Clone BS07850 Report

Search the DGRC for BS07850

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG10483-RA
Protein status:BS07850.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07850.3prime Sequence

945 bp (814 high quality bases) assembled on 2006-01-06

> BS07850.3prime
ATGGTCTAGAAAGCTTCTACGAGCAAAGATCCTCAATGGATTCCCCTTGA
AGGAGCAGTCGCTGCTCCTGTTTGTTCTTCTTCGTTGCGGATTTGCCGCC
AGCGGCTTTTCCACGCCTTCGATTCAACACGCCATCAGTTTCATCCATCA
TGCGCAAAATCGTGGTCTGATCCGAGCAATCCATTGGAGCGACCGATATA
TCCCTGACAGCCCTGAATTTGCCCACGTTGTTTAGATGCTCGTTCTCCAA
CCGAAAGTAATTCCAAATGAAGCGACGGAAAACCTCCAGGGGACTGAGAA
TGGTCATCATCACATCGCCCTCAATGTAGCCAGCCTCAATTAGACTCATG
GACAGGGTCCAGCTGAAGCGCAGTATTAAATCCTCAATTATGCCAAAGTA
GTAGAACCACGTCGATGAATAAACGATTTCCTCACGCAAGAATCGATTGT
CGCCCGCCTTCGAGTCGAACAGTCCCCAGTCCATTTTGATGTCCCATGTG
TAGGCGTAGCAGGACGAGAAGATGGCGGCCGTAATCCAGCAGTAGAACCA
AGGATTCTCCTTGGACAGCGGGTAGGTGTCGGTGGTCGTGTGATATTTGT
GGGCAAATATAACCACAAAGAAGGACGTTGCATACTTGGCGGCGTTGACC
AGATGCGGAAATGACTCCTTTGTGTCGCGGTATCTGCGGATGCACTGGGC
GAACCGGAAGTAGGCAGGCATTATGGCAACAATGGGATGCAACAGAGACA
CGTACTCCACACAGTGGCTGGCAGCCTTGCCAGCCTTGTGCCATGTGGGA
CTTCGACCAAAGAAGCAAATCAGAAAGGGTATATCCAGAAAAGCTGGCAC
CATGCTGTTCAGCTGGTCGGCCAGCCAGAAATCGGCAAAGTTTACAAAGC
AGAACGGAGCCATGATTACCCGAATGAAGATCCTTATGGCCCCAA

BS07850.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10483-PA 2016 CG10483-RA 1091..2016 942..17 4580 99.7 Minus
CG7536-PB 2025 CG7536-RB 1513..1560 511..464 140 91.6 Minus
CG7536-PA 2025 CG7536-RA 1513..1560 511..464 140 91.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10483-RA 2238 CG10483-RA 1202..2127 942..17 4600 99.8 Minus
CG7536-RD 3537 CG7536-RD 2234..2365 511..380 270 80.3 Minus
CG7536-RC 3494 CG7536-RC 1819..1950 511..380 270 80.3 Minus
CG7536-RD 3537 CG7536-RD 2456..2518 289..227 180 85.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5918360..5918603 167..410 1220 100 Plus
3L 28110227 3L 5919125..5919320 580..775 980 100 Plus
3L 28110227 3L 5918755..5918925 410..580 855 100 Plus
3L 28110227 3L 5919563..5919730 775..942 810 98.8 Plus
3L 28110227 3L 5918016..5918169 17..170 770 100 Plus
X 23542271 X 18080188..18080289 410..511 225 81.4 Plus
Blast to na_te.dros performed on 2015-01-31 16:26:01 has no hits.

BS07850.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:39 Download gff for BS07850.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10483-PA 1090..2016 17..943 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:21 Download gff for BS07850.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10483-PA 1090..2016 17..943 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:23:49 Download gff for BS07850.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 1201..2134 10..943 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:42:17 Download gff for BS07850.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 1201..2134 10..943 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:42:17 Download gff for BS07850.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5918009..5918165 10..166 97 <- Plus
3L 5918360..5918602 167..409 100 <- Plus
3L 5918755..5918924 410..579 100 <- Plus
3L 5919125..5919319 580..774 100 <- Plus
3L 5919563..5919730 775..943 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:23:49 Download gff for BS07850.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5912225..5912419 580..774 100 <- Plus
arm_3L 5911109..5911265 10..166 97 <- Plus
arm_3L 5911460..5911702 167..409 100 <- Plus
arm_3L 5911855..5912024 410..579 100 <- Plus
arm_3L 5912663..5912830 775..943 98   Plus

