Clone Sequence Records
BS07854.3prime Sequence
791 bp (790 high quality bases) assembled on 2006-01-06
> BS07854.3prime
ATGGTCTGGAAAGCTTCTAGAACTTGGAGTCATCGTTTCGGTGGACATGT
CGTCGCTTGCGACCGTTGCAGTGGCGTCCATAGAATCCCGGATGGCACTT
GCAGTGCTTGTGGGAGACGCAGGTGCCATTGCGACACTTGCAGATGGAGC
GCTGCTTGCGCCCGATCTCGCAGTGATCGCCTCGTAGTCCGTTGGGGCAG
CGGCACAGGTTGTTCCCGATGCACCGTCCCTCGTTCTTGCAGGGGATCAC
ACACTTGGAGTACTCGCAACGCAGGCCGTAGTAACCCTTGGAGCACTGGC
ACTTGTCCTTCTGTATACACTTGCCGCCATTCAAGCACTTGTCCTTGCAA
ATACCACCTTCGCACTGCGTGCCCTGGTAGCCCTCCGGACAGGTGCAGAC
GGACGGCGCCGTGCAGTTACCGCCATTGAGACACTGCGGAAAACAGAAGG
CCGTCTCGCAGTATTGGCCCGTGTAGCCCACGTTGCACTTGCAGATGTGG
TGCTCGTTGCAGTACCCGTTCTTGCCGCACTTCAAGCTGCATTCTTGCAA
AGTTGTTAGTGAAGTAGGGTTGGAAGCGTCTATATCATACACACCTCTGT
GGGCGCATTCCTTTTTGAAGTTGAGGCGAATGGGTGTGCCCGAGAGCGGC
TTGTTGTGGCGCGTCTGGATCTTGAGGCCGACGTTGAAGGACGCGGTGCC
GGAGCTGTTGCCGGTGCAGGGCAGGAATATGCTAAAATTTTTCTGCTCCT
GCGGAATGCGTCCGCTCTTGCGAATGGACAGCGTTGGCGCC
BS07854.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3135-PA | 1371 | shf-RA | 597..1371 | 791..17 | 3875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shf-RA | 1784 | CG3135-RA | 857..1631 | 791..17 | 3875 | 100 | Minus |
| shf-RB | 1796 | CG3135-RB | 857..1643 | 791..17 | 3745 | 98.5 | Minus |
| shf-RD | 1745 | CG3135-RD | 1064..1592 | 545..17 | 2645 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6771732..6771934 | 56..258 | 1000 | 99.5 | Plus |
| X | 23542271 | X | 6773915..6774109 | 544..738 | 975 | 100 | Plus |
| X | 23542271 | X | 6773058..6773251 | 352..545 | 970 | 100 | Plus |
| X | 23542271 | X | 6772005..6772101 | 259..355 | 485 | 100 | Plus |
| X | 23542271 | X | 6774183..6774235 | 739..791 | 265 | 100 | Plus |
| X | 23542271 | X | 6771616..6771659 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 14:27:40 has no hits.
