Clone Sequence Records
BS07847.3prime Sequence
893 bp (819 high quality bases) assembled on 2006-01-06
> BS07847.3prime
ATGGTCTAGAAAGCTTCTAGGACATGTTCAGGATGATGGCGCGGGTAAAG
TCCTGCGTGGTCGATTGTCCGCCCAGATCCTTAGTACGCACCTTGCCATC
GTTCAGCACCTTGTTGATGGCATTCTGGATGATCTCGCCGTAGGTGGGCA
GGTTGATGTGGCGCAACAGCTTCACGCCGCAGAGCAGCATGGCAGTGGGA
TTAGCCACGTTCTTGCCCACGGCCTCGGCGAAGGTGTGACGTGCACCCGG
CTCAAAGACGACGGATTCCGAGGAGTAGGAGGCACCAGCAACGACACCAG
CACCGCCCACGAGACCACTGGCCAGATTGTCCACAATGGCACCATAGAGA
TTGGGGGTGACCATCACGTCGAACTGGTTGGGATTGGAAACCATCTGCAT
GGTCGTGTTGTCCACGATCATCTTCTCAAACTGGATGCGCGGATAGAGCC
GGGAAACCTCTTCGCAGGAGCGTAGGAAGAGACCGTCGCCCAACTTCATG
ATATTCGCCTTGTGCACGGCGGTGACCTTCTTGCGCTGATTCTTCGTCGC
ATAGTCGAAGGCGAACTTGGCAATGCGCATGGACTTTTTGGCGGTGATAA
TCTTCAGGCACTCCACAATGCCGGGCACCGACTCGTGCTCCAACGCCGAA
TACTCGCCCTCCGTCTGCTCGCGAATAATCACCGTGTCGATGTTGGTGTG
GCGGGTCTTGACACCGGGCAAGCTGCGCACATGCACCACATTGGCGTAGA
GGTCCAGGTCGTTGCGAAGCTTCATGTTAAGGGTCTGCAGGTCACCCACA
TTGCTGTAGTCGGGTGTGGCCAAAACGCCCTTAATGCACACTTTGTTTTT
CTGAATGGATGCCACCACATCCTCCAGTTTGGCACTAAGCACG
BS07847.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6439-PA | 1113 | CG6439-RA | 237..1113 | 893..17 | 4385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6439-RB | 1625 | CG6439-RB | 586..1463 | 893..16 | 4390 | 100 | Minus |
CG6439-RA | 1861 | CG6439-RA | 388..1265 | 893..16 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22017340..22017941 | 247..848 | 2935 | 99.2 | Plus |
3R | 32079331 | 3R | 22016987..22017219 | 16..248 | 1165 | 100 | Plus |
3R | 32079331 | 3R | 22017979..22018043 | 829..893 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:02:45 has no hits.
BS07847.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:33 Download gff for
BS07847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6439-PA | 237..1113 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:13 Download gff for
BS07847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6439-PA | 237..1113 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:10:40 Download gff for
BS07847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6439-RA | 388..1265 | 16..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:42 Download gff for
BS07847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6439-RA | 388..1265 | 16..893 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:42 Download gff for
BS07847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22016987..22017218 | 16..247 | 100 | <- | Plus |
3R | 22017341..22017922 | 248..829 | 100 | <- | Plus |
3R | 22017980..22018043 | 830..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:10:40 Download gff for
BS07847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17842709..17842940 | 16..247 | 100 | <- | Plus |
arm_3R | 17843063..17843644 | 248..829 | 100 | <- | Plus |
arm_3R | 17843702..17843765 | 830..893 | 100 | | Plus |
BS07847.5prime Sequence
918 bp (861 high quality bases) assembled on 2006-01-06
> BS07847.5prime
GAAGTTATCAGTCGACATGTCGATGCTGGCGAGAACAGTTGGACGGACGT
TCATGCAGGCTGCGGCAGCACGTAGTCTGCACACCACGTCGACGCTACGG
GCTACGGATAACTACGGCGCCAACAGGACCACCTGCACACTGATTCCCGG
CGACGGTGTGGGTCCCGAGCTGGTCTACTCCCTCCAGGAGGTCTTCAAGG
CAGCCAGCGTTCCCGTGGACTTCGAGTGCTACTTCCTTTCCGAAATCAAT
CCCGTGCTTAGTGCCAAACTGGAGGATGTGGTGGCATCCATTCAGAAAAA
CAAAGTGTGCATTAAGGGCGTTTTGGCCACACCCGACTACAGCAATGTGG
GTGACCTGCAGACCCTTAACATGAAGCTTCGCAACGACCTGGACCTCTAC
GCCAATGTGGTGCATGTGCGCAGCTTGCCCGGTGTCAAGACCCGCCACAC
CAACATCGACACGGTGATTATTCGCGAGCAGACGGAGGGCGAGTATTCGG
CGTTGGAGCACGAGTCGGTGCCCGGCATTGTGGAGTGCCTGAAGATTATC
ACCGCCAAAAAGTCCATGCGCATTGCCAAGTTCGCCTTCGACTATGCGAC
GAAGAATCAGCGCAAGAAGGTCACCGCCGTGCACAAGGCGAATATCATGA
AGTTGGGCGACGGTCTCTTCCTACGCTCCTGCGAAGAGGTTTCCCGGCTC
