Clone Sequence Records
BS07840.3prime Sequence
894 bp (762 high quality bases) assembled on 2006-01-06
> BS07840.3prime
ATGGTCTAGAAAGCTTTTATTCGGAATTGGCCTGCGTTTGCGTTTCCGTC
ACTTCCTCCTCCTCGATCTTGGCAGGAGGTTGTACTTCTGCGGGCACCAC
TTCGATCTGGCCAGCGACTTCTTCAACTTTTGGCTCCTCCACAAGTTCAG
ATTTGTTGGACATCGCGCTTAGCTTTCTGCCAACCGTGGAACCTTCCACT
GACGACGACGTGCTGATTTTGCGCGCTGCTGCTGCAAAGCTGGCGACTCC
CTCGGCGGCCAAAATGCTGGCACTGGATAAAAGTATGGAAACTTGCTCCG
CCGACGGACAACTCGTGATGATCATATCATCTGTGGAGTAACCATTGGTG
GTCAGCAGTTGTTCCAGCTTTACAAACGATTGAATGATGTTGTTTCGGAT
CGGTCTGAAGATGATGAATTCTGTATCACGATTGCTTAGGTAGAGCTGCA
TGGACCGCTGTAGCACCGCCAGCTTGGCTTTGATCAAGCGCTGCGTCTCC
TGGATTATACTGCTGATCTGCTGCGGACTGGCCCATGGACTTTGCCTTAG
AACGTAGCTGGCTTTCGTCGACTCCGGCGATTGGGGCGTGGCTGGAGTGG
ACTGCGCCAACAGACTCTGCGCCTTTTCTAGGAATGTGATGAGAGGGCCC
ACTAGCATTTGAACTGCATCCTTGATGTACTTCTCGCACACCGACTTGAG
CTGACGGTCAACTTCCTTGCGAGAGTCGAGTAAATGCTCCTTGATCTGCG
GCGTGCCCTCCAGAANGAAATTCCACAGCGCATTATTGCTACCCATCGAA
NAGAGCTGTTTGCGCTTCTGCAGCAATCCAAAGGCTGCGGTCTTCACCTT
GCTAAAGTCCAGCGAAGTTTCCCTTCACGTAAAGTCCACACGAA
BS07840.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3248-PA | 2718 | CG3248-RA | 1863..2718 | 872..17 | 4167 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog3-RA | 2973 | CG3248-RA | 1870..2747 | 894..17 | 4278 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3454359..3454858 | 395..894 | 2373 | 98.2 | Plus |
| 2L | 23513712 | 2L | 3453923..3454300 | 17..394 | 1890 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:02:47 has no hits.
BS07840.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:18 Download gff for
BS07840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3248-PA | 1843..2718 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:51 Download gff for
BS07840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3248-PA | 1843..2718 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:10:42 Download gff for
BS07840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 1870..2750 | 10..894 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:45 Download gff for
BS07840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 1870..2750 | 10..894 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:45 Download gff for
BS07840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3453920..3454300 | 10..394 | 98 | <- | Plus |
| 2L | 3454359..3454858 | 395..894 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:10:42 Download gff for
BS07840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3453920..3454300 | 10..394 | 98 | <- | Plus |
| arm_2L | 3454359..3454858 | 395..894 | 98 | | Plus |
BS07840.5prime Sequence
902 bp (744 high quality bases) assembled on 2006-01-06
> BS07840.5prime
GAAGTTATCAGTCGACATGGATGACGTCGAACGAATTCAGAGCGAGAATG
AGAATTTGCGCAAGATTCGCAATCGCCTGATGCAATGGGAGTCCAAAACG
GACCCGCTGGCGGCTCTGAGTATCCAGCAAGAGGAGCACCTGGACGTCCT
GACCAATCTGTGGCGCGACAGCGGACCATCGGCACCGGCACCGACTACGC
CCACCCAGGTGGGTCCTACCGATTCATCGGCAGCTGCAACTTCGCAAAGC
GGCGATGACATCAGACTACCTGCGGAGGGACTCCAGAACACCAATGAGTT
TCTGCTTTGGTTCGCGGACGTCAGCGCCGAGATCGAGCAACGTGGCGATG
CCGACTACCACAAATACCTGCAGCAGCTGGAGCAGCGCAAAGCGGAGTGC
TCCCACATGCTGGACCAGATCGCTGGGGCCATGGAGCGCCTGGGTGCCCT
CTGCGACGAGTACGACTTTGTGTCGCAAAAGACCAGCGCTCTGAACACGG
CCAGCGAGCAGTTGATCGAGGAGCAGGAGCGACTGCAGGAGCTGAGTCAC
GAGATTCAACGCCGTCTGCACTACTTCAGCCAGGTGGAGTTGCTCAACCA
ACGACTTCAGAGCCCCACGCTTTCGGTGGCTAGCGAAGCGTTCCGGGAGT
GCCTCAACAAGATCGACGAATGCCTAAACTACATCGAGGAGAATCCCAAA
TTCAAGGATGCGGCCGCCTACAATGTGAAGTACAGGCAGTGCCTGGCCAA
AGCCTCGGGTCTGGTGCGTAACTATGTGACGAGTGTGATAAACCAGGCAA
CCGAGGCCACGCTCCATCCCAAGAACAATATGCCGGATGCCTCCGCTGCT
CTCAAGGCACCAGATGCCGCATTCGCTCTGTACTACGGCAAATATCAAAC
GG
BS07840.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3248-PA | 2718 | CG3248-RA | 1..886 | 17..902 | 4430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:52:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog3-RA | 2973 | CG3248-RA | 30..915 | 17..902 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:52:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3456302..3456815 | 694..181 | 2570 | 100 | Minus |
| 2L | 23513712 | 2L | 3456037..3456244 | 902..695 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 3456870..3457035 | 182..17 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:52:46 has no hits.
BS07840.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:19 Download gff for
BS07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3248-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:52 Download gff for
BS07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3248-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:33:58 Download gff for
BS07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 23..915 | 9..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:42:46 Download gff for
BS07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 23..915 | 9..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:42:46 Download gff for
BS07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3456037..3456244 | 695..902 | 100 | <- | Minus |
| 2L | 3456302..3456814 | 182..694 | 100 | <- | Minus |
| 2L | 3456871..3457042 | 9..181 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:33:58 Download gff for
BS07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3456037..3456244 | 695..902 | 100 | <- | Minus |
| arm_2L | 3456302..3456814 | 182..694 | 100 | <- | Minus |
| arm_2L | 3456871..3457042 | 9..181 | 97 | | Minus |
BS07840.complete Sequence
2750 bp assembled on 2008-01-03
GenBank Submission: FJ638810
> BS07840.complete
GAAGTTATCAGTCGACATGGATGACGTCGAACGAATTCAGAGCGAGAATG
AGAATTTGCGCAAGATTCGCAATCGCCTGATGCAATGGGAGTCCAAAACG
GACCCGCTGGCGGCTCTGAGTATCCAGCAAGAGGAGCACCTGGACGTCCT
GACCAATCTGTGGCGCGACAGCGGACCATCGGCACCGGCACCGACTACGC
CCACCCAGGTGGGTCCTACCGATTCATCGGCAGCTGCAACTTCGCAAAGC
GGCGATGACATCAGACTACCTGCGGAGGGACTCCAGAACACCAATGAGTT
TCTGCTTTGGTTCGCGGACGTCAGCGCCGAGATCGAGCAACGTGGCGATG
CCGACTACCACAAATACCTGCAGCAGCTGGAGCAGCGCAAAGCGGAGTGC
TCCCACATGCTGGACCAGATCGCTGGGGCCATGGAGCGCCTGGGTGCCCT
CTGCGACGAGTACGACTTTGTGTCGCAAAAGACCAGCGCTCTGAACACGG
CCAGCGAGCAGTTGATCGAGGAGCAGGAGCGACTGCAGGAGCTGAGTCAC
GAGATTCAACGCCGTCTGCACTACTTCAGCCAGGTGGAGTTGCTCAACCA
ACGACTTCAGAGCCCCACGCTTTCGGTGGCTAGCGAAGCGTTCCGGGAGT
GCCTCAACAAGATCGACGAATGCCTAAACTACATCGAGGAGAATCCCAAA
TTCAAGGATGCGGCCGCCTACAATGTGAAGTACAGGCAGTGCCTGGCCAA
AGCCTCGGGTCTGGTGCGTAACTATGTGACGAGTGTGATAAACCAGGCAA
CCGAGGCCACGCTCCATCCCAAGAACAATATGCCGGATGCCTCCGCTGCT
CTCAAGGCACCAGATGCCGCATTCGCTCTGTACTACGGCAAATATCAAAC
GGCCGCGGCAAAAGTGAAGCGGGTCGCCCAGTTGATTGAGTCCCGGTCGG
AACACAGCCTCGACTACGCCCAACTAATGGCGGATCTTCAACAGCACTAC
TTGGCGCAAAGAGCCAGCGTTATGTCGCCAGCAGTGAATCTGTCCATACA
AAACGTTAAGGTGGCCCACAAAGGGGATCACTGCTCTCTCACCCGAAGCG
CCTGCGCCTTTTTGGTGCATGTTTGCCAGGACGAACAGCGTTTGTTCTAC
CAGTTCTTCAGCACAGGAGCGCCACACCTGACGGTTTATCTGGAGGGTCT
