Clone Sequence Records
BS07853.3prime Sequence
924 bp (893 high quality bases) assembled on 2006-01-06
> BS07853.3prime
ATGGTCTAGAAAGCTTCTATGTGTTTTGCTGCCAGTGGTGCTGCTGTCGC
AACTTTTCGGCCTTCCAACTGGATTCGCCCACACTTGGCGGATAGGGTAT
AATATCCGGCTGCTGTTCCGAGGACATGTTGTCCACATCGTTGTGGTCGA
GGTTGTTGCCGCTGTCGACCACATCCTCTTCGTTGTCCTTGTTGTTGCCA
GCATTGTTGTTGGTCGGCTCATTTGGTTCGCCATTAGTTTCGTGGTTCCG
GCCTCGGTTATTGTTTTTGTAATTGTAATAACCATATTTATTCGTGTTAG
CCATATTGTCGTTGCTGTTGCTGTTGCTACTAATGTTGCTGCTGCCCGCG
TTGCAATTCTTCGTGCTGCATTCACATTTCAGTATCCATTCGACGGCAAT
GAATTTATTCTCGATTTGTATCTGATGTGATTGCAGGAATTCCTGATCGA
TTGGCTCCAAGGCGACCGTGTCCCATAACTGTGCACTTTGCAGCACCGGC
TCAGGCTCCACATTATCATCCCCATCATCATCATCATCATCATCTTCATC
ATCCTGGGGCTCCTTCATCTGCCTTTTTTTGTTCGCTTGACGTCGCTGTA
CGTAGTTAATTGGATCGACAGCATTTAAAGGACACAGCAACTCAACCTGT
ATCGTAGTGGATACCGCCGGGGCACAGCATTTGACCCCGCGATGGCAACG
GCCACAGAGCTTCGGTCGATACAGCTTTCGGGAAACGCACTCGCCCAGTC
GTATCCTGGCAGGACCTAGGCGCTGGATGCTCCGACACTCGTGGCCCTTT
CGTATCCTGTGGGCCGGCTCCTCGTGCTCCTTGTGGTGATGATAACGCTG
ATGGGAGTGGCTGTGGGCGCGATGCTGCTTCCGCTTGTGCGTCACGGGCG
GCTCCTGCTCCACTTATTGTCCTC
BS07853.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32183-PB | 1413 | Ccn-RB | 536..1413 | 894..17 | 4390 | 100 | Minus |
| CG32183-PA | 1125 | Ccn-RA | 782..1125 | 360..17 | 1720 | 100 | Minus |
| CG32183-PA | 1125 | Ccn-RA | 536..783 | 894..647 | 1240 | 100 | Minus |
| CG32183-PB | 1413 | Ccn-RB | 505..535 | 924..894 | 155 | 100 | Minus |
| CG32183-PA | 1125 | Ccn-RA | 505..535 | 924..894 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccn-RB | 2778 | CG32183-RB | 1055..1963 | 924..17 | 4520 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17747681..17748024 | 360..17 | 1720 | 100 | Minus |
| 3L | 28110227 | 3L | 17738636..17738926 | 649..359 | 1455 | 100 | Minus |
| 3L | 28110227 | 3L | 17730189..17730343 | 799..645 | 775 | 100 | Minus |
| 3L | 28110227 | 3L | 17729748..17729873 | 924..800 | 580 | 99.2 | Minus |
Blast to na_te.dros performed 2015-02-02 20:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..3004 | 345..105 | 193 | 57.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2540 | 387..141 | 181 | 57.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6923 | 369..182 | 174 | 56.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2526 | 345..140 | 172 | 57.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..7083 | 368..105 | 168 | 55.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2401 | 368..304 | 162 | 73.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2625 | 368..140 | 159 | 55.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6705..6904 | 388..177 | 158 | 56.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2637 | 346..13 | 156 | 52.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1094..1200 | 371..262 | 155 | 62.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1131 | 369..307 | 153 | 71.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6828 | 368..316 | 148 | 75.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6927 | 343..147 | 147 | 57.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2530 | 369..190 | 145 | 55.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2780..2998 | 372..142 | 145 | 56.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6888 | 353..307 | 136 | 76.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6835..6897 | 369..307 | 135 | 68.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6822 | 369..304 | 132 | 66.7 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3284..3323 | 345..306 | 128 | 80 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2459..2521 | 369..307 | 126 | 66.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6846 | 368..307 | 123 | 69.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1514..1579 | 372..304 | 122 | 66.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2846..3004 | 345..174 | 117 | 60 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1149 | 369..304 | 115 | 68.2 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3269..3319 | 354..304 | 111 | 68.6 | Minus |
BS07853.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:45 Download gff for
BS07853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-PB | 505..1413 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:29 Download gff for
BS07853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32183-PB | 505..1413 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:03:20 Download gff for
BS07853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 1055..1963 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:14:21 Download gff for
BS07853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 1055..1963 | 17..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:14:21 Download gff for
BS07853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17729748..17729873 | 800..924 | 99 | -> | Minus |
| 3L | 17747683..17748024 | 17..358 | 100 | | Minus |
| 3L | 17730189..17730341 | 647..799 | 100 | -> | Minus |
| 3L | 17738639..17738926 | 359..646 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:03:20 Download gff for
BS07853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17722848..17722973 | 800..924 | 99 | -> | Minus |
| arm_3L | 17723289..17723441 | 647..799 | 100 | -> | Minus |
| arm_3L | 17731739..17732026 | 359..646 | 100 | -> | Minus |
| arm_3L | 17740783..17741124 | 17..358 | 100 | | Minus |
BS07853.5prime Sequence
917 bp (866 high quality bases) assembled on 2006-01-06
> BS07853.5prime
GAAGTTATCAGTCGACATGCTGATACTGCTGCCGCTGCTTGGAATTTTTG
GTAATGGTTTCGTTGCTGAAGTCGAGGCAAATCTAAGTCTGGGCTTTAAG
GCCATCAAATTGCCCAGGCATCCGAATCCGGCCAATTGCAGTGTGGGCAA
CACAACATTCGCACATGGAGTCACATTCAAATTGGATTGTAAAACCCAAT
GCGTTTGCGAGAATGGCCGCCACGCCTGCTCCACGCTCTGCCCCAATGAG
CAGCTCCCGGCGCCGGAGGACACGATTTCATGCCGATCGCCGCGCCTCGT
CGAAGTTCCCGGCCACTGTTGCAAGATGTGGCTATGTGAGAATCCAACAG
CTGATGTTTACGCCACCTGCCACAACAGCACCACCAGCGGCAATTGGACG
GCCTGCAGCAGGAGCTGCGGCCTTGGCACCGCCACGCGGCACACCACCAC
CCACGCGGGCTGCCATCAACTGAGCAATTTGCGGCTCTGCGAGAATCGCA
GGTGCGACAAGGACGACCACGAGGACAATAAGTGGAGCAGGAGCCGCCCG
TTGACGCACAAGCGGAAGCAGCATCGCGCCCACAGCCACTCCCATCAGCG
TTATCATCACCACAAGGAGCACGAGGAGCCGGCCCACAGGATACGAAAGG
GCCACGAGTGTCGGAGCATCCAGCGCCTAGGTCCTGCCAGGATACGACTG
GGCGAGTGCGTTTCCCGAAAGCTGTATCGACCGAAGCTCTGTGGCCGTTG
CCATCGCGGGGTCAAATGCTGTGCCCCGGCGGTATCCACTACGATACAGG
TTGAGTTGCTGTGTCCCTTTAATGCTGTCGATCCAATTAACTACGTACAG
CGACGTCAAGCGAACAAAAAAGGCAGATGAAAGAGCCCCAGGATGATGAA
GATGATGATGATGATGA
BS07853.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32183-PB | 1413 | Ccn-RB | 1..855 | 17..871 | 4225 | 99.7 | Plus |
| CG32183-PA | 1125 | Ccn-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
| CG32183-PB | 1413 | Ccn-RB | 851..902 | 866..917 | 235 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccn-RB | 2778 | CG32183-RB | 551..1452 | 17..917 | 4440 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17729583..17729873 | 356..646 | 1455 | 100 | Plus |
| 3L | 28110227 | 3L | 17730189..17730343 | 647..801 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 17723139..17723285 | 210..356 | 735 | 100 | Plus |
| 3L | 28110227 | 3L | 17738636..17738757 | 797..917 | 515 | 96.7 | Plus |
| 3L | 28110227 | 3L | 17715970..17716062 | 17..109 | 465 | 100 | Plus |
| 3L | 28110227 | 3L | 17721808..17721888 | 131..211 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:35:16 has no hits.