BS07854.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:47 Download gff for
BS07854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shf-PA | 597..1371 | 17..791 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:32 Download gff for
BS07854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3135-PA | 597..1371 | 17..791 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:03:24 Download gff for
BS07854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shf-RA | 857..1638 | 8..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:34:48 Download gff for
BS07854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shf-RA | 857..1638 | 8..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:34:48 Download gff for
BS07854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6773061..6773249 | 355..543 | 100 | <- | Plus |
| X | 6771609..6771659 | 8..60 | 92 | <- | Plus |
| X | 6771737..6771934 | 61..258 | 100 | <- | Plus |
| X | 6772005..6772100 | 259..354 | 100 | <- | Plus |
| X | 6773915..6774109 | 544..738 | 100 | <- | Plus |
| X | 6774183..6774235 | 739..791 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:03:24 Download gff for
BS07854.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6665642..6665692 | 8..60 | 92 | <- | Plus |
| arm_X | 6665770..6665967 | 61..258 | 100 | <- | Plus |
| arm_X | 6666038..6666133 | 259..354 | 100 | <- | Plus |
| arm_X | 6667094..6667282 | 355..543 | 100 | <- | Plus |
| arm_X | 6667948..6668142 | 544..738 | 100 | <- | Plus |
| arm_X | 6668216..6668268 | 739..791 | 100 | | Plus |
BS07854.5prime Sequence
946 bp (793 high quality bases) assembled on 2006-01-06
> BS07854.5prime
GAAGTTATCAGTCGACATGACACATCAGGGCATCGGCTGCCTGGTCAAGT
GGTTATATCTGGTGCTGATCGTGCACACGCTCCTCTGCATCGGCCAGCTC
GAGTGTCGCCAGCAGCACCACAATCGGAATAACAATAATAATAACAGAAG
AGCGGACTCGTCCAGCTCAGAGGAGGGCCACGGCAACACCAGCGATGGCC
TGGACAACTTCGCAGATCAGGACGCCAGCTTCGTTGGCCATGGACACCAG
CCGCGTCGGGGTCAACGAAAGAAACAGCAGGGAGGTGGAGGAGGAGGCAG
CGGCGGCGGCGGCGGAAACGGAGGAGGCGGTGGAAGCCGGCACAATCGCA
ACGAGGAGAGCGGCATCTCGTTGTGGATCAATGAGCAGCAGCTCAAAATG
CTTACAGCGCTCTACTTCCCACAGGGCTACTCGGAGCGCCTGTACGCCAT
TCACAACAGCCGGGTGACCAATGATCTGAGGGACACGACGCTGTACAACT
TCCTGGTAATCCCATCGGAGGTCAACTACGTTAACTTCACATGGAAGTCG
GGGCGCCGCAAATACTTCTACGACTTTGACCGCCTGCAGACCATGGATGA
AAGTATCTTGAAGGCGCCAACGCTGTCCATTCGCAAGAGCGGACGCATTC
CGCAGGAGCAGAAAAATTTTAGCATATTCCTGCCCTGCACCGGCAACAGC
TCCGGCACCGCGTCCTTCAACGTCGGCCTCAAGATCCAGACGCGCCACAA
CAAGCCGCTCTCGGGCACACCCATTCGCCTCAACTTCAAAAAGGAATGCG
CCCACAGAGGTGTGTATGATATAGACGCTTCCAACCCTACTTCACTAACA
ACTTTGCAAGAATGCAGCTTGAAGTGCGGCAAGAACGGGTACTGCAACGA
GCACCACATCTGCAAGTGCAACGTGGGCTACACGGGGCAATACTGC
BS07854.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3135-PA | 1371 | shf-RA | 1..930 | 17..946 | 4625 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shf-RA | 1784 | CG3135-RA | 261..1190 | 17..946 | 4635 | 99.9 | Plus |
| shf-RB | 1796 | CG3135-RB | 261..1202 | 17..946 | 4505 | 98.6 | Plus |
| shf-RD | 1745 | CG3135-RD | 261..1053 | 17..809 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:08:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6774561..6774951 | 407..17 | 1955 | 100 | Minus |
| X | 23542271 | X | 6774183..6774444 | 665..404 | 1310 | 100 | Minus |
| X | 23542271 | X | 6773915..6774109 | 860..666 | 975 | 100 | Minus |
| X | 23542271 | X | 6773164..6773251 | 946..859 | 425 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:08:17 has no hits.
