Clone Sequence Records
BS07841.3prime Sequence
943 bp (845 high quality bases) assembled on 2006-01-06
> BS07841.3prime
ATGGTCTAGAAAGCTTTTAGTCGCTGCGTCGCTCGTCTACGACATCCTTA
TGCTCTGGTTGCTCCGAGTAATTGAGGTTTGCTGAGGCATTCACCTTATC
AGGGCGCTTTTGTTTTCGACTAAGGGATACGCAACTACCAGACCCGTAGT
CTGGTGGCAGCTCCATGTACTCATCCTCAGAGTCTAAGTCGTCTGTTGCG
TCTGGATCGTCACCGTTTACGGAGCCATTCGGACTGCCTGGTGGGCTGAG
TGCCTGAATGATTCGGCCCTTGGACTCGTTCCAGAAGGTGTTAAGCCGCT
CCCGGCCGAACAGGAGCAGGAAGGCATCGATGAACTCGCGCGACTTCTCC
TCCCACTTGGTGATGATGTCAACCTTGACTTTGGTCAGCTCCCGCTTGCC
TCGTGTCTTCAGCTCGTCCATCTTGTTCTGCAGACGGAATTTCTTCTCGG
AGAGAAAGGAGACGTTGAGCTCCTTGGCTGAGTAGCCTCTGGCCAGGTTC
CTGCGCACATATACATCGTAGTCCTTCACGATTCGGGCCACAATGTCCGA
CGTGGACACGCCCTCAGTGCGTTCCGTGGCCACAAACATTCCCTTCGCTT
TGAGTGGAGCATATATGTCGTTGACTCCGCCAGCTCCATAGGGTATGTCA
TCGTGGGCCACAAAGTCGATTTTGTGCTCCTCGATAAACTCCTCATTTAG
CGTCCACGGAGCATTCGGAACGATCTCATCCACGTAGCGGCAGTGGCGCA
CCGCCTCGTAGCGCTCGAATCCATTCATAACCGTGCGTCCCTTCATCCTG
AGGGTCAGCTCATCATTGCACACGCCGACGATGAGATAGACGTTGGGGAA
CACATTCTTGGCCTGCATGAGTTGGCGGGCATGGCCTTGGTGGAACAGAT
CATATATGCCATCTGCATAGACCCGCACCCTGCGCGTCGTCTT
BS07841.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18330-PA | 1146 | Cct2-RA | 220..1146 | 943..17 | 4610 | 99.8 | Minus |
CG1049-PA | 1581 | Cct1-RA | 1093..1238 | 451..306 | 380 | 90.4 | Minus |
CG1049-PD | 1581 | Cct1-RD | 1093..1238 | 451..306 | 380 | 90.4 | Minus |
CG1049-PB | 1581 | Cct1-RB | 1093..1238 | 451..306 | 380 | 90.4 | Minus |
CG1049-PC | 1581 | Cct1-RC | 1093..1238 | 451..306 | 380 | 90.4 | Minus |
CG1049-PA | 1581 | Cct1-RA | 602..689 | 942..855 | 190 | 88.6 | Minus |
CG1049-PD | 1581 | Cct1-RD | 602..689 | 942..855 | 190 | 88.6 | Minus |
CG1049-PB | 1581 | Cct1-RB | 602..689 | 942..855 | 190 | 88.6 | Minus |
CG1049-PC | 1581 | Cct1-RC | 602..689 | 942..855 | 190 | 88.6 | Minus |
CG1049-PA | 1581 | Cct1-RA | 955..1040 | 589..504 | 180 | 88.3 | Minus |
CG1049-PD | 1581 | Cct1-RD | 955..1040 | 589..504 | 180 | 88.3 | Minus |
CG1049-PB | 1581 | Cct1-RB | 955..1040 | 589..504 | 180 | 88.3 | Minus |
CG1049-PC | 1581 | Cct1-RC | 955..1040 | 589..504 | 180 | 88.3 | Minus |
CG1049-PA | 1581 | Cct1-RA | 748..824 | 796..720 | 135 | 87 | Minus |
CG1049-PD | 1581 | Cct1-RD | 748..824 | 796..720 | 135 | 87 | Minus |
CG1049-PB | 1581 | Cct1-RB | 748..824 | 796..720 | 135 | 87 | Minus |
CG1049-PC | 1581 | Cct1-RC | 748..824 | 796..720 | 135 | 87 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct2-RA | 1697 | CG18330-RA | 624..1551 | 943..16 | 4625 | 99.9 | Minus |
Cct1-RF | 2754 | CG1049-RF | 897..1629 | 942..210 | 1625 | 81.6 | Minus |
Cct1-RE | 2564 | CG1049-RE | 975..1707 | 942..210 | 1625 | 81.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1554459..1555169 | 726..16 | 3555 | 100 | Minus |
3L | 28110227 | 3L | 1551863..1552379 | 726..210 | 1085 | 80.7 | Minus |
3L | 28110227 | 3L | 1554183..1554401 | 943..725 | 1080 | 99.5 | Minus |
3L | 28110227 | 3L | 1551584..1551801 | 942..725 | 550 | 83.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:41:40 has no hits.
