Clone BS07841 Report

Search the DGRC for BS07841

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCct2-RA
Protein status:BS07841.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07841.3prime Sequence

943 bp (845 high quality bases) assembled on 2006-01-06

> BS07841.3prime
ATGGTCTAGAAAGCTTTTAGTCGCTGCGTCGCTCGTCTACGACATCCTTA
TGCTCTGGTTGCTCCGAGTAATTGAGGTTTGCTGAGGCATTCACCTTATC
AGGGCGCTTTTGTTTTCGACTAAGGGATACGCAACTACCAGACCCGTAGT
CTGGTGGCAGCTCCATGTACTCATCCTCAGAGTCTAAGTCGTCTGTTGCG
TCTGGATCGTCACCGTTTACGGAGCCATTCGGACTGCCTGGTGGGCTGAG
TGCCTGAATGATTCGGCCCTTGGACTCGTTCCAGAAGGTGTTAAGCCGCT
CCCGGCCGAACAGGAGCAGGAAGGCATCGATGAACTCGCGCGACTTCTCC
TCCCACTTGGTGATGATGTCAACCTTGACTTTGGTCAGCTCCCGCTTGCC
TCGTGTCTTCAGCTCGTCCATCTTGTTCTGCAGACGGAATTTCTTCTCGG
AGAGAAAGGAGACGTTGAGCTCCTTGGCTGAGTAGCCTCTGGCCAGGTTC
CTGCGCACATATACATCGTAGTCCTTCACGATTCGGGCCACAATGTCCGA
CGTGGACACGCCCTCAGTGCGTTCCGTGGCCACAAACATTCCCTTCGCTT
TGAGTGGAGCATATATGTCGTTGACTCCGCCAGCTCCATAGGGTATGTCA
TCGTGGGCCACAAAGTCGATTTTGTGCTCCTCGATAAACTCCTCATTTAG
CGTCCACGGAGCATTCGGAACGATCTCATCCACGTAGCGGCAGTGGCGCA
CCGCCTCGTAGCGCTCGAATCCATTCATAACCGTGCGTCCCTTCATCCTG
AGGGTCAGCTCATCATTGCACACGCCGACGATGAGATAGACGTTGGGGAA
CACATTCTTGGCCTGCATGAGTTGGCGGGCATGGCCTTGGTGGAACAGAT
CATATATGCCATCTGCATAGACCCGCACCCTGCGCGTCGTCTT

BS07841.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG18330-PA 1146 Cct2-RA 220..1146 943..17 4610 99.8 Minus
CG1049-PA 1581 Cct1-RA 1093..1238 451..306 380 90.4 Minus
CG1049-PD 1581 Cct1-RD 1093..1238 451..306 380 90.4 Minus
CG1049-PB 1581 Cct1-RB 1093..1238 451..306 380 90.4 Minus
CG1049-PC 1581 Cct1-RC 1093..1238 451..306 380 90.4 Minus
CG1049-PA 1581 Cct1-RA 602..689 942..855 190 88.6 Minus
CG1049-PD 1581 Cct1-RD 602..689 942..855 190 88.6 Minus
CG1049-PB 1581 Cct1-RB 602..689 942..855 190 88.6 Minus
CG1049-PC 1581 Cct1-RC 602..689 942..855 190 88.6 Minus
CG1049-PA 1581 Cct1-RA 955..1040 589..504 180 88.3 Minus
CG1049-PD 1581 Cct1-RD 955..1040 589..504 180 88.3 Minus
CG1049-PB 1581 Cct1-RB 955..1040 589..504 180 88.3 Minus
CG1049-PC 1581 Cct1-RC 955..1040 589..504 180 88.3 Minus
CG1049-PA 1581 Cct1-RA 748..824 796..720 135 87 Minus
CG1049-PD 1581 Cct1-RD 748..824 796..720 135 87 Minus
CG1049-PB 1581 Cct1-RB 748..824 796..720 135 87 Minus
CG1049-PC 1581 Cct1-RC 748..824 796..720 135 87 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cct2-RA 1697 CG18330-RA 624..1551 943..16 4625 99.9 Minus
Cct1-RF 2754 CG1049-RF 897..1629 942..210 1625 81.6 Minus
Cct1-RE 2564 CG1049-RE 975..1707 942..210 1625 81.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1554459..1555169 726..16 3555 100 Minus
3L 28110227 3L 1551863..1552379 726..210 1085 80.7 Minus
3L 28110227 3L 1554183..1554401 943..725 1080 99.5 Minus
3L 28110227 3L 1551584..1551801 942..725 550 83.5 Minus
Blast to na_te.dros performed on 2015-02-12 00:41:40 has no hits.