GTGCACCATTCTCTATGACACCATGCGACCCTTTATTATACATATTAATC
ACTTGGAAACGCTGGCGGAGATCTGCTCCATTCTACGAATTGAAATGCTG
GAGGAGCATGTCCAGCAGAATCCTGTTGCACTGGAAGCCTTTGCCACCAT
TGCGCACCAATTGCTGCAGGATGTGCAGGAGCGTTTAGTCTTCCGAGCGC
ATCTATATCTGCAGTCGGACATTCAGAACTTTAATCCCTCATCGGGAGAT
TTGGCCTACCCCGAGAAGTTGGAAATGATGGAGAGCATTGCCCTGTCCCT
TCAAGAACCCGCCCCTTTGCGCCGCTCCGATTCTCGCAACTCCATGGTTT
CCAGTGTTTCAAGTGCTGTGGAGACGGAAAGCGTGGCCACTGCCTACACG
GTGAAGCAAATGAATTCCCCGGCCGATCTGCATGGCATGTGGTACCCCAC
AGTACGTCGGACACTGGTGTGCCTCTCAAGGCTTTACCGCTGCGTGGATC
GACCCATTTTCCAAGGCCTTTCTCAGGAAGCGCTCAAGCTGTGCATCCAG
AGTGTCTCTCATGCGGCTGGCAAGATATCAGCCAATAAGACGCCAATTGA
TGGCGAGCTCTTCGAAATCAAGCATCTCCTAATTCTGCGGGAACAGATTG
CACCGTTTCGTGTGGACTTTACGGTGAAGGAAACTTCGCTGGACTTTAGC
AAGGTGAAGACCGCAGCCTTTGGATTGCTGCAGAAGCGCAAACAGCTCTT
TTCGATGGGTAGCAATAATGCGCTGTTGGAATTCCTTCTGGAGGGCACGC
CGCAGATCAAGGAGCATTTACTCGACTCTCGCAAGGAAGTTGACCGTCAG
CTCAAGTCGGTGTGCGAGAAGTACATCAAGGATGCAGTTCAAATGCTAGT
GGGCCCTCTCATCACATTCCTAGAAAAGGCGCAGAGTCTGTTGGCGCAGT
CCACTCCAGCCACGCCCCAATCGCCGGAGTCGACGAAAGCCAGCTACGTT
CTAAGGCAAAGTCCATGGGCCAGTCCGCAGCAGATCAGCAGTATAATCCA
GGAGACGCAGCGCTTGATCAAAGCCAAGCTGGCGGTGCTACAGCGGTCCA
TGCAGCTCTACCTAAGCAATCGTGATACAGAATTCATCATCTTCAGACCG
ATCCGAAACAACATCATTCAATCGTTTGTAAAGCTGGAACAACTGCTGAC
CACCAATGGTTACTCCACAGATGATATGATCATCACGAGTTGTCCGTCGG
CGGAGCAAGTTTCCATACTTTTATCCAGTGCCAGCATTTTGGCCGCCGAG
GGAGTCGCCAGCTTTGCAGCAGCAGCGCGCAAAATCAGCACGTCGTCGTC
AGTGGAAGGTTCCACGGTTGGCAGAAAGCTAAGCGCGATGTCCAACAAAT
CTGAACTTGTGGAGGAGCCAAAAGTTGAAGAAGTCGCTGGCCAGATCGAA
GTGGTGCCCGCAGAAGTACAACCTCCTGCCAAGATCGAGGAGGAGGAAGT
GACGGAAACGCAAACGCAGGCCAATTCCGAATAAAAGCTTTCTAGACCAT
BS07840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog3-RA | 2718 | CG3248-PA | 1..2718 | 17..2734 | 13590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog3-RA | 2973 | CG3248-RA | 30..2747 | 17..2734 | 13590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3454359..3455101 | 2356..1614 | 3715 | 100 | Minus |
| 2L | 23513712 | 2L | 3456302..3456815 | 694..181 | 2570 | 100 | Minus |
| 2L | 23513712 | 2L | 3455756..3456244 | 1183..695 | 2445 | 100 | Minus |
| 2L | 23513712 | 2L | 3453923..3454300 | 2734..2357 | 1890 | 100 | Minus |
| 2L | 23513712 | 2L | 3456870..3457035 | 182..17 | 830 | 100 | Minus |
| 2L | 23513712 | 2L | 3455344..3455504 | 1483..1323 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 3455564..3455703 | 1322..1183 | 700 | 100 | Minus |
| 2L | 23513712 | 2L | 3455156..3455287 | 1613..1482 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:36:43 has no hits.