BS07841.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:20 Download gff for
BS07841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-PA | 220..1146 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:54 Download gff for
BS07841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18330-PA | 220..1146 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:46:06 Download gff for
BS07841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 624..1551 | 16..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:29 Download gff for
BS07841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 624..1551 | 16..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:29 Download gff for
BS07841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1554183..1554401 | 725..943 | 99 | -> | Minus |
3L | 1554461..1555169 | 16..724 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:46:06 Download gff for
BS07841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1554183..1554401 | 725..943 | 99 | -> | Minus |
arm_3L | 1554461..1555169 | 16..724 | 100 | | Minus |
BS07841.5prime Sequence
914 bp (869 high quality bases) assembled on 2006-01-06
> BS07841.5prime
GAAGTTATCAGTCGACATGGACAGAATGCCGAAAGAGGACGACGAATCTC
CAGTGTCGACGGCTCCTGCCACACCGACATCGCCGATGGAGTTTAAGATG
CTACCGCTCTTTATGGACTTTGAGGATTTTAGCATTTGCCAGCCTGCTCC
TTTCTCGTACGATGACAAGGCCATGCTGGAGCTCGAGAGATGCGACTACA
CACAGAGGATCACCTATCATATGGCCAGAGCTGGGAAGACGACGCGCAGG
GTGCGGGTCTATGCAGATGGCATATATGATCTGTTCCACCAAGGCCATGC
CCGCCAACTCATGCAGGCCAAGAATGTGTTTCCCAACGTCTATCTCATCG
TCGGCGTGTGCAATGATGAGCTGACCCTCAGGATGAAGGGACGCACGGTT
ATGAATGGATTCGAGCGCTACGAGGCGGTGCGCCACTGCCGCTACGTGGA
TGAGATCGTTCCGAATGCTCCGTGGACGCTAAATGAGGAGTTTATCGAGG
AGCACAAAATCGACTTTGTGGCCCACGATGACATACCCTATGGAGCTGGC
GGAGTCAACGACATATATGCTCCACTCAAAGCGAAGGGAATGTTTGTGGC
CACGGAACGCACTGAGGGCGTGTCCACGTCGGACATTGTGGCCCGAATCG
TGAAGGACTACGATGTATATGTGCGCAGGAACCTGGCCAGAGGCTACTCA
GCCAAGGAGCTCAACGTCTCCTTTCTCTCCGAGAAGAAATTCCGTCTGCA
GAACAAGATGGACGAGCTGAAGACACGAGGCAAGCGGGAGCTGACCAAAG
TCAAGGTTGACATCATCACCAAGTGGGAGGAGAAGTCGCGCGAGTTCATC
GATGCCTTCCTGCTCCTGTTCGGCCGGGAGCGGCTTANCACCTTTCTGGA
CGAGTCCAAGGGCC
BS07841.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18330-PA | 1146 | Cct2-RA | 1..878 | 17..894 | 4371 | 99.8 | Plus |
CG1049-PA | 1581 | Cct1-RA | 1093..1238 | 728..873 | 380 | 90.4 | Plus |
CG1049-PD | 1581 | Cct1-RD | 1093..1238 | 728..873 | 380 | 90.4 | Plus |
CG1049-PB | 1581 | Cct1-RB | 1093..1238 | 728..873 | 380 | 90.4 | Plus |
CG1049-PC | 1581 | Cct1-RC | 1093..1238 | 728..873 | 380 | 90.4 | Plus |
CG1049-PA | 1581 | Cct1-RA | 602..689 | 237..324 | 190 | 88.6 | Plus |
CG1049-PD | 1581 | Cct1-RD | 602..689 | 237..324 | 190 | 88.6 | Plus |
CG1049-PB | 1581 | Cct1-RB | 602..689 | 237..324 | 190 | 88.6 | Plus |
CG1049-PC | 1581 | Cct1-RC | 602..689 | 237..324 | 190 | 88.6 | Plus |
CG1049-PA | 1581 | Cct1-RA | 955..1040 | 590..675 | 180 | 88.3 | Plus |
CG1049-PD | 1581 | Cct1-RD | 955..1040 | 590..675 | 180 | 88.3 | Plus |
CG1049-PB | 1581 | Cct1-RB | 955..1040 | 590..675 | 180 | 88.3 | Plus |
CG1049-PC | 1581 | Cct1-RC | 955..1040 | 590..675 | 180 | 88.3 | Plus |
CG1049-PA | 1581 | Cct1-RA | 748..824 | 383..459 | 135 | 87 | Plus |
CG1049-PD | 1581 | Cct1-RD | 748..824 | 383..459 | 135 | 87 | Plus |
