTCCAGTGGGCTATTTCTTTGGGGTTCTCAATGCCCCGGC
CGAGATCATCAAGAAGTGGTGCCAGGACATATTGGCGAACGAATACGACA
CTATCGTCACTGCCGGTCAGCTTGATATTCTATGGACTAGCATTGTGTCC
ATCTACCTGATTGGAGGCATCTGCGGATCCTGCTTCAGCGCTGTGCTTTG
CGATAAATACGGCCGTAAGGGATGTCTGGTTATCAGTAGCGTACTATTCG
TCGTTTCCGGCATCCTGTTCACCTGGTGTCGAGCAGCCAAATCGCTGGAA
ATGCTGATGACTGGCCGCTTTCTAGGCGGCATCGCCTCCGCTTTGATCTT
CACAGCTCAGCCCATGTATCTACTGGAATCCGCTCCATCGGAGCTCAGTG
GGAGCGTCGGAGTGTTCACCTGCATCGGTGTGACTGGTGGTATCCTGCTC
GCCCAGGTGGCCACTTTATCCCACTTGCTGGGGAGCGAGCGACTGTGGCC
TTATGCCTTGAGTTTCTACTCGTTATTGGTGATGGCATCGTTGGTCCTTC
TTTGGTGGTTTCCGGAGAGTCCGCGGTGGCTCTACCTGCACAAGCGAGAT
TCGGCCGCCAGTGAGAAAGCATTGCTCCGATTGCGTGGAAGGAACACAGA
GGAGGAGGTGCATCAAGAACTGCTTGAGATGAAGGCCACTCTAGAGGCCA
AGTCCAGCTCCGAAGTAGTTCTTTGTGCTCGGTTTAAAGAATAGTGAGCT
GTGGCTACAACTCCTGCTAGTCTGTTCCTCCCAGCCA

BS07836.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17975-PA 1476 sut2-RA 1..801 17..817 3980 99.8 Plus
CG17975-PA 1476 sut2-RA 819..865 833..879 185 95.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
sut2-RA 1608 CG17975-RA 40..914 12..884 4250 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8087914..8088485 315..884 2700 99 Plus
2R 25286936 2R 8087574..8087858 31..315 1425 100 Plus
Blast to na_te.dros performed on 2015-02-02 10:52:58 has no hits.

BS07836.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:13 Download gff for BS07836.5prime
Subject Subject Range Query Range Percent Splice Strand
sut2-PA 1..872 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:44 Download gff for BS07836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17975-PA 1..872 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:34:00 Download gff for BS07836.5prime
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 34..916 4..886 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:42:48 Download gff for BS07836.5prime
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 34..916 4..886 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:42:48 Download gff for BS07836.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8087575..8087858 32..315 100 -> Plus
2R 8087915..8088487 316..886 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:34:00 Download gff for BS07836.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3975080..3975363 32..315 100 -> Plus
arm_2R 3975420..3975992 316..886 98   Plus

BS07836.complete Sequence

1508 bp (1508 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ638809

> BS07836.complete
GAAGTTATCAGTCGACATGGTTGTTGTAATGCACGTGACTCCTCCAAAAG
TCAATGGATGGACCCCGCTTCTGATGCTCATCTGCCTGACCGTAACGCTG
GGCACCACCATTCCAGTGGGCTATTTCTTTGGGGTTCTCAATGCCCCGGC
CGAGATCATCAAGAAGTGGTGCCAGGACATATTGGCGAACGAATACGACA
CTATCGTCACTGCCGGTCAGCTTGATATTCTATGGACTAGCATTGTGTCC
ATCTACCTGATTGGAGGCATCTGCGGATCCTGCTTCAGCGCTGTGCTTTG
CGATAAATACGGCCGTAAGGGATGTCTGGTTATCAGTAGCGTACTATTCG
TCGTTTCCGGCATCCTGTTCACCTGGTGTCGAGCAGCCAAATCGCTGGAA
ATGCTGATGACTGGCCGCTTTCTAGGCGGCATCGCCTCCGCTTTGATCTT
CACAGCTCAGCCCATGTATCTACTGGAATCCGCTCCATCGGAGCTCAGTG
GGAGCGTCGGAGTGTTCACCTGCATCGGTGTGACTGGTGGTATCCTGCTC
GCCCAGGTGGCCACTTTATCCCACTTGCTGGGGAGCGAGCGACTGTGGCC
TTATGCCTTGAGTTTCTACTCGTTATTGGTGATGGCATCGTTGGTCCTTC
TTTGGTGGTTTCCGGAGAGTCCGCGGTGGCTCTACCTGCACAAGCGAGAT
TCGGCCGCCAGTGAGAAAGCATTGCTCCGATTGCGTGGAAGGAACACAGA
GGAGGAGGTGCATCAGGAACTGCTTGAGATGAAGGCCACTCTAGAGGCCA
AGTCCAGCTCCGAAGTAAGTTCTTTGTGCTCGGTTTTAAGGAATAGTGAG
CTGTGGCTACCACTCCTGCTAGTCTGTTCCTTCCAGGCCACCCAACAACT
CAGTGGCATCAATGCTATATTCTTCTACTCGCTCTCTATTTTAACTAATG
CTGGTTTCTCTGACGGAGCAGCCACATGGTTAAATCTGGGAATCGGAAGC
TTCAATCTGTGCACATCCCTTCTGGGACCATTACTAATCCGCAGGTTTCC
GCGTCGACCTCTAATGATGATTTCCTGCTCCATGTGTGCTCTGGCCCTGC
TTGCCATGTCCTTGGGGCTCTTCTTCTTGGAGAGATCAGAGAGCACGGTC
CTCACCTACTTCTGTGCCGCCTTCATTCTAACATTCATCCTCGGTTTCCA
GCTGGGTCTGGGACCAATTGCTTACTTCATTGGCTCAGAGCTCCTCGAGG
ATTCGCCTCGTCCTGTGGCCATGTCAATGGGCAGCCTTTTCTCGTGGATC
GGAAACTTCCTAGTGGGCATGTGCTTTCCATTGCTGCAGAGTGTCTGGAG
CTCCTTTGCCTTCATCCCGTGCATGTGCGTGTGCATCTACTGCCTTCTGC
TCACCTGGCGTTACCTTCCAGAGACACGTGGCCGGGAGCCAAAGGATGTG
AAGCTGCTAATGAGCCAGGGGCTTTCCTCCAAGCTGAACTAAAAGCTTTC
TAGACCAT