BS07853.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:46 Download gff for
BS07853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-PB | 1..901 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:30 Download gff for
BS07853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32183-PB | 1..901 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:09 Download gff for
BS07853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 543..1451 | 9..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:54:54 Download gff for
BS07853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 543..1451 | 9..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:54:54 Download gff for
BS07853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17715964..17716062 | 9..109 | 96 | -> | Plus |
| 3L | 17716164..17716185 | 110..131 | 100 | -> | Plus |
| 3L | 17721809..17721888 | 132..211 | 100 | -> | Plus |
| 3L | 17723141..17723285 | 212..356 | 100 | -> | Plus |
| 3L | 17729584..17729873 | 357..646 | 100 | -> | Plus |
| 3L | 17730189..17730341 | 647..799 | 100 | -> | Plus |
| 3L | 17738639..17738756 | 800..916 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:09 Download gff for
BS07853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17709064..17709162 | 9..109 | 96 | -> | Plus |
| arm_3L | 17709264..17709285 | 110..131 | 100 | -> | Plus |
| arm_3L | 17714909..17714988 | 132..211 | 100 | -> | Plus |
| arm_3L | 17716241..17716385 | 212..356 | 100 | -> | Plus |
| arm_3L | 17722684..17722973 | 357..646 | 100 | -> | Plus |
| arm_3L | 17723289..17723441 | 647..799 | 100 | -> | Plus |
| arm_3L | 17731739..17731856 | 800..916 | 96 | | Plus |
BS07853.complete Sequence
1445 bp (1445 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636010
> BS07853.complete
GAAGTTATCAGTCGACATGCTGATACTGCTGCCGCTGCTTGGAATTTTTG
GTAATGGTTTCGTTGCTGAAGTCGAGGCAAATCTAAGTCTGGGCTTTAAG
GCCATCAAATTGCCCAGGCATCCGAATCCGGCCAATTGCAGTGTGGGCAA
CACAACATTCGCACATGGAGTCACATTCAAATTGGATTGTAAAACCCAAT
GCGTTTGCGAGAATGGCCGCCACGCCTGCTCCACGCTCTGCCCCAATGAG
CAGCTCCCGGCGCCGGAGGACACGATTTCATGCCGATCGCCGCGCCTCGT
CGAAGTTCCCGGCCACTGTTGCAAGATGTGGCTATGTGAGAATCCAACAG
CTGATGTTTACGCCACCTGCCACAACAGCACCACCAGCGGCAATTGGACG
GCCTGCAGCAGGAGCTGCGGCCTTGGCACCGCCACGCGGCACACCACCAC
CCACGCGGGCTGCCATCAACTGAGCAATTTGCGGCTCTGCGAGAATCGCA
GGTGCGACAAGGACGACCACGAGGACAATAAGTGGAGCAGGAGCCGCCCG
TTGACGCACAAGCGGAAGCAGCATCGCGCCCACAGCCACTCCCATCAGCG
TTATCATCACCACAAGGAGCACGAGGAGCCGGCCCACAGGATACGAAAGG
GCCACGAGTGTCGGAGCATCCAGCGCCTAGGTCCTGCCAGGATACGACTG
GGCGAGTGCGTTTCCCGAAAGCTGTATCGACCGAAGCTCTGTGGCCGTTG
CCATCGCGGGGTCAAATGCTGTGCCCCGGCGGTATCCACTACGATACAGG
TTGAGTTGCTGTGTCCTTTAAATGCTGTCGATCCAATTAACTACGTACAG
CGACGTCAAGCGAACAAAAAAAGGCAGATGAAGGAGCCCCAGGATGATGA
AGATGATGATGATGATGATGATGGGGATGATAATGTGGAGCCTGAGCCGG
TGCTGCAAAGTGCACAGTTATGGGACACGGTCGCCTTGGAGCCAATCGAT
CAGGAATTCCTGCAATCACATCAGATACAAATCGAGAATAAATTCATTGC
CGTCGAATGGATACTGAAATGTGAATGCAGCACGAAGAATTGCAACGCGG
GCAGCAGCAACATTAGTAGCAACAGCAACAGCAACGACAATATGGCTAAC
ACGAATAAATATGGTTATTACAATTACAAAAACAATAACCGAGGCCGGAA
CCACGAAACTAATGGCGAACCAAATGAGCCGACCAACAACAATGCTGGCA
ACAACAAGGACAACGAAGAGGATGTGGTCGACAGCGGCAACAACCTCGAC
CACAACGATGTGGACAACATGTCCTCGGAACAGCAGCCGGATATTATACC
CTATCCGCCAAGTGTGGGCGAATCCAGTTGGAAGGCCGAAAAGTTGCGAC
AGCAGCACCACTGGCAGCAAAACACATAGAAGCTTTCTAGACCAT
BS07853.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccn-RB | 1413 | CG32183-PB | 1..1413 | 17..1429 | 7065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccn-RB | 2778 | CG32183-RB | 551..1963 | 17..1429 | 7065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17747681..17748024 | 1086..1429 | 1720 | 100 | Plus |
| 3L | 28110227 | 3L | 17729583..17729873 | 356..646 | 1455 | 100 | Plus |
| 3L | 28110227 | 3L | 17738636..17738926 | 797..1087 | 1455 | 100 | Plus |
| 3L | 28110227 | 3L | 17730189..17730343 | 647..801 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 17723139..17723285 | 210..356 | 735 | 100 | Plus |
| 3L | 28110227 | 3L | 17715970..17716062 | 17..109 | 465 | 100 | Plus |