BS07854.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:49 Download gff for
BS07854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shf-PA | 1..930 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:33 Download gff for
BS07854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3135-PA | 1..930 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:47:36 Download gff for
BS07854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shf-RA | 261..1190 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:34:21 Download gff for
BS07854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shf-RA | 261..1190 | 17..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:34:21 Download gff for
BS07854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6773164..6773249 | 861..946 | 98 | <- | Minus |
| X | 6773915..6774109 | 666..860 | 100 | <- | Minus |
| X | 6774183..6774440 | 408..665 | 100 | <- | Minus |
| X | 6774561..6774951 | 17..407 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:47:36 Download gff for
BS07854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6667197..6667282 | 861..946 | 98 | <- | Minus |
| arm_X | 6667948..6668142 | 666..860 | 100 | <- | Minus |
| arm_X | 6668216..6668473 | 408..665 | 100 | <- | Minus |
| arm_X | 6668594..6668984 | 17..407 | 100 | | Minus |
BS07854.complete Sequence
1403 bp assembled on 2009-02-12
> BS07854.complete
GAAGTTATCAGTCGACATGACACATCAGGGCATCGGCTGCCTGGTCAAGT
GGTTATATCTGGTGCTGATCGTGCACACGCTCCTCTGCATCGGCCAGCTC
GAGTGTCGCCAGCAGCACCACAATCGGAATAACAATAATAATAACAGAAG
AGCGGACTCGTCCAGCTCAGAGGAGGGCCACGGCAACACCAGCGATGGCC
TGGACAACTTCGCAGATCAGGACGCCAGCTTCGTTGGCCATGGACACCAG
CCGCGTCGGGGTCAACGAAAGAAACAGCAGGGAGGTGGAGGAGGAGGCAG
CGGCGGCGGCGGCGGAAACGGAGGAGGCGGTGGAAGCCGGCACAATCGCA
ACGAGGAGAGCGGCATCTCGTTGTGGATCAATGAGCAGCAGCTCAAAATG
CTTACAGCGCTCTACTTCCCACAGGGCTACTCGGAGCGCCTGTACGCCAT
TCACAACAGCCGGGTGACCAATGATCTGAGGGACACGACGCTGTACAACT
TCCTGGTAATCCCATCGGAGGTCAACTACGTTAACTTCACATGGAAGTCG
GGGCGCCGCAAATACTTCTACGACTTTGACCGCCTGCAGACCATGGATGA
AAGTATCTTGAAGGCGCCAACGCTGTCCATTCGCAAGAGCGGACGCATTC
CGCAGGAGCAGAAAAATTTTAGCATATTCCTGCCCTGCACCGGCAACAGC
TCCGGCACCGCGTCCTTCAACGTCGGCCTCAAGATCCAGACGCGCCACAA
CAAGCCGCTCTCGGGCACACCCATTCGCCTCAACTTCAAAAAGGAATGCG
CCCACAGAGGTGTGTATGATATAGACGCTTCCAACCCTACTTCACTAACA
ACTTTGCAAGAATGCAGCTTGAAGTGCGGCAAGAACGGGTACTGCAACGA
GCACCACATCTGCAAGTGCAACGTGGGCTACACGGGCCAATACTGCGAGA
CGGCCTTCTGTTTTCCGCAGTGTCTCAATGGCGGTAACTGCACGGCGCCG
TCCGTCTGCACCTGTCCGGAGGGCTACCAGGGCACGCAGTGCGAAGGTGG
TATTTGCAAGGACAAGTGCTTGAATGGCGGCAAGTGTATACAGAAGGACA
AGTGCCAGTGCTCCAAGGGTTACTACGGCCTGCGTTGCGAGTACTCCAAG
TGTGTGATCCCCTGCAAGAACGAGGGACGGTGCATCGGGAACAACCTGTG
CCGCTGCCCCAACGGACTACGAGGCGATCACTGCGAGATCGGGCGCAAGC
AGCGCTCCATCTGCAAGTGTCGCAATGGCACCTGCGTCTCCCACAAGCAC
TGCAAGTGCCATCCGGGATTCTATGGACGCCACTGCAACGGTCGCAAGCG
ACGACATGTCCACCGAAACGATGACTCCAAGTTCTAGAAGCTTTCCAGAC
CAT
BS07854.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shf-RA | 1371 | CG3135-PA | 1..1371 | 17..1387 | 6855 | 100 | Plus |
| shf-RB | 1383 | CG3135-PB | 1..1383 | 17..1387 | 6700 | 99.1 | Plus |
| shf-RD | 1332 | CG3135-PD | 1..793 | 17..809 | 3965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shf-RA | 1784 | CG3135-RA | 261..1631 | 17..1387 | 6855 | 100 | Plus |
| shf-RB | 1796 | CG3135-RB | 261..1643 | 17..1387 | 6700 | 99.1 | Plus |
| shf-RD | 1745 | CG3135-RD | 261..1053 | 17..809 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6774561..6774951 | 407..17 | 1955 | 100 | Minus |
| X | 23542271 | X | 6774183..6774444 | 665..404 | 1310 | 100 | Minus |
| X | 23542271 | X | 6771732..6771934 | 1348..1146 | 1000 | 99.5 | Minus |
| X | 23542271 | X | 6773915..6774109 | 860..666 | 975 | 100 | Minus |
| X | 23542271 | X | 6773058..6773251 | 1052..859 | 970 | 100 | Minus |
| X | 23542271 | X | 6772005..6772101 | 1145..1049 | 485 | 100 | Minus |
| X | 23542271 | X | 6771616..6771659 | 1387..1344 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:16:37 has no hits.
BS07854.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:29 Download gff for
BS07854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shf-RA | 261..1631 | 17..1387 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:59 Download gff for
BS07854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shf-RA | 261..1631 | 17..1387 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:33 Download gff for
BS07854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shf-RA | 261..1631 | 17..1387 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:33 Download gff for
BS07854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6774183..6774440 | 408..665 | 100 | <- | Minus |
| X | 6773915..6774109 | 666..860 | 100 | <- | Minus |
| X | 6771616..6771659 | 1344..1387 | 100 | <- | Minus |
| X | 6771737..6771934 | 1146..1343 | 100 | <- | Minus |
| X | 6772005..6772100 | 1050..1145 | 100 | <- | Minus |
| X | 6773061..6773249 | 861..1049 | 100 | <- | Minus |
| X | 6774561..6774951 | 17..407 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:59 Download gff for
BS07854.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6668216..6668473 | 408..665 | 100 | <- | Minus |
| arm_X | 6667948..6668142 | 666..860 | 100 | <- | Minus |
| arm_X | 6665649..6665692 | 1344..1387 | 100 | <- | Minus |
| arm_X | 6665770..6665967 | 1146..1343 | 100 | <- | Minus |
| arm_X | 6666038..6666133 | 1050..1145 | 100 | <- | Minus |
| arm_X | 6667094..6667282 | 861..1049 | 100 | <- | Minus |
| arm_X | 6668594..6668984 | 17..407 | 100 | | Minus |
BS07854.pep Sequence
Translation from 16 to 1386
> BS07854.pep
MTHQGIGCLVKWLYLVLIVHTLLCIGQLECRQQHHNRNNNNNNRRADSSS
SEEGHGNTSDGLDNFADQDASFVGHGHQPRRGQRKKQQGGGGGGSGGGGG
NGGGGGSRHNRNEESGISLWINEQQLKMLTALYFPQGYSERLYAIHNSRV
TNDLRDTTLYNFLVIPSEVNYVNFTWKSGRRKYFYDFDRLQTMDESILKA
PTLSIRKSGRIPQEQKNFSIFLPCTGNSSGTASFNVGLKIQTRHNKPLSG
TPIRLNFKKECAHRGVYDIDASNPTSLTTLQECSLKCGKNGYCNEHHICK
CNVGYTGQYCETAFCFPQCLNGGNCTAPSVCTCPEGYQGTQCEGGICKDK
CLNGGKCIQKDKCQCSKGYYGLRCEYSKCVIPCKNEGRCIGNNLCRCPNG
LRGDHCEIGRKQRSICKCRNGTCVSHKHCKCHPGFYGRHCNGRKRRHVHR
NDDSKF*
BS07854.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:58:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shf-PA | 456 | CG3135-PA | 1..456 | 1..456 | 2579 | 100 | Plus |
| shf-PB | 460 | CG3135-PB | 1..460 | 1..456 | 2564 | 99.1 | Plus |
| shf-PD | 443 | CG3135-PD | 1..443 | 1..456 | 2469 | 96.7 | Plus |
| shf-PC | 439 | CG3135-PC | 1..439 | 1..456 | 2465 | 96.3 | Plus |
| NimB2-PA | 421 | CG31839-PA | 215..372 | 280..435 | 284 | 38 | Plus |