BS07836.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
sut2-RA 1476 CG17975-PA 1..1476 17..1492 7380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
sut2-RA 1608 CG17975-RA 40..1521 12..1493 7395 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8087914..8088515 315..916 3010 100 Plus
2R 25286936 2R 8088575..8088896 917..1238 1610 100 Plus
2R 25286936 2R 8087574..8087858 31..315 1425 100 Plus
2R 25286936 2R 8088952..8089210 1235..1493 1295 100 Plus
Blast to na_te.dros performed on 2014-11-27 17:03:07 has no hits.

BS07836.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:50 Download gff for BS07836.complete
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 1..1476 17..1492 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:29 Download gff for BS07836.complete
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 14..1501 4..1493 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:36 Download gff for BS07836.complete
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 45..1518 17..1490 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:51 Download gff for BS07836.complete
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 14..1501 4..1493 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:23 Download gff for BS07836.complete
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 45..1518 17..1490 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:23 Download gff for BS07836.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8088956..8089207 1239..1490 100   Plus
2R 8087575..8087858 32..315 100 -> Plus
2R 8087915..8088515 316..916 100 -> Plus
2R 8088575..8088896 917..1238 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:36 Download gff for BS07836.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3975080..3975363 32..315 100 -> Plus
arm_2R 3975420..3976020 316..916 100 -> Plus
arm_2R 3976080..3976401 917..1238 100 -> Plus
arm_2R 3976461..3976712 1239..1490 100   Plus

BS07836.pep Sequence

Translation from 16 to 1491

> BS07836.pep
MVVVMHVTPPKVNGWTPLLMLICLTVTLGTTIPVGYFFGVLNAPAEIIKK
WCQDILANEYDTIVTAGQLDILWTSIVSIYLIGGICGSCFSAVLCDKYGR
KGCLVISSVLFVVSGILFTWCRAAKSLEMLMTGRFLGGIASALIFTAQPM
YLLESAPSELSGSVGVFTCIGVTGGILLAQVATLSHLLGSERLWPYALSF
YSLLVMASLVLLWWFPESPRWLYLHKRDSAASEKALLRLRGRNTEEEVHQ
ELLEMKATLEAKSSSEVSSLCSVLRNSELWLPLLLVCSFQATQQLSGINA
IFFYSLSILTNAGFSDGAATWLNLGIGSFNLCTSLLGPLLIRRFPRRPLM
MISCSMCALALLAMSLGLFFLERSESTVLTYFCAAFILTFILGFQLGLGP
IAYFIGSELLEDSPRPVAMSMGSLFSWIGNFLVGMCFPLLQSVWSSFAFI
PCMCVCIYCLLLTWRYLPETRGREPKDVKLLMSQGLSSKLN*

BS07836.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
sut2-PA 491 CG17975-PA 1..491 1..491 2544 100 Plus
sut1-PA 507 CG8714-PA 29..506 9..490 1175 46.9 Plus
sut3-PA 476 CG17976-PA 7..475 14..490 1125 47.4 Plus
sut3-PB 439 CG17976-PB 7..438 51..490 993 46.2 Plus
CG7882-PC 516 CG7882-PC 36..508 15..490 968 40.7 Plus