BS07841.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:20 Download gff for BS07841.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct2-PA 220..1146 17..943 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:54 Download gff for BS07841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18330-PA 220..1146 17..943 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:46:06 Download gff for BS07841.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 624..1551 16..943 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:29 Download gff for BS07841.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 624..1551 16..943 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:29 Download gff for BS07841.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1554183..1554401 725..943 99 -> Minus
3L 1554461..1555169 16..724 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:46:06 Download gff for BS07841.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1554183..1554401 725..943 99 -> Minus
arm_3L 1554461..1555169 16..724 100   Minus

BS07841.5prime Sequence

914 bp (869 high quality bases) assembled on 2006-01-06

> BS07841.5prime
GAAGTTATCAGTCGACATGGACAGAATGCCGAAAGAGGACGACGAATCTC
CAGTGTCGACGGCTCCTGCCACACCGACATCGCCGATGGAGTTTAAGATG
CTACCGCTCTTTATGGACTTTGAGGATTTTAGCATTTGCCAGCCTGCTCC
TTTCTCGTACGATGACAAGGCCATGCTGGAGCTCGAGAGATGCGACTACA
CACAGAGGATCACCTATCATATGGCCAGAGCTGGGAAGACGACGCGCAGG
GTGCGGGTCTATGCAGATGGCATATATGATCTGTTCCACCAAGGCCATGC
CCGCCAACTCATGCAGGCCAAGAATGTGTTTCCCAACGTCTATCTCATCG
TCGGCGTGTGCAATGATGAGCTGACCCTCAGGATGAAGGGACGCACGGTT
ATGAATGGATTCGAGCGCTACGAGGCGGTGCGCCACTGCCGCTACGTGGA
TGAGATCGTTCCGAATGCTCCGTGGACGCTAAATGAGGAGTTTATCGAGG
AGCACAAAATCGACTTTGTGGCCCACGATGACATACCCTATGGAGCTGGC
GGAGTCAACGACATATATGCTCCACTCAAAGCGAAGGGAATGTTTGTGGC
CACGGAACGCACTGAGGGCGTGTCCACGTCGGACATTGTGGCCCGAATCG
TGAAGGACTACGATGTATATGTGCGCAGGAACCTGGCCAGAGGCTACTCA
GCCAAGGAGCTCAACGTCTCCTTTCTCTCCGAGAAGAAATTCCGTCTGCA
GAACAAGATGGACGAGCTGAAGACACGAGGCAAGCGGGAGCTGACCAAAG
TCAAGGTTGACATCATCACCAAGTGGGAGGAGAAGTCGCGCGAGTTCATC
GATGCCTTCCTGCTCCTGTTCGGCCGGGAGCGGCTTANCACCTTTCTGGA
CGAGTCCAAGGGCC