BS07840.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:21 Download gff for
BS07840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 1..2718 | 17..2734 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:26 Download gff for
BS07840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 24..2739 | 17..2732 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:24 Download gff for
BS07840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 30..2745 | 17..2732 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:22 Download gff for
BS07840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 17..2744 | 9..2741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:31 Download gff for
BS07840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 30..2745 | 17..2732 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:31 Download gff for
BS07840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3455564..3455703 | 1183..1322 | 100 | <- | Minus |
| 2L | 3453925..3454300 | 2357..2732 | 100 | <- | Minus |
| 2L | 3454359..3455101 | 1614..2356 | 100 | <- | Minus |
| 2L | 3455156..3455285 | 1484..1613 | 100 | <- | Minus |
| 2L | 3455344..3455504 | 1323..1483 | 100 | <- | Minus |
| 2L | 3455757..3456244 | 695..1182 | 100 | <- | Minus |
| 2L | 3456302..3456814 | 182..694 | 100 | <- | Minus |
| 2L | 3456871..3457035 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:24 Download gff for
BS07840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3455156..3455285 | 1484..1613 | 100 | <- | Minus |
| arm_2L | 3455344..3455504 | 1323..1483 | 100 | <- | Minus |
| arm_2L | 3453925..3454300 | 2357..2732 | 100 | <- | Minus |
| arm_2L | 3454359..3455101 | 1614..2356 | 100 | <- | Minus |
| arm_2L | 3455564..3455703 | 1183..1322 | 100 | <- | Minus |
| arm_2L | 3455757..3456244 | 695..1182 | 100 | <- | Minus |
| arm_2L | 3456302..3456814 | 182..694 | 100 | <- | Minus |
| arm_2L | 3456871..3457035 | 17..181 | 100 | | Minus |
BS07840.pep Sequence
Translation from 16 to 2733
> BS07840.pep
MDDVERIQSENENLRKIRNRLMQWESKTDPLAALSIQQEEHLDVLTNLWR
DSGPSAPAPTTPTQVGPTDSSAAATSQSGDDIRLPAEGLQNTNEFLLWFA
DVSAEIEQRGDADYHKYLQQLEQRKAECSHMLDQIAGAMERLGALCDEYD
FVSQKTSALNTASEQLIEEQERLQELSHEIQRRLHYFSQVELLNQRLQSP
TLSVASEAFRECLNKIDECLNYIEENPKFKDAAAYNVKYRQCLAKASGLV
RNYVTSVINQATEATLHPKNNMPDASAALKAPDAAFALYYGKYQTAAAKV
KRVAQLIESRSEHSLDYAQLMADLQQHYLAQRASVMSPAVNLSIQNVKVA
HKGDHCSLTRSACAFLVHVCQDEQRLFYQFFSTGAPHLTVYLEGLCTILY
DTMRPFIIHINHLETLAEICSILRIEMLEEHVQQNPVALEAFATIAHQLL
QDVQERLVFRAHLYLQSDIQNFNPSSGDLAYPEKLEMMESIALSLQEPAP
LRRSDSRNSMVSSVSSAVETESVATAYTVKQMNSPADLHGMWYPTVRRTL
VCLSRLYRCVDRPIFQGLSQEALKLCIQSVSHAAGKISANKTPIDGELFE
IKHLLILREQIAPFRVDFTVKETSLDFSKVKTAAFGLLQKRKQLFSMGSN
NALLEFLLEGTPQIKEHLLDSRKEVDRQLKSVCEKYIKDAVQMLVGPLIT
FLEKAQSLLAQSTPATPQSPESTKASYVLRQSPWASPQQISSIIQETQRL
IKAKLAVLQRSMQLYLSNRDTEFIIFRPIRNNIIQSFVKLEQLLTTNGYS
TDDMIITSCPSAEQVSILLSSASILAAEGVASFAAAARKISTSSSVEGST
VGRKLSAMSNKSELVEEPKVEEVAGQIEVVPAEVQPPAKIEEEEVTETQT
QANSE*
BS07840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog3-PA | 905 | CG3248-PA | 1..905 | 1..905 | 4550 | 100 | Plus |