TATCCGCGCATCCAGTTTGAGAAGATGATCGTGGACAACACGACCATGCA
GATGGTTTCCAATCCCAACCAGTTCGACGTGATGGTCACCCCCAATCTCT
ATGGTGCCATTGTGGACAATCTGGCCAGTGGTCTCGTGGGCGGTGCTGGT
GTCGTTGCTGGTGCCTCCTACTCCTCGGAATCCGTCGTCTTTGAGCCGGG
TGCACGTCACACCTTCGC
BS07847.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6439-PA | 1113 | CG6439-RA | 1..902 | 17..918 | 4510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6439-RB | 1625 | CG6439-RB | 350..1251 | 17..918 | 4510 | 100 | Plus |
CG6439-RA | 1861 | CG6439-RA | 152..1053 | 17..918 | 4510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:55:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22017340..22017941 | 899..298 | 2935 | 99.2 | Minus |
3R | 32079331 | 3R | 22017979..22018098 | 317..198 | 600 | 100 | Minus |
3R | 32079331 | 3R | 22018619..22018717 | 204..106 | 480 | 99 | Minus |
3R | 32079331 | 3R | 22018779..22018829 | 107..57 | 255 | 100 | Minus |
3R | 32079331 | 3R | 22018991..22019033 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:55:03 has no hits.
BS07847.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:34 Download gff for
BS07847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6439-PA | 1..902 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:15 Download gff for
BS07847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6439-PA | 1..902 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:31 Download gff for
BS07847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6439-RA | 144..1053 | 7..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:19:26 Download gff for
BS07847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6439-RA | 144..1053 | 7..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:19:26 Download gff for
BS07847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22017199..22017218 | 899..918 | 100 | <- | Minus |
3R | 22017341..22017922 | 317..898 | 100 | <- | Minus |
3R | 22017980..22018096 | 200..316 | 100 | <- | Minus |
3R | 22018624..22018716 | 107..199 | 100 | <- | Minus |
3R | 22018780..22018827 | 59..106 | 100 | <- | Minus |
3R | 22018992..22019041 | 7..58 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:31 Download gff for
BS07847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17844346..17844438 | 107..199 | 100 | <- | Minus |
arm_3R | 17844502..17844549 | 59..106 | 100 | <- | Minus |
arm_3R | 17844714..17844763 | 7..58 | 92 | | Minus |
arm_3R | 17843702..17843818 | 200..316 | 100 | <- | Minus |
arm_3R | 17842921..17842940 | 899..918 | 100 | <- | Minus |
arm_3R | 17843063..17843644 | 317..898 | 100 | <- | Minus |
BS07847.complete Sequence
1145 bp (1145 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ638811
> BS07847.complete
GAAGTTATCAGTCGACATGTCGATGCTGGCGAGAACAGTTGGACGGACGT
TCATGCAGGCTGCGGCAGCACGTAGTCTGCACACCACGTCGACGCTACGG
GCTACGGATAACTACGGCGCCAACAGGACCACCTGCACACTGATTCCCGG
CGACGGTGTGGGTCCCGAGCTGGTCTACTCCCTCCAGGAGGTCTTCAAGG
CAGCCAGCGTTCCCGTGGACTTCGAGTGCTACTTCCTTTCCGAAATCAAT
CCCGTGCTTAGTGCCAAACTGGAGGATGTGGTGGCATCCATTCAGAAAAA
CAAAGTGTGCATTAAGGGCGTTTTGGCCACACCCGACTACAGCAATGTGG
GTGACCTGCAGACCCTTAACATGAAGCTTCGCAACGACCTGGACCTCTAC
GCCAATGTGGTGCATGTGCGCAGCTTGCCCGGTGTCAAGACCCGCCACAC
CAACATCGACACGGTGATTATTCGCGAGCAGACGGAGGGCGAGTATTCGG
CGTTGGAGCACGAGTCGGTGCCCGGCATTGTGGAGTGCCTGAAGATTATC
ACCGCCAAAAAGTCCATGCGCATTGCCAAGTTCGCCTTCGACTATGCGAC
GAAGAATCAGCGCAAGAAGGTCACCGCCGTGCACAAGGCGAATATCATGA
AGTTGGGCGACGGTCTCTTCCTACGCTCCTGCGAAGAGGTTTCCCGGCTC
TATCCGCGCATCCAGTTTGAGAAGATGATCGTGGACAACACGACCATGCA
GATGGTTTCCAATCCCAACCAGTTCGACGTGATGGTCACCCCCAATCTCT
ATGGTGCCATTGTGGACAATCTGGCCAGTGGTCTCGTGGGCGGTGCTGGT
GTCGTTGCTGGTGCCTCCTACTCCTCGGAATCCGTCGTCTTTGAGCCGGG
TGCACGTCACACCTTCGCCGAGGCCGTGGGCAAGAACGTGGCTAATCCCA
