Clone BS07855 Report

Search the DGRC for BS07855

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptVha55-RA
Protein status:BS07855.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07855.3prime Sequence

951 bp (877 high quality bases) assembled on 2006-01-06

> BS07855.3prime
ATGGTCTAGAAAGCTTCTAATGGCGCGAGTCCCTAGGGTAGAATTCGGCC
AGGATGGAGGCCGGGATACGCTTGAGCATCTCCTTGGGGAAGATACGCAG
CAGCTGCCAGCCAATGTCCAGGGATTCGAAGACAGTGCGGTTCTCATAGT
TGCCCTGCGAGATGAAGTTCTTCTCGAACTTGGTCAAGAACTCCAGATAC
AGCAGATCGTCGGGCGTCAGGGCCTCCTCACCCACCACAGCCTTCATGGC
CTGCACGTCCTTGCCGATGGCGTAGCAAGCGTACAGCTGGTTGGACACGT
CAGAGTGGTCCTTACGGGTCATGCCCTCGCCGATGGCAGACTTCATCAAA
CGCGACAGCGATGGCAGCACGTTGACTGGTGGGTAGATCTGTCTGTTGTG
CAGCTGACGATCGACGTAGATCTGGCCCTCGGTAATGTAACCGGTCAAAT
CGGGAATGGGATGGGTAATATCATCGTTAGGCATGGTCAGAATGGGGATC
TGGGTGATGGATCCGTTGCGTCCCTCCACACGACCGGCACGCTCGTAGAT
GGTGGCCAAATCGGTGTACATGTAACCGGGGAAACCACGACGACCGGGCA
CCTCCTCACGGGCAGCAGACACCTCACGCAGAGCCTCGGCGTACGAGGAC
ATGTCGGTAAGGATGACCAGCACGTGCTTCTCGCACTGGTAGGCCAAGAA
CTCGGCGGCAGTCAAAGCCAGGCGGGGAGTGATGATACGCTCGATGGTCG
GATCGTTGGCCAAGTTCAAGAACAGACACACGTTCTCCATGGAACCGTTC
TCCTCGAAGTCCTGCTTGAAGAATCGGGCAGTCTCCATGTTCACACCCAT
AGCGGCGAACACGATGGCGAAGTTGTCGGTGTGGTCATCCAGCACGGACT
TGCCCGGCAGCTTGACGAGACCGGCCTGACGACAGATCTGGGCGGCGATT
T

BS07855.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17369-PB 1473 Vha55-RB 539..1473 951..17 4675 100 Minus
CG17369-PA 1473 Vha55-RA 539..1473 951..17 4675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
Vha55-RC 2048 CG17369-RC 654..1589 951..16 4680 100 Minus
Vha55-RA 2658 CG17369-RA 719..1654 951..16 4680 100 Minus
Vha55-RB 2722 CG17369-RB 783..1718 951..16 4680 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12624965..12625762 154..951 3990 100 Plus
3R 32079331 3R 12624766..12624908 16..158 715 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:08:11 has no hits.

BS07855.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:50 Download gff for BS07855.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha55-PB 539..1473 17..951 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:35 Download gff for BS07855.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17369-PA 539..1473 17..951 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:41:07 Download gff for BS07855.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha55-RB 783..1727 7..951 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:49:46 Download gff for BS07855.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha55-RB 783..1727 7..951 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:49:46 Download gff for BS07855.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12624757..12624904 7..154 97 <- Plus
3R 12624966..12625762 155..951 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:41:07 Download gff for BS07855.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8450479..8450626 7..154 97 <- Plus
arm_3R 8450688..8451484 155..951 100   Plus

BS07855.5prime Sequence

949 bp (896 high quality bases) assembled on 2006-01-06

> BS07855.5prime
GAAGTTATCAGTCGACATGAACGCCCAACAAGCCCAGCGGGAACATGTCC
TCGCCGTCTCCCGGGACTTTATCTCCCAGCCCCGCTTGACTTACAAGACT
GTGTCTGGTGTGAACGGTCCCCTGGTCATTCTCGATGAGGTCAAGTTCCC
CAAGTTCGCCGAