Clone Sequence Records
BS07849.3prime Sequence
922 bp (799 high quality bases) assembled on 2006-01-06
> BS07849.3prime
ATGGTCTAGAAAGCTTTTAGTCGCGCGATGCGCCGATTATAGTCAGAATG
TACATGAAGATATTGATGATGTCCAGGTAGAGGTTTAGTGCCGCAAAGAT
GTACTCCTCGGGACTGATAGAGTATTTGTGCTCGCCGCCCATCATTAACT
GTGTGTCGTAGATGAGATAAACGGAGAAGAGCAGCGCTCCAATCGAGGCG
TACACCAGTGTTATGATCTTTCCCTTTACAAAGATGGCCACGATGCCGAA
GATCAGGAACACCACCATGCAGGCGATCAAAATACCGCCCATCATAGTAA
AGTCGTACTTTGTCTGCAAGGCGAAGATCGTTAGGGCCAAGCAAACCGCT
GCTGTTATGCCCACCGCCATGAGAACCTCTTTCGGAGCATATTTGGTTGC
GGAAACTCCCATTAAGAACGACTGAGCTGCTGTAAACAGACCCAAGAATA
TGAAGTTCGTCGGTGTTTGGCGGCGCACACTTTCGCAGCAAGCCATAGAC
AGCATGGTTACTAACATTACGCCGAGGGCAACCCAAAAGAGCCACATGTT
ATTCCTGGCAAAGGTTTTAGTGCCCTCGTGGTATACAAACAGGGCAACAG
CTCCAAAAGTGACGATTAGTTGTCCCATTAGAATCAGGTACACCTTACGT
ATGAATCCGCGACGGATGCTTTGGTCGTCAAACGAGAAGTTCTTGGGCTG
GCTCTCCGGATCATCGTAGGCTCCGTAGCCGCCAGCAGATGGTGGTGGTT
GGATAAATCCCGGCTGGGGAGCATAACCTCCCGGTGGAGGCCCCTGTCCG
TAGGGCTGTGGATAGGGTTGAGCACCTCCTTGTGCATAGGGTGGGTAGCC
TTGCGGCGGTCCTTGAGGTGGATAGCCGCCCTGAGGTGGATATCCACCAT
ATCCTCCCTGCGGGGGGATTAC
BS07849.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3798-PB | 942 | Nmda1-RB | 43..942 | 916..17 | 4500 | 100 | Minus |
| CG3798-PD | 975 | Nmda1-RD | 76..975 | 916..17 | 4500 | 100 | Minus |
| CG3798-PA | 942 | Nmda1-RA | 43..942 | 916..17 | 4500 | 100 | Minus |
| CG3798-PC | 975 | Nmda1-RC | 76..975 | 916..17 | 4500 | 100 | Minus |
| CG3798-PF | 951 | Nmda1-RF | 52..951 | 916..17 | 4500 | 100 | Minus |
| CG3798-PE | 975 | Nmda1-RE | 76..975 | 916..17 | 4500 | 100 | Minus |
| CG3814-PB | 735 | CG3814-RB | 628..710 | 124..42 | 165 | 87.9 | Minus |
| CG3814-PA | 720 | CG3814-RA | 649..695 | 88..42 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 00:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmda1-RI | 1592 | CG3798-RI | 127..1031 | 922..17 | 4505 | 99.9 | Minus |
| Nmda1-RH | 1634 | CG3798-RH | 169..1073 | 922..17 | 4505 | 99.9 | Minus |
| Nmda1-RG | 1727 | CG3798-RG | 262..1166 | 922..17 | 4505 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 00:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12877655..12878016 | 17..378 | 1810 | 100 | Plus |
| 2R | 25286936 | 2R | 12878384..12878675 | 625..916 | 1460 | 100 | Plus |
| 2R | 25286936 | 2R | 12878071..12878322 | 375..626 | 1260 | 100 | Plus |
| 2R | 25286936 | 2R | 12875289..12875635 | 33..379 | 415 | 74.6 | Plus |
| 3R | 32079331 | 3R | 14152992..14153129 | 47..184 | 240 | 78.3 | Plus |
Blast to na_te.dros performed on 2015-02-09 00:53:08 has no hits.
BS07849.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:37 Download gff for
BS07849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-PA | 38..942 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:19 Download gff for
BS07849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3798-PD | 71..975 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:49:23 Download gff for
BS07849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RG | 262..1169 | 11..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:04:49 Download gff for
BS07849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RG | 262..1169 | 11..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:04:49 Download gff for
BS07849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12877652..12878014 | 11..376 | 99 | <- | Plus |
| 2R | 12878073..12878321 | 377..625 | 100 | <- | Plus |
| 2R | 12878385..12878680 | 626..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:49:23 Download gff for
BS07849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8765157..8765519 | 11..376 | 99 | <- | Plus |
| arm_2R | 8765578..8765826 | 377..625 | 100 | <- | Plus |
| arm_2R | 8765890..8766185 | 626..922 | 99 | | Plus |
BS07849.5prime Sequence
965 bp (840 high quality bases) assembled on 2006-01-06
> BS07849.5prime
GAAGTTATCAGTCGACATGTCTTATTTCGCAGATCCCAACCAGCAGTACA
ACTATGGCGGCGGTAATCCCCCGCAGGGAGGATATGGTGGATATCCACCT
CAGGGCGGCTATCCACCTCAAGGACCGCCGCAAGGCTACCCACCCTATGC
ACAAGGAGGTGCTCAACCCTATCCACAGCCCTACGGACAGGGGCCTCCAC
CGGGAGGTTATGCTCCCCAGCCGGGATTTATCCAACCACCACCATCTGCT
GGCGGCTACGGAGCCTACGATGATCCGGAGAGCCAGCCCAAGAACTTCTC
GTTTGACGACCAAAGCATCCGTCGCGGATTCATACGTAAGGTGTACCTGA
TTCTAATGGGACAACTAATCGTCACTTTTGGAGCTGTTGCCCTGTTTGTA
TACCACGAGGGCACTAAAACCTTTGCCAGGAATAACATGTGGCTCTTTTG
GGTTGCCCTCGGCGTAATGTTAGTAACCATGCTGTCTATGGCTTGCTGCG
AAAGTGTGCGCCGCCAAACACCGACGAACTTCATATTCTTGGGTCTGTTT
ACAGCAGCTCAGTCGTTCTTAATGGGAGTTTCCGCAACCAAATATGCTCC
GAAAGAGGTTCTCATGGCGGTGGGCATAACAGCAGCGGTTTGCTTGGCCC
TAACGATCTTCGCCTTGCAGACAAAGTACGACTTTACTATGATGGGCGGT
ATTTTGATCGCCTGCATGGTGGTGTTCCTGATCTTCGGCATCGTGGCCAT
CTTTGTAAAGGGAAAGATCATAACACTGGTGTACGCCTCGATTGGAGCGC
TGCTCTTCTCCGTTTATCTCATCTACGACACACAGTTAATGATGGGGCGG
GGAGCACAAATACTCTATCAGTCCCGAGGAGTACATCTTTGCGGCACTTA
AACTCTACCTGGACATCATCAATATCTTCATGTACATTCTGACTATAATC
GGCGCATCGCGCGAC
BS07849.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3798-PF | 951 | Nmda1-RF | 1..830 | 17..846 | 4150 | 100 | Plus |
| CG3798-PB | 942 | Nmda1-RB | 6..821 | 31..846 | 4080 | 100 | Plus |
| CG3798-PD | 975 | Nmda1-RD | 39..854 | 31..846 | 4080 | 100 | Plus |
| CG3798-PA | 942 | Nmda1-RA | 6..821 | 31..846 | 4080 | 100 | Plus |
| CG3798-PC | 975 | Nmda1-RC | 39..854 | 31..846 | 4080 | 100 | Plus |
| CG3798-PE | 975 | Nmda1-RE | 39..854 | 31..846 | 4080 | 100 | Plus |
| CG3798-PF | 951 | Nmda1-RF | 828..948 | 845..965 | 530 | 97.5 | Plus |
| CG3798-PB | 942 | Nmda1-RB | 819..939 | 845..965 | 530 | 97.5 | Plus |
| CG3798-PD | 975 | Nmda1-RD | 852..972 | 845..965 | 530 | 97.5 | Plus |
| CG3798-PA | 942 | Nmda1-RA | 819..939 | 845..965 | 530 | 97.5 | Plus |
| CG3798-PC | 975 | Nmda1-RC | 852..972 | 845..965 | 530 | 97.5 | Plus |
| CG3798-PE | 975 | Nmda1-RE | 852..972 | 845..965 | 530 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmda1-RI | 1592 | CG3798-RI | 77..1028 | 13..965 | 4680 | 99.5 | Plus |
| Nmda1-RF | 2118 | CG3798-RF | 603..1554 | 13..965 | 4680 | 99.5 | Plus |
| Nmda1-RH | 1634 | CG3798-RH | 137..1070 | 31..965 | 4605 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12878384..12878730 | 359..13 | 1720 | 99.7 | Minus |
| 2R | 25286936 | 2R | 12877658..12878016 | 965..606 | 1705 | 98.9 | Minus |
| 2R | 25286936 | 2R | 12878071..12878322 | 609..358 | 1260 | 100 | Minus |
| 2R | 25286936 | 2R | 12875289..12875635 | 952..605 | 340 | 73.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:32:13 has no hits.
BS07849.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:38 Download gff for
BS07849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-PF | 1..948 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:20 Download gff for
BS07849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3798-PF | 1..948 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:00:16 Download gff for
BS07849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RF | 603..1554 | 13..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:19 Download gff for
BS07849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RF | 603..1554 | 13..965 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:19 Download gff for
BS07849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12877658..12878014 | 608..965 | 98 | <- | Minus |
| 2R | 12878073..12878321 | 359..607 | 100 | <- | Minus |
| 2R | 12878385..12878730 | 13..358 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:00:16 Download gff for
BS07849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8765163..8765519 | 608..965 | 98 | <- | Minus |
| arm_2R | 8765578..8765826 | 359..607 | 100 | <- | Minus |
| arm_2R | 8765890..8766235 | 13..358 | 99 | | Minus |
BS07849.complete Sequence
983 bp (983 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636008
> BS07849.complete
GAAGTTATCAGTCGACATGTCTTATTTCGCAGATCCCAACCAGCAGTACA
ACTATGGCGGCGGTAATCCCCCGCAGGGAGGATATGGTGGATATCCACCT
CAGGGCGGCTATCCACCTCAAGGACCGCCGCAAGGCTACCCACCCTATGC
ACAAGGAGGTGCTCAACCCTATCCACAGCCCTACGGACAGGGGCCTCCAC
CGGGAGGTTATGCTCCCCAGCCGGGATTTATCCAACCACCACCATCTGCT
GGCGGCTACGGAGCCTACGATGATCCGGAGAGCCAGCCCAAGAACTTCTC
GTTTGACGACCAAAGCATCCGTCGCGGATTCATACGTAAGGTGTACCTGA
TTCTAATGGGACAACTAATCGTCACTTTTGGAGCTGTTGCCCTGTTTGTA
TACCACGAGGGCACTAAAACCTTTGCCAGGAATAACATGTGGCTCTTTTG
GGTTGCCCTCGGCGTAATGTTAGTAACCATGCTGTCTATGGCTTGCTGCG
AAAGTGTGCGCCGCCAAACACCGACGAACTTCATATTCTTGGGTCTGTTT
ACAGCAGCTCAGTCGTTCTTAATGGGAGTTTCCGCAACCAAATATGCTCC
GAAAGAGGTTCTCATGGCGGTGGGCATAACAGCAGCGGTTTGCTTGGCCC
TAACGATCTTCGCCTTGCAGACAAAGTACGACTTTACTATGATGGGCGGT
ATTTTGATCGCCTGCATGGTGGTGTTCCTGATCTTCGGCATCGTGGCCAT
CTTTGTAAAGGGAAAGATCATAACACTGGTGTACGCCTCGATTGGAGCGC
TGCTCTTCTCCGTTTATCTCATCTACGACACACAGTTAATGATGGGCGGC
GAGCACAAATACTCTATCAGTCCCGAGGAGTACATCTTTGCGGCACTAAA
CCTCTACCTGGACATCATCAATATCTTCATGTACATTCTGACTATAATCG
GCGCATCGCGCGACTAAAAGCTTTCTAGACCAT
BS07849.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmda1-RI | 951 | CG3798-PI | 1..951 | 17..967 | 4755 | 100 | Plus |
| Nmda1-RF | 951 | CG3798-PF | 1..951 | 17..967 | 4755 | 100 | Plus |
| Nmda1-RH | 942 | CG3798-PH | 6..942 | 31..967 | 4685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmda1-RI | 1592 | CG3798-RI | 77..1031 | 13..967 | 4760 | 99.9 | Plus |
| Nmda1-RF | 2118 | CG3798-RF | 603..1557 | 13..967 | 4760 | 99.9 | Plus |
| Nmda1-RH | 1634 | CG3798-RH | 137..1073 | 31..967 | 4685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12877655..12878016 | 967..606 | 1810 | 100 | Minus |
| 2R | 25286936 | 2R | 12878384..12878730 | 359..13 | 1720 | 99.7 | Minus |
| 2R | 25286936 | 2R | 12878071..12878322 | 609..358 | 1260 | 100 | Minus |
| 2R | 25286936 | 2R | 12875289..12875635 | 951..605 | 415 | 74.6 | Minus |
| 3R | 32079331 | 3R | 14152992..14153129 | 937..800 | 240 | 78.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:58:31 has no hits.
BS07849.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:39 Download gff for
BS07849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RF | 1..951 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:35 Download gff for
BS07849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RF | 628..1585 | 13..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:35 Download gff for
BS07849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RF | 607..1555 | 17..965 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:39 Download gff for
BS07849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RF | 628..1585 | 13..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:11 Download gff for
BS07849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RF | 607..1555 | 17..965 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:11 Download gff for
BS07849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12878385..12878726 | 17..358 | 100 | | Minus |
| 2R | 12877657..12878014 | 608..965 | 100 | <- | Minus |
| 2R | 12878073..12878321 | 359..607 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:35 Download gff for
BS07849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8765162..8765519 | 608..965 | 100 | <- | Minus |
| arm_2R | 8765578..8765826 | 359..607 | 100 | <- | Minus |
| arm_2R | 8765890..8766231 | 17..358 | 100 | | Minus |
BS07849.pep Sequence
Translation from 16 to 966
> BS07849.pep
MSYFADPNQQYNYGGGNPPQGGYGGYPPQGGYPPQGPPQGYPPYAQGGAQ
PYPQPYGQGPPPGGYAPQPGFIQPPPSAGGYGAYDDPESQPKNFSFDDQS
IRRGFIRKVYLILMGQLIVTFGAVALFVYHEGTKTFARNNMWLFWVALGV
MLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATKYAPKEVLM
AVGITAAVCLALTIFALQTKYDFTMMGGILIACMVVFLIFGIVAIFVKGK
IITLVYASIGALLFSVYLIYDTQLMMGGEHKYSISPEEYIFAALNLYLDI
INIFMYILTIIGASRD*
BS07849.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmda1-PI | 316 | CG3798-PI | 1..316 | 1..316 | 1682 | 100 | Plus |
| Nmda1-PF | 316 | CG3798-PF | 1..316 | 1..316 | 1682 | 100 | Plus |
| Nmda1-PE | 324 | CG3798-PE | 12..324 | 4..316 | 1658 | 99.4 | Plus |
| Nmda1-PC | 324 | CG3798-PC | 12..324 | 4..316 | 1658 | 99.4 | Plus |
| Nmda1-PD | 324 | CG3798-PD | 12..324 | 4..316 | 1658 | 99.4 | Plus |