BS07841.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG18330-PA 1146 Cct2-RA 1..878 17..894 4371 99.8 Plus
CG1049-PA 1581 Cct1-RA 1093..1238 728..873 380 90.4 Plus
CG1049-PD 1581 Cct1-RD 1093..1238 728..873 380 90.4 Plus
CG1049-PB 1581 Cct1-RB 1093..1238 728..873 380 90.4 Plus
CG1049-PC 1581 Cct1-RC 1093..1238 728..873 380 90.4 Plus
CG1049-PA 1581 Cct1-RA 602..689 237..324 190 88.6 Plus
CG1049-PD 1581 Cct1-RD 602..689 237..324 190 88.6 Plus
CG1049-PB 1581 Cct1-RB 602..689 237..324 190 88.6 Plus
CG1049-PC 1581 Cct1-RC 602..689 237..324 190 88.6 Plus
CG1049-PA 1581 Cct1-RA 955..1040 590..675 180 88.3 Plus
CG1049-PD 1581 Cct1-RD 955..1040 590..675 180 88.3 Plus
CG1049-PB 1581 Cct1-RB 955..1040 590..675 180 88.3 Plus
CG1049-PC 1581 Cct1-RC 955..1040 590..675 180 88.3 Plus
CG1049-PA 1581 Cct1-RA 748..824 383..459 135 87 Plus
CG1049-PD 1581 Cct1-RD 748..824 383..459 135 87 Plus
CG1049-PB 1581 Cct1-RB 748..824 383..459 135 87 Plus
CG1049-PC 1581 Cct1-RC 748..824 383..459 135 87 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
Cct2-RA 1697 CG18330-RA 405..1302 17..914 4434 99.7 Plus
Cct1-RF 2754 CG1049-RF 794..1540 134..880 1755 82.3 Plus
Cct1-RE 2564 CG1049-RE 872..1618 134..880 1755 82.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1554459..1554920 453..914 2239 98.9 Plus
3L 28110227 3L 1554078..1554401 131..454 1620 100 Plus
3L 28110227 3L 1551863..1552290 453..880 1045 82.9 Plus
3L 28110227 3L 1551481..1551801 134..454 720 81.6 Plus
3L 28110227 3L 1553897..1554010 17..130 570 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:35:34 has no hits.

BS07841.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:21 Download gff for BS07841.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct2-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:55 Download gff for BS07841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18330-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:11 Download gff for BS07841.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 396..1302 5..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:40 Download gff for BS07841.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 396..1302 5..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:40 Download gff for BS07841.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1553888..1554010 5..130 96 -> Plus
3L 1554078..1554401 131..454 100 -> Plus
3L 1554461..1554920 455..914 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:11 Download gff for BS07841.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1553888..1554010 5..130 96 -> Plus
arm_3L 1554078..1554401 131..454 100 -> Plus
arm_3L 1554461..1554920 455..914 99   Plus

BS07841.complete Sequence

1178 bp (1178 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636007

> BS07841.complete
GAAGTTATCAGTCGACATGGACAGAATGCCGAAAGAGGACGACGAATCTC
CAGTGTCGACGGCTCCTGCCACACCGACATCGCCGATGGAGTTTAAGATG
CTACCGCTCTTTATGGACTTTGAGGATTTTAGCATTTGCCAGCCTGCTCC
TTTCTCGTACGATGACAAGGCCATGCTGGAGCTCGAGAGATGCGACTACA
CACAGAGGATCACCTATCATATGGCCAGAGCTGGGAAGACGACGCGCAGG
GTGCGGGTCTATGCAGATGGCATATATGATCTGTTCCACCAAGGCCATGC
CCGCCAACTCATGCAGGCCAAGAATGTGTTTCCCAACGTCTATCTCATCG
TCGGCGTGTGCAATGATGAGCTGACCCTCAGGATGAAGGGACGCACGGTT
ATGAATGGATTCGAGCGCTACGAGGCGGTGCGCCACTGCCGCTACGTGGA
TGAGATCGTTCCGAATGCTCCGTGGACGCTAAATGAGGAGTTTATCGAGG
AGCACAAAATCGACTTTGTGGCCCACGATGACATACCCTATGGAGCTGGC
GGAGTCAACGACATATATGCTCCACTCAAAGCGAAGGGAATGTTTGTGGC
CACGGAACGCACTGAGGGCGTGTCCACGTCGGACATTGTGGCCCGAATCG
TGAAGGACTACGATGTATATGTGCGCAGGAACCTGGCCAGAGGCTACTCA
GCCAAGGAGCTCAACGTCTCCTTTCTCTCCGAGAAGAAATTCCGTCTGCA
GAACAAGATGGACGAGCTGAAGACACGAGGCAAGCGGGAGCTGACCAAAG
TCAAGGTTGACATCATCACCAAGTGGGAGGAGAAGTCGCGCGAGTTCATC
GATGCCTTCCTGCTCCTGTTCGGCCGGGAGCGGCTTAACACCTTCTGGAA
CGAGTCCAAGGGCCGAATCATTCAGGCACTCAGCCCACCAGGCAGTCCGA
ATGGCTCCGTAAACGGTGACGATCCAGACGCAACAGACGACTTAGACTCT
GAGGATGAGTACATGGAGCTGCCACCAGACTACGGGTCTGGTAGTTGCGT
ATCCCTTAGTCGAAAACAAAAGCGCCCTGATAAGGTGAATGCCTCAGCAA
ACCTCAATTACTCGGAGCAACCAGAGCATAAGGATGTCGTAGACGAGCGA
CGCAGCGACTAAAAGCTTTCTAGACCAT