CG1049-PB | 1581 | Cct1-RB | 748..824 | 383..459 | 135 | 87 | Plus |
CG1049-PC | 1581 | Cct1-RC | 748..824 | 383..459 | 135 | 87 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct2-RA | 1697 | CG18330-RA | 405..1302 | 17..914 | 4434 | 99.7 | Plus |
Cct1-RF | 2754 | CG1049-RF | 794..1540 | 134..880 | 1755 | 82.3 | Plus |
Cct1-RE | 2564 | CG1049-RE | 872..1618 | 134..880 | 1755 | 82.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1554459..1554920 | 453..914 | 2239 | 98.9 | Plus |
3L | 28110227 | 3L | 1554078..1554401 | 131..454 | 1620 | 100 | Plus |
3L | 28110227 | 3L | 1551863..1552290 | 453..880 | 1045 | 82.9 | Plus |
3L | 28110227 | 3L | 1551481..1551801 | 134..454 | 720 | 81.6 | Plus |
3L | 28110227 | 3L | 1553897..1554010 | 17..130 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:35:34 has no hits.
BS07841.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:21 Download gff for
BS07841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:19:55 Download gff for
BS07841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18330-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:11 Download gff for
BS07841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 396..1302 | 5..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:40 Download gff for
BS07841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 396..1302 | 5..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:40 Download gff for
BS07841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1553888..1554010 | 5..130 | 96 | -> | Plus |
3L | 1554078..1554401 | 131..454 | 100 | -> | Plus |
3L | 1554461..1554920 | 455..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:11 Download gff for
BS07841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1553888..1554010 | 5..130 | 96 | -> | Plus |
arm_3L | 1554078..1554401 | 131..454 | 100 | -> | Plus |
arm_3L | 1554461..1554920 | 455..914 | 99 | | Plus |
BS07841.complete Sequence
1178 bp (1178 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636007
> BS07841.complete
GAAGTTATCAGTCGACATGGACAGAATGCCGAAAGAGGACGACGAATCTC
CAGTGTCGACGGCTCCTGCCACACCGACATCGCCGATGGAGTTTAAGATG
CTACCGCTCTTTATGGACTTTGAGGATTTTAGCATTTGCCAGCCTGCTCC
TTTCTCGTACGATGACAAGGCCATGCTGGAGCTCGAGAGATGCGACTACA
CACAGAGGATCACCTATCATATGGCCAGAGCTGGGAAGACGACGCGCAGG
GTGCGGGTCTATGCAGATGGCATATATGATCTGTTCCACCAAGGCCATGC
CCGCCAACTCATGCAGGCCAAGAATGTGTTTCCCAACGTCTATCTCATCG
TCGGCGTGTGCAATGATGAGCTGACCCTCAGGATGAAGGGACGCACGGTT
ATGAATGGATTCGAGCGCTACGAGGCGGTGCGCCACTGCCGCTACGTGGA
TGAGATCGTTCCGAATGCTCCGTGGACGCTAAATGAGGAGTTTATCGAGG
AGCACAAAATCGACTTTGTGGCCCACGATGACATACCCTATGGAGCTGGC
GGAGTCAACGACATATATGCTCCACTCAAAGCGAAGGGAATGTTTGTGGC
CACGGAACGCACTGAGGGCGTGTCCACGTCGGACATTGTGGCCCGAATCG
TGAAGGACTACGATGTATATGTGCGCAGGAACCTGGCCAGAGGCTACTCA
GCCAAGGAGCTCAACGTCTCCTTTCTCTCCGAGAAGAAATTCCGTCTGCA
GAACAAGATGGACGAGCTGAAGACACGAGGCAAGCGGGAGCTGACCAAAG
TCAAGGTTGACATCATCACCAAGTGGGAGGAGAAGTCGCGCGAGTTCATC
GATGCCTTCCTGCTCCTGTTCGGCCGGGAGCGGCTTAACACCTTCTGGAA
CGAGTCCAAGGGCCGAATCATTCAGGCACTCAGCCCACCAGGCAGTCCGA
ATGGCTCCGTAAACGGTGACGATCCAGACGCAACAGACGACTTAGACTCT
GAGGATGAGTACATGGAGCTGCCACCAGACTACGGGTCTGGTAGTTGCGT
ATCCCTTAGTCGAAAACAAAAGCGCCCTGATAAGGTGAATGCCTCAGCAA
ACCTCAATTACTCGGAGCAACCAGAGCATAAGGATGTCGTAGACGAGCGA
CGCAGCGACTAAAAGCTTTCTAGACCAT