| 3L | 28110227 | 3L | 17721808..17721888 | 131..211 | 405 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 05:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..3004 | 1101..1341 | 193 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2540 | 1059..1305 | 181 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6923 | 1077..1264 | 174 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2526 | 1101..1306 | 172 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..7083 | 1078..1341 | 168 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2401 | 1078..1142 | 162 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2625 | 1078..1306 | 159 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6705..6904 | 1058..1269 | 158 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2637 | 1100..1433 | 156 | 52.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1094..1200 | 1075..1184 | 155 | 62.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1131 | 1077..1139 | 153 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6828 | 1078..1130 | 148 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6927 | 1103..1299 | 147 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2530 | 1077..1256 | 145 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2780..2998 | 1074..1304 | 145 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6888 | 1093..1139 | 136 | 76.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6835..6897 | 1077..1139 | 135 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6822 | 1077..1142 | 132 | 66.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3284..3323 | 1101..1140 | 128 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2459..2521 | 1077..1139 | 126 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6846 | 1078..1139 | 123 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1514..1579 | 1074..1142 | 122 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2846..3004 | 1101..1272 | 117 | 60 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1149 | 1077..1142 | 115 | 68.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3269..3319 | 1092..1142 | 111 | 68.6 | Plus |
BS07853.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:43 Download gff for
BS07853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 1..1413 | 17..1429 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:33 Download gff for
BS07853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 551..1963 | 17..1429 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:30 Download gff for
BS07853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 551..1963 | 17..1429 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:43 Download gff for
BS07853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 543..1963 | 9..1429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:14:50 Download gff for
BS07853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 551..1963 | 17..1429 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:14:50 Download gff for
BS07853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17729584..17729873 | 357..646 | 100 | -> | Plus |
| 3L | 17730189..17730341 | 647..799 | 100 | -> | Plus |
| 3L | 17723141..17723285 | 212..356 | 100 | -> | Plus |
| 3L | 17715970..17716062 | 17..109 | 100 | -> | Plus |
| 3L | 17716164..17716185 | 110..131 | 100 | -> | Plus |
| 3L | 17721809..17721888 | 132..211 | 100 | -> | Plus |
| 3L | 17738639..17738926 | 800..1087 | 100 | -> | Plus |
| 3L | 17747683..17748024 | 1088..1429 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:30 Download gff for
BS07853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17716241..17716385 | 212..356 | 100 | -> | Plus |
| arm_3L | 17709264..17709285 | 110..131 | 100 | -> | Plus |
| arm_3L | 17714909..17714988 | 132..211 | 100 | -> | Plus |
| arm_3L | 17709070..17709162 | 17..109 | 100 | -> | Plus |
| arm_3L | 17722684..17722973 | 357..646 | 100 | -> | Plus |
| arm_3L | 17723289..17723441 | 647..799 | 100 | -> | Plus |
| arm_3L | 17731739..17732026 | 800..1087 | 100 | -> | Plus |
| arm_3L | 17740783..17741124 | 1088..1429 | 100 | | Plus |
BS07853.pep Sequence
Translation from 16 to 1428
> BS07853.pep
MLILLPLLGIFGNGFVAEVEANLSLGFKAIKLPRHPNPANCSVGNTTFAH
GVTFKLDCKTQCVCENGRHACSTLCPNEQLPAPEDTISCRSPRLVEVPGH
CCKMWLCENPTADVYATCHNSTTSGNWTACSRSCGLGTATRHTTTHAGCH
QLSNLRLCENRRCDKDDHEDNKWSRSRPLTHKRKQHRAHSHSHQRYHHHK
EHEEPAHRIRKGHECRSIQRLGPARIRLGECVSRKLYRPKLCGRCHRGVK
CCAPAVSTTIQVELLCPLNAVDPINYVQRRQANKKRQMKEPQDDEDDDDD
DDGDDNVEPEPVLQSAQLWDTVALEPIDQEFLQSHQIQIENKFIAVEWIL
KCECSTKNCNAGSSNISSNSNSNDNMANTNKYGYYNYKNNNRGRNHETNG
EPNEPTNNNAGNNKDNEEDVVDSGNNLDHNDVDNMSSEQQPDIIPYPPSV
GESSWKAEKLRQQHHWQQNT*
BS07853.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccn-PB | 470 | CG32183-PB | 1..470 | 1..470 | 2623 | 100 | Plus |
