Clone BS07847 Report

Search the DGRC for BS07847

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG6439-RA
Protein status:BS07847.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07847.3prime Sequence

893 bp (819 high quality bases) assembled on 2006-01-06

> BS07847.3prime
ATGGTCTAGAAAGCTTCTAGGACATGTTCAGGATGATGGCGCGGGTAAAG
TCCTGCGTGGTCGATTGTCCGCCCAGATCCTTAGTACGCACCTTGCCATC
GTTCAGCACCTTGTTGATGGCATTCTGGATGATCTCGCCGTAGGTGGGCA
GGTTGATGTGGCGCAACAGCTTCACGCCGCAGAGCAGCATGGCAGTGGGA
TTAGCCACGTTCTTGCCCACGGCCTCGGCGAAGGTGTGACGTGCACCCGG
CTCAAAGACGACGGATTCCGAGGAGTAGGAGGCACCAGCAACGACACCAG
CACCGCCCACGAGACCACTGGCCAGATTGTCCACAATGGCACCATAGAGA
TTGGGGGTGACCATCACGTCGAACTGGTTGGGATTGGAAACCATCTGCAT
GGTCGTGTTGTCCACGATCATCTTCTCAAACTGGATGCGCGGATAGAGCC
GGGAAACCTCTTCGCAGGAGCGTAGGAAGAGACCGTCGCCCAACTTCATG
ATATTCGCCTTGTGCACGGCGGTGACCTTCTTGCGCTGATTCTTCGTCGC
ATAGTCGAAGGCGAACTTGGCAATGCGCATGGACTTTTTGGCGGTGATAA
TCTTCAGGCACTCCACAATGCCGGGCACCGACTCGTGCTCCAACGCCGAA
TACTCGCCCTCCGTCTGCTCGCGAATAATCACCGTGTCGATGTTGGTGTG
GCGGGTCTTGACACCGGGCAAGCTGCGCACATGCACCACATTGGCGTAGA
GGTCCAGGTCGTTGCGAAGCTTCATGTTAAGGGTCTGCAGGTCACCCACA
TTGCTGTAGTCGGGTGTGGCCAAAACGCCCTTAATGCACACTTTGTTTTT
CTGAATGGATGCCACCACATCCTCCAGTTTGGCACTAAGCACG

BS07847.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6439-PA 1113 CG6439-RA 237..1113 893..17 4385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6439-RB 1625 CG6439-RB 586..1463 893..16 4390 100 Minus
CG6439-RA 1861 CG6439-RA 388..1265 893..16 4390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22017340..22017941 247..848 2935 99.2 Plus
3R 32079331 3R 22016987..22017219 16..248 1165 100 Plus
3R 32079331 3R 22017979..22018043 829..893 325 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:02:45 has no hits.

BS07847.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:33 Download gff for BS07847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6439-PA 237..1113 17..893 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:13 Download gff for BS07847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6439-PA 237..1113 17..893 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:10:40 Download gff for BS07847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6439-RA 388..1265 16..893 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:42 Download gff for BS07847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6439-RA 388..1265 16..893 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:42 Download gff for BS07847.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22016987..22017218 16..247 100 <- Plus
3R 22017341..22017922 248..829 100 <- Plus
3R 22017980..22018043 830..893 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:10:40 Download gff for BS07847.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17842709..17842940 16..247 100 <- Plus
arm_3R 17843063..17843644 248..829 100 <- Plus
arm_3R 17843702..17843765 830..893 100   Plus