BS07841.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:29:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct2-RA | 1146 | CG18330-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Cct1-RF | 1581 | CG1049-PF | 499..1334 | 134..969 | 1795 | 81 | Plus |
Cct1-RE | 1581 | CG1049-PE | 499..1334 | 134..969 | 1795 | 81 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct2-RA | 1697 | CG18330-RA | 405..1551 | 17..1163 | 5735 | 100 | Plus |
Cct1-RF | 2754 | CG1049-RF | 794..1629 | 134..969 | 1795 | 81 | Plus |
Cct1-RE | 2564 | CG1049-RE | 872..1707 | 134..969 | 1795 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1554459..1555169 | 453..1163 | 3555 | 100 | Plus |
3L | 28110227 | 3L | 1554078..1554401 | 131..454 | 1620 | 100 | Plus |
3L | 28110227 | 3L | 1551863..1552379 | 453..969 | 1085 | 80.7 | Plus |
3L | 28110227 | 3L | 1551481..1551801 | 134..454 | 720 | 81.6 | Plus |
3L | 28110227 | 3L | 1553897..1554010 | 17..130 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:29:24 has no hits.
BS07841.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:52 Download gff for
BS07841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 1..1146 | 17..1162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:30 Download gff for
BS07841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 396..1551 | 5..1163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:10 Download gff for
BS07841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 405..1548 | 17..1160 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:52 Download gff for
BS07841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 396..1551 | 5..1163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:35 Download gff for
BS07841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 405..1548 | 17..1160 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:35 Download gff for
BS07841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1553897..1554010 | 17..130 | 100 | -> | Plus |
3L | 1554078..1554401 | 131..454 | 100 | -> | Plus |
3L | 1554461..1555166 | 455..1160 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:10 Download gff for
BS07841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1553897..1554010 | 17..130 | 100 | -> | Plus |
arm_3L | 1554078..1554401 | 131..454 | 100 | -> | Plus |
arm_3L | 1554461..1555166 | 455..1160 | 100 | | Plus |
BS07841.pep Sequence
Translation from 16 to 1161
> BS07841.pep
MDRMPKEDDESPVSTAPATPTSPMEFKMLPLFMDFEDFSICQPAPFSYDD
KAMLELERCDYTQRITYHMARAGKTTRRVRVYADGIYDLFHQGHARQLMQ
AKNVFPNVYLIVGVCNDELTLRMKGRTVMNGFERYEAVRHCRYVDEIVPN
APWTLNEEFIEEHKIDFVAHDDIPYGAGGVNDIYAPLKAKGMFVATERTE
GVSTSDIVARIVKDYDVYVRRNLARGYSAKELNVSFLSEKKFRLQNKMDE
LKTRGKRELTKVKVDIITKWEEKSREFIDAFLLLFGRERLNTFWNESKGR
IIQALSPPGSPNGSVNGDDPDATDDLDSEDEYMELPPDYGSGSCVSLSRK
QKRPDKVNASANLNYSEQPEHKDVVDERRSD*
BS07841.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct2-PA | 381 | CG18330-PA | 1..381 | 1..381 | 2010 | 100 | Plus |
Cct1-PF | 526 | CG1049-PF | 158..513 | 32..377 | 1360 | 75.3 | Plus |
Cct1-PE | 526 | CG1049-PE | 158..513 | 32..377 | 1360 | 75.3 | Plus |
Cct1-PC | 526 | CG1049-PC | 158..513 | 32..377 | 1360 | 75.3 | Plus |
Cct1-PB | 526 | CG1049-PB | 158..513 | 32..377 | 1360 | 75.3 | Plus |