BS07841.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
Cct2-RA 1146 CG18330-PA 1..1146 17..1162 5730 100 Plus
Cct1-RF 1581 CG1049-PF 499..1334 134..969 1795 81 Plus
Cct1-RE 1581 CG1049-PE 499..1334 134..969 1795 81 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
Cct2-RA 1697 CG18330-RA 405..1551 17..1163 5735 100 Plus
Cct1-RF 2754 CG1049-RF 794..1629 134..969 1795 81 Plus
Cct1-RE 2564 CG1049-RE 872..1707 134..969 1795 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1554459..1555169 453..1163 3555 100 Plus
3L 28110227 3L 1554078..1554401 131..454 1620 100 Plus
3L 28110227 3L 1551863..1552379 453..969 1085 80.7 Plus
3L 28110227 3L 1551481..1551801 134..454 720 81.6 Plus
3L 28110227 3L 1553897..1554010 17..130 570 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:29:24 has no hits.

BS07841.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:52 Download gff for BS07841.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 1..1146 17..1162 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:30 Download gff for BS07841.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 396..1551 5..1163 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:10 Download gff for BS07841.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 405..1548 17..1160 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:52 Download gff for BS07841.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 396..1551 5..1163 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:35 Download gff for BS07841.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 405..1548 17..1160 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:35 Download gff for BS07841.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1553897..1554010 17..130 100 -> Plus
3L 1554078..1554401 131..454 100 -> Plus
3L 1554461..1555166 455..1160 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:10 Download gff for BS07841.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1553897..1554010 17..130 100 -> Plus
arm_3L 1554078..1554401 131..454 100 -> Plus
arm_3L 1554461..1555166 455..1160 100   Plus

BS07841.pep Sequence

Translation from 16 to 1161

> BS07841.pep
MDRMPKEDDESPVSTAPATPTSPMEFKMLPLFMDFEDFSICQPAPFSYDD
KAMLELERCDYTQRITYHMARAGKTTRRVRVYADGIYDLFHQGHARQLMQ
AKNVFPNVYLIVGVCNDELTLRMKGRTVMNGFERYEAVRHCRYVDEIVPN
APWTLNEEFIEEHKIDFVAHDDIPYGAGGVNDIYAPLKAKGMFVATERTE
GVSTSDIVARIVKDYDVYVRRNLARGYSAKELNVSFLSEKKFRLQNKMDE
LKTRGKRELTKVKVDIITKWEEKSREFIDAFLLLFGRERLNTFWNESKGR
IIQALSPPGSPNGSVNGDDPDATDDLDSEDEYMELPPDYGSGSCVSLSRK
QKRPDKVNASANLNYSEQPEHKDVVDERRSD*

BS07841.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
Cct2-PA 381 CG18330-PA 1..381 1..381 2010 100 Plus
Cct1-PF 526 CG1049-PF 158..513 32..377 1360 75.3 Plus
Cct1-PE 526 CG1049-PE 158..513 32..377 1360 75.3 Plus
Cct1-PC 526 CG1049-PC 158..513 32..377 1360 75.3 Plus
Cct1-PB 526 CG1049-PB 158..513 32..377 1360 75.3 Plus