BS07850.5prime Sequence

909 bp (863 high quality bases) assembled on 2006-01-06

> BS07850.5prime
GAAGTTATCAGTCGACATGAAGTTCGCCGAGCACCTGACGGCCCACATAA
CGCCCGAGTGGCGAAAGCAGTACATTAACTATGAGGAAATGAAAGCCATG
CTGTATGCAGCCATCGAACAATCGCCCTCCGCAGAACTCGTGGAGCGCGA
GATGGTGACGCGATACTTTGCCAAATTCGATGAGGAGTTCTTTCACTACT
GCGACAAGGAGCTGGCCAAGATCAACACATTCTACTCGGAGAAGATGGCC
GAGGCGACACGCAAATATGGCAGTCTGCGCAGCGAGTTGACCGAAGCCCT
GGAAATGGGACACCCAAAGAAACTGCCCGCGTGGAAGAGGCGAACGCCGC
TGGGCAAGAAGAATGTGCCGGCGCGCAAGATACAGGATCTCAAGTTGGCA
TTTAGTGAATTTTATCTGGGACTGATACTGCTCCAGAACTATCAGAACCT
CAACTTCACGGGTTTCCGTAAGATACTTAAGAAGCACGACAAGTTGCTGA
GCGTCGACTATGGTGCACGTTGGCGCACGGATCACGTGGAGGCAGCCCAC
TTTTACACCAACAAGGACATTGATCGGCTGATCCAGGAGACGGAGCAGGC
TGTTACCCAGGACATCGAGGGAGGAGATCGTCAGAGGGCAATGAAGCGGT
TGAGGGTACCACCACTGGGCGAACAGCAGAGTCCTTGGACGACCTTCAAG
GTTGGTCTCTTTTCTGGCGCCTTTGTGGTGCTCTTCATTACGGTTGTGAT
CGCTGCCATGTTCTACGGATTCGGCGAGAACTGGCGGGCCGGAATGAGGA
TGTTCCGCGCACCATTCCTCATCATCGAATGCCTCTTCCTTTGGGGCGTC
AATGTCTACGGCTGGAGGTCGTCCGGTGTGAACCACGTCCTCATCTTTGA
GTTGGATCC

BS07850.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10483-PA 2016 CG10483-RA 1..893 17..909 4465 100 Plus
CG7536-PB 2025 CG7536-RB 1..90 17..106 275 92.2 Plus
CG7536-PA 2025 CG7536-RA 1..90 17..106 275 92.2 Plus
CG7536-PB 2025 CG7536-RB 631..686 656..711 155 91 Plus
CG7536-PA 2025 CG7536-RA 631..686 656..711 155 91 Plus
CG7536-PB 2025 CG7536-RB 154..197 170..213 145 93.1 Plus
CG7536-PA 2025 CG7536-RA 154..197 170..213 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10483-RA 2238 CG10483-RA 108..1004 13..909 4470 99.9 Plus
CG7536-RD 3537 CG7536-RD 721..960 16..255 540 81.7 Plus
CG7536-RC 3494 CG7536-RC 306..545 16..255 540 81.7 Plus
CG7536-RD 3537 CG7536-RD 1088..1480 392..781 400 74.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5919928..5920753 909..84 4130 100 Minus
3L 28110227 3L 5921136..5921209 86..13 355 98.6 Minus
X 23542271 X 18081118..18081349 767..536 290 75 Minus
X 23542271 X 18081972..18082143 255..84 290 77.9 Minus
X 23542271 X 18082218..18082288 86..16 265 91.5 Minus
X 23542271 X 18081747..18081844 489..392 190 79.6 Minus
Blast to na_te.dros performed on 2015-02-11 09:23:46 has no hits.

BS07850.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:40 Download gff for BS07850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10483-PA 1..893 17..909 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:22 Download gff for BS07850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10483-PA 1..893 17..909 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:08:40 Download gff for BS07850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 105..1004 8..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:41:08 Download gff for BS07850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 105..1004 8..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:41:08 Download gff for BS07850.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5919928..5920751 86..909 100 <- Minus
3L 5921137..5921212 8..85 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:08:40 Download gff for BS07850.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5913028..5913851 86..909 100 <- Minus
arm_3L 5914237..5914312 8..85 94   Minus

BS07850.complete Sequence

2048 bp assembled on 2008-01-03

> BS07850.complete
GAAGTTATCAGTCGACATGAAGTTCGCCGAGCACCTGACGGCCCACATAA
CGCCCGAGTGGCGAAAGCAGTACATTAACTATGAGGAAATGAAAGCCATG
CTGTATGCAGCCATCGAACAATCGCCCTCCGCAGAACTCGTGGAGCGCGA
GATGGTGACGCGATACTTTGCCAAATTCGATGAGGAGTTCTTTCACTACT
GCGACAAGGAGCTGGCCAAGATCAACACATTCTACTCGGAGAAGATGGCC
GAGGCGACACGCAAATATGGCAGTCTGCGCAGCGAGTTGACCGAAGCCCT
GGAAATGGGACACCCAAAGAAACTGCCCGCGTGGAAGAGGCGAACGCCGC
TGGGCAAGAAGAATGTGCCGGCGCGCAAGATACAGGATCTCAAGTTGGCA
TTTAGTGAATTTTATCTGGGACTGATACTGCTCCAGAACTATCAGAACCT
CAACTTCACGGGTTTCCGTAAGATACTTAAGAAGCACGACAAGTTGCTGA
GCGTCGACTATGGTGCACGTTGGCGCACGGATCACGTGGAGGCAGCCCAC
TTTTACACCAACAAGGACATTGATCGGCTGATCCAGGAGACGGAGCAGGC
TGTTACCCAGGACATCGAGGGAGGAGATCGTCAGAGGGCAATGAAGCGGT
TGAGGGTACCACCACTGGGCGAACAGCAGAGTCCTTGGACGACCTTCAAG
GTTGGTCTCTTTTCTGGCGCCTTTGTGGTGCTCTTCATTACGGTTGTGAT
CGCTGCCATGTTCTACGGATTCGGCGAGAACTGGCGGGCCGGAATGAGGA
TGTTCCGCGCACCATTCCTCATCATCGAATGCCTCTTCCTTTGGGGCGTC
AATGTCTACGGCTGGAGGTCGTCCGGTGTGAACCACGTCCTCATCTTTGA
GTTGGATCCACGAAATCACCTGTCCGAGCAAAACATCATGGAAGTGGCAT
CCGTGTTTGGAGTTATCTGGGCCTGCTGCGTCCTGAGCTACATCTTTTGC
GATCCCCTCGGCATCCCACAGTACGCAGCTCCGCTTTGCCTCTACACATT
GATGGCTGCCTTTTTGCTGAATCCCACGAAGACGTTCCATCATGAGGCCC
GGTTTTGGGCCATAAGGATCCTCATCCGGGTAATCATGGCTCCGTTCTGC
TTTGTAAACTTTGCCGATTTCTGGCTGGCCGACCAGCTGAACAGCATGGT
GCCAGCTTTTCTGGATATACCCTTTCTGATTTGCTTCTTTGGTCGAAGTC
CCACATGGCACAAGGCTGGCAAGGCTGCCAGCCACTGTGTGGAGTACGTG
TCTCTGTTGCATCCCATTGTTGCCATAATGCCTGCCTACTTCCGGTTCGC
CCAGTGCATCCGCAGATACCGCGACACAAAGGAGTCATTTCCGCATCTGG
TCAACGCCGCCAAGTATGCAACGTCCTTCTTTGTGGTTATATTTGCCCAC
AAATATCACACGACCACCGACACCTACCCGCTGTCCAAGGAGAATCCTTG
GTTCTACTGCTGGATTACGGCCGCCATCTTCTCGTCCTGCTACGCCTACA
CATGGGACATCAAAATGGACTGGGGACTGTTCGACTCGAAGGCGGGCGAC
AATCGATTCTTGCGTGAGGAAATCGTTTATTCATCGACGTGGTTCTACTA
CTTTGGCATAATTGAGGATTTAATACTGCGCTTCAGCTGGACCCTGTCCA
TGAGTCTAATTGAGGCTGGCTACATTGAGGGCGATGTGATGATGACCATT
CTCAGTCCCCTGGAGGTTTTCCGTCGCTTCATTTGGAATTACTTTCGGTT
GGAGAACGAGCATCTAAACAACGTGGGCAAATTCAGGGCTGTCAGGGATA
TATCGGTCGCTCCAATGGATTGCTCGGATCAGACCACGATTTTGCGCATG
ATGGATGAAACTGATGGCGTGTTGAATCGAAGGCGTGGAAAAGCCGCTGG
CGGCAAATCCGCAACGAAGAAGAACAAACAGGAGCAGCGACTGCTCCTTC
AAGGGGAATCCATTGAGGATCTTTGCTCGTAGAAGCTTTCTAGACCAT