BS07847.5prime Sequence

918 bp (861 high quality bases) assembled on 2006-01-06

> BS07847.5prime
GAAGTTATCAGTCGACATGTCGATGCTGGCGAGAACAGTTGGACGGACGT
TCATGCAGGCTGCGGCAGCACGTAGTCTGCACACCACGTCGACGCTACGG
GCTACGGATAACTACGGCGCCAACAGGACCACCTGCACACTGATTCCCGG
CGACGGTGTGGGTCCCGAGCTGGTCTACTCCCTCCAGGAGGTCTTCAAGG
CAGCCAGCGTTCCCGTGGACTTCGAGTGCTACTTCCTTTCCGAAATCAAT
CCCGTGCTTAGTGCCAAACTGGAGGATGTGGTGGCATCCATTCAGAAAAA
CAAAGTGTGCATTAAGGGCGTTTTGGCCACACCCGACTACAGCAATGTGG
GTGACCTGCAGACCCTTAACATGAAGCTTCGCAACGACCTGGACCTCTAC
GCCAATGTGGTGCATGTGCGCAGCTTGCCCGGTGTCAAGACCCGCCACAC
CAACATCGACACGGTGATTATTCGCGAGCAGACGGAGGGCGAGTATTCGG
CGTTGGAGCACGAGTCGGTGCCCGGCATTGTGGAGTGCCTGAAGATTATC
ACCGCCAAAAAGTCCATGCGCATTGCCAAGTTCGCCTTCGACTATGCGAC
GAAGAATCAGCGCAAGAAGGTCACCGCCGTGCACAAGGCGAATATCATGA
AGTTGGGCGACGGTCTCTTCCTACGCTCCTGCGAAGAGGTTTCCCGGCTC
TATCCGCGCATCCAGTTTGAGAAGATGATCGTGGACAACACGACCATGCA
GATGGTTTCCAATCCCAACCAGTTCGACGTGATGGTCACCCCCAATCTCT
ATGGTGCCATTGTGGACAATCTGGCCAGTGGTCTCGTGGGCGGTGCTGGT
GTCGTTGCTGGTGCCTCCTACTCCTCGGAATCCGTCGTCTTTGAGCCGGG
TGCACGTCACACCTTCGC

BS07847.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6439-PA 1113 CG6439-RA 1..902 17..918 4510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6439-RB 1625 CG6439-RB 350..1251 17..918 4510 100 Plus
CG6439-RA 1861 CG6439-RA 152..1053 17..918 4510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22017340..22017941 899..298 2935 99.2 Minus
3R 32079331 3R 22017979..22018098 317..198 600 100 Minus
3R 32079331 3R 22018619..22018717 204..106 480 99 Minus
3R 32079331 3R 22018779..22018829 107..57 255 100 Minus
3R 32079331 3R 22018991..22019033 59..17 215 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:55:03 has no hits.

BS07847.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:34 Download gff for BS07847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6439-PA 1..902 17..918 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:15 Download gff for BS07847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6439-PA 1..902 17..918 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:31 Download gff for BS07847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6439-RA 144..1053 7..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:19:26 Download gff for BS07847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6439-RA 144..1053 7..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:19:26 Download gff for BS07847.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22017199..22017218 899..918 100 <- Minus
3R 22017341..22017922 317..898 100 <- Minus
3R 22017980..22018096 200..316 100 <- Minus
3R 22018624..22018716 107..199 100 <- Minus
3R 22018780..22018827 59..106 100 <- Minus
3R 22018992..22019041 7..58 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:31 Download gff for BS07847.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17844346..17844438 107..199 100 <- Minus
arm_3R 17844502..17844549 59..106 100 <- Minus
arm_3R 17844714..17844763 7..58 92   Minus
arm_3R 17843702..17843818 200..316 100 <- Minus
arm_3R 17842921..17842940 899..918 100 <- Minus
arm_3R 17843063..17843644 317..898 100 <- Minus

BS07847.complete Sequence

1145 bp (1145 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ638811

> BS07847.complete
GAAGTTATCAGTCGACATGTCGATGCTGGCGAGAACAGTTGGACGGACGT
TCATGCAGGCTGCGGCAGCACGTAGTCTGCACACCACGTCGACGCTACGG
GCTACGGATAACTACGGCGCCAACAGGACCACCTGCACACTGATTCCCGG
CGACGGTGTGGGTCCCGAGCTGGTCTACTCCCTCCAGGAGGTCTTCAAGG
CAGCCAGCGTTCCCGTGGACTTCGAGTGCTACTTCCTTTCCGAAATCAAT
CCCGTGCTTAGTGCCAAACTGGAGGATGTGGTGGCATCCATTCAGAAAAA
CAAAGTGTGCATTAAGGGCGTTTTGGCCACACCCGACTACAGCAATGTGG
GTGACCTGCAGACCCTTAACATGAAGCTTCGCAACGACCTGGACCTCTAC
GCCAATGTGGTGCATGTGCGCAGCTTGCCCGGTGTCAAGACCCGCCACAC
CAACATCGACACGGTGATTATTCGCGAGCAGACGGAGGGCGAGTATTCGG
CGTTGGAGCACGAGTCGGTGCCCGGCATTGTGGAGTGCCTGAAGATTATC
ACCGCCAAAAAGTCCATGCGCATTGCCAAGTTCGCCTTCGACTATGCGAC
GAAGAATCAGCGCAAGAAGGTCACCGCCGTGCACAAGGCGAATATCATGA
AGTTGGGCGACGGTCTCTTCCTACGCTCCTGCGAAGAGGTTTCCCGGCTC
TATCCGCGCATCCAGTTTGAGAAGATGATCGTGGACAACACGACCATGCA
GATGGTTTCCAATCCCAACCAGTTCGACGTGATGGTCACCCCCAATCTCT
ATGGTGCCATTGTGGACAATCTGGCCAGTGGTCTCGTGGGCGGTGCTGGT
GTCGTTGCTGGTGCCTCCTACTCCTCGGAATCCGTCGTCTTTGAGCCGGG
TGCACGTCACACCTTCGCCGAGGCCGTGGGCAAGAACGTGGCTAATCCCA
CTGCCATGCTGCTCTGCGGCGTGAAGCTGTTGCGCCACATCAACCTGCCC
ACCTACGGCGAGATCATCCAGAATGCCATCAACAAGGTGCTGAACGATGG
CAAGGTGCGTACTAAGGATCTGGGCGGACAATCGACCACGCAGGACTTTA
CCCGCGCCATCATCCTGAACATGTCCTAGAAGCTTTCTAGACCAT

BS07847.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6439-RB 1113 CG6439-PB 1..1113 17..1129 5565 100 Plus
CG6439-RA 1113 CG6439-PA 1..1113 17..1129 5565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6439-RB 1625 CG6439-RB 350..1463 17..1130 5570 100 Plus
CG6439-RA 1861 CG6439-RA 152..1265 17..1130 5570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22017340..22017941 899..298 2935 99.2 Minus
3R 32079331 3R 22016987..22017219 1130..898 1165 100 Minus
3R 32079331 3R 22017979..22018098 317..198 600 100 Minus
3R 32079331 3R 22018619..22018717 204..106 480 99 Minus
3R 32079331 3R 22018779..22018829 107..57 255 100 Minus
3R 32079331 3R 22018991..22019033 59..17 215 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:44:43 has no hits.

BS07847.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:53 Download gff for BS07847.complete
Subject Subject Range Query Range Percent Splice Strand
CG6439-RA 1..1113 17..1129 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:32 Download gff for BS07847.complete
Subject Subject Range Query Range Percent Splice Strand
CG6439-RA 342..1463 7..1130 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:22 Download gff for BS07847.complete
Subject Subject Range Query Range Percent Splice Strand
CG6439-RA 152..1264 17..1129 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:53 Download gff for BS07847.complete
Subject Subject Range Query Range Percent Splice Strand
CG6439-RA 342..1463 7..1130 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:45 Download gff for BS07847.complete
Subject Subject Range Query Range Percent Splice Strand
CG6439-RA 152..1264 17..1129 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:45 Download gff for BS07847.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22017341..22017922 317..898 100 <- Minus
3R 22016988..22017218 899..1129 100 <- Minus
3R 22017980..22018096 200..316 100 <- Minus
3R 22018624..22018716 107..199 100 <- Minus
3R 22018780..22018827 59..106 100 <- Minus
3R 22018992..22019033 17..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:22 Download gff for BS07847.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17842710..17842940 899..1129 100 <- Minus
arm_3R 17843063..17843644 317..898 100 <- Minus
arm_3R 17843702..17843818 200..316 100 <- Minus
arm_3R 17844346..17844438 107..199 100 <- Minus
arm_3R 17844502..17844549 59..106 100 <- Minus
arm_3R 17844714..17844755 17..58 100   Minus

BS07847.pep Sequence

Translation from 16 to 1128

> BS07847.pep
MSMLARTVGRTFMQAAAARSLHTTSTLRATDNYGANRTTCTLIPGDGVGP
ELVYSLQEVFKAASVPVDFECYFLSEINPVLSAKLEDVVASIQKNKVCIK
GVLATPDYSNVGDLQTLNMKLRNDLDLYANVVHVRSLPGVKTRHTNIDTV
IIREQTEGEYSALEHESVPGIVECLKIITAKKSMRIAKFAFDYATKNQRK
KVTAVHKANIMKLGDGLFLRSCEEVSRLYPRIQFEKMIVDNTTMQMVSNP
NQFDVMVTPNLYGAIVDNLASGLVGGAGVVAGASYSSESVVFEPGARHTF
AEAVGKNVANPTAMLLCGVKLLRHINLPTYGEIIQNAINKVLNDGKVRTK
DLGGQSTTQDFTRAIILNMS*

BS07847.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6439-PB 370 CG6439-PB 1..370 1..370 1874 100 Plus
CG6439-PA 370 CG6439-PA 1..370 1..370 1874 100 Plus
CG5028-PC 392 CG5028-PC 35..387 22..370 791 43.7 Plus
CG5028-PD 393 CG5028-PD 35..387 22..370 791 43.7 Plus
CG5028-PB 402 CG5028-PB 35..387 22..370 791 43.7 Plus