CTGCCATGCTGCTCTGCGGCGTGAAGCTGTTGCGCCACATCAACCTGCCC
ACCTACGGCGAGATCATCCAGAATGCCATCAACAAGGTGCTGAACGATGG
CAAGGTGCGTACTAAGGATCTGGGCGGACAATCGACCACGCAGGACTTTA
CCCGCGCCATCATCCTGAACATGTCCTAGAAGCTTTCTAGACCAT
BS07847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6439-RB | 1113 | CG6439-PB | 1..1113 | 17..1129 | 5565 | 100 | Plus |
CG6439-RA | 1113 | CG6439-PA | 1..1113 | 17..1129 | 5565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6439-RB | 1625 | CG6439-RB | 350..1463 | 17..1130 | 5570 | 100 | Plus |
CG6439-RA | 1861 | CG6439-RA | 152..1265 | 17..1130 | 5570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22017340..22017941 | 899..298 | 2935 | 99.2 | Minus |
3R | 32079331 | 3R | 22016987..22017219 | 1130..898 | 1165 | 100 | Minus |
3R | 32079331 | 3R | 22017979..22018098 | 317..198 | 600 | 100 | Minus |
3R | 32079331 | 3R | 22018619..22018717 | 204..106 | 480 | 99 | Minus |
3R | 32079331 | 3R | 22018779..22018829 | 107..57 | 255 | 100 | Minus |
3R | 32079331 | 3R | 22018991..22019033 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:44:43 has no hits.
BS07847.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:53 Download gff for
BS07847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6439-RA | 1..1113 | 17..1129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:32 Download gff for
BS07847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6439-RA | 342..1463 | 7..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:22 Download gff for
BS07847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6439-RA | 152..1264 | 17..1129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:53 Download gff for
BS07847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6439-RA | 342..1463 | 7..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:45 Download gff for
BS07847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6439-RA | 152..1264 | 17..1129 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:45 Download gff for
BS07847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22017341..22017922 | 317..898 | 100 | <- | Minus |
3R | 22016988..22017218 | 899..1129 | 100 | <- | Minus |
3R | 22017980..22018096 | 200..316 | 100 | <- | Minus |
3R | 22018624..22018716 | 107..199 | 100 | <- | Minus |
3R | 22018780..22018827 | 59..106 | 100 | <- | Minus |
3R | 22018992..22019033 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:22 Download gff for
BS07847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17842710..17842940 | 899..1129 | 100 | <- | Minus |
arm_3R | 17843063..17843644 | 317..898 | 100 | <- | Minus |
arm_3R | 17843702..17843818 | 200..316 | 100 | <- | Minus |
arm_3R | 17844346..17844438 | 107..199 | 100 | <- | Minus |
arm_3R | 17844502..17844549 | 59..106 | 100 | <- | Minus |
arm_3R | 17844714..17844755 | 17..58 | 100 | | Minus |
BS07847.pep Sequence
Translation from 16 to 1128
> BS07847.pep
MSMLARTVGRTFMQAAAARSLHTTSTLRATDNYGANRTTCTLIPGDGVGP
ELVYSLQEVFKAASVPVDFECYFLSEINPVLSAKLEDVVASIQKNKVCIK
GVLATPDYSNVGDLQTLNMKLRNDLDLYANVVHVRSLPGVKTRHTNIDTV
IIREQTEGEYSALEHESVPGIVECLKIITAKKSMRIAKFAFDYATKNQRK
KVTAVHKANIMKLGDGLFLRSCEEVSRLYPRIQFEKMIVDNTTMQMVSNP
NQFDVMVTPNLYGAIVDNLASGLVGGAGVVAGASYSSESVVFEPGARHTF
AEAVGKNVANPTAMLLCGVKLLRHINLPTYGEIIQNAINKVLNDGKVRTK
DLGGQSTTQDFTRAIILNMS*
BS07847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6439-PB | 370 | CG6439-PB | 1..370 | 1..370 | 1874 | 100 | Plus |
CG6439-PA | 370 | CG6439-PA | 1..370 | 1..370 | 1874 | 100 | Plus |
CG5028-PC | 392 | CG5028-PC | 35..387 | 22..370 | 791 | 43.7 | Plus |
CG5028-PD | 393 | CG5028-PD | 35..387 | 22..370 | 791 | 43.7 | Plus |
CG5028-PB | 402 | CG5028-PB | 35..387 | 22..370 | 791 | 43.7 | Plus |