BS07850.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10483-RA 2016 CG10483-PA 1..2016 17..2032 10080 100 Plus
CG7536-RD 2025 CG7536-PD 1..239 17..255 535 81.6 Plus
CG7536-RC 2025 CG7536-PC 1..239 17..255 535 81.6 Plus
CG7536-RD 2025 CG7536-PD 367..926 392..948 420 72.5 Plus
CG7536-RD 2025 CG7536-PD 1513..1644 1538..1669 270 80.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10483-RA 2238 CG10483-RA 108..2127 13..2032 10085 100 Plus
CG7536-RD 3537 CG7536-RD 721..960 16..255 540 81.7 Plus
CG7536-RC 3494 CG7536-RC 306..545 16..255 540 81.7 Plus
CG7536-RD 3537 CG7536-RD 1088..1647 392..948 420 72.5 Plus
CG7536-RD 3537 CG7536-RD 2234..2365 1538..1669 270 80.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5919563..5920753 1274..84 5955 100 Minus
3L 28110227 3L 5918360..5918603 1882..1639 1220 100 Minus
3L 28110227 3L 5919125..5919320 1469..1274 980 100 Minus
3L 28110227 3L 5918755..5918925 1639..1469 855 100 Minus
3L 28110227 3L 5918016..5918169 2032..1879 770 100 Minus
3L 28110227 3L 5921136..5921209 86..13 355 98.6 Minus
X 23542271 X 18080934..18081349 948..536 330 73.1 Minus
X 23542271 X 18081972..18082143 255..84 290 77.9 Minus
X 23542271 X 18082218..18082288 86..16 265 91.5 Minus
X 23542271 X 18080188..18080289 1639..1538 225 81.4 Minus
X 23542271 X 18081747..18081844 489..392 190 79.6 Minus
Blast to na_te.dros performed on 2014-11-27 13:36:45 has no hits.

BS07850.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:23 Download gff for BS07850.complete
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 1..2016 17..2032 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:56 Download gff for BS07850.complete
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 94..2109 17..2032 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:18 Download gff for BS07850.complete
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 112..2127 17..2032 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:23 Download gff for BS07850.complete
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 87..2116 8..2039 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:28 Download gff for BS07850.complete
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 112..2127 17..2032 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:28 Download gff for BS07850.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5918016..5918165 1883..2032 100 <- Minus
3L 5918360..5918602 1640..1882 100 <- Minus
3L 5918755..5918924 1470..1639 100 <- Minus
3L 5919125..5919319 1275..1469 100 <- Minus
3L 5919563..5920751 86..1274 100 <- Minus
3L 5921137..5921205 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:18 Download gff for BS07850.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5911116..5911265 1883..2032 100 <- Minus
arm_3L 5911460..5911702 1640..1882 100 <- Minus
arm_3L 5911855..5912024 1470..1639 100 <- Minus
arm_3L 5912225..5912419 1275..1469 100 <- Minus
arm_3L 5912663..5913851 86..1274 100 <- Minus
arm_3L 5914237..5914305 17..85 100   Minus

BS07850.pep Sequence

Translation from 16 to 2031

> BS07850.pep
MKFAEHLTAHITPEWRKQYINYEEMKAMLYAAIEQSPSAELVEREMVTRY
FAKFDEEFFHYCDKELAKINTFYSEKMAEATRKYGSLRSELTEALEMGHP
KKLPAWKRRTPLGKKNVPARKIQDLKLAFSEFYLGLILLQNYQNLNFTGF
RKILKKHDKLLSVDYGARWRTDHVEAAHFYTNKDIDRLIQETEQAVTQDI
EGGDRQRAMKRLRVPPLGEQQSPWTTFKVGLFSGAFVVLFITVVIAAMFY
GFGENWRAGMRMFRAPFLIIECLFLWGVNVYGWRSSGVNHVLIFELDPRN
HLSEQNIMEVASVFGVIWACCVLSYIFCDPLGIPQYAAPLCLYTLMAAFL
LNPTKTFHHEARFWAIRILIRVIMAPFCFVNFADFWLADQLNSMVPAFLD
IPFLICFFGRSPTWHKAGKAASHCVEYVSLLHPIVAIMPAYFRFAQCIRR
YRDTKESFPHLVNAAKYATSFFVVIFAHKYHTTTDTYPLSKENPWFYCWI
TAAIFSSCYAYTWDIKMDWGLFDSKAGDNRFLREEIVYSSTWFYYFGIIE
DLILRFSWTLSMSLIEAGYIEGDVMMTILSPLEVFRRFIWNYFRLENEHL
NNVGKFRAVRDISVAPMDCSDQTTILRMMDETDGVLNRRRGKAAGGKSAT
KKNKQEQRLLLQGESIEDLCS*

BS07850.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10483-PA 671 CG10483-PA 1..671 1..671 3589 100 Plus
CG7536-PD 674 CG7536-PD 1..665 1..669 2183 62.4 Plus
CG7536-PC 674 CG7536-PC 1..665 1..669 2183 62.4 Plus
CG7536-PA 674 CG7536-PA 1..665 1..669 2183 62.4 Plus
CG7536-PB 674 CG7536-PB 1..665 1..669 2183 62.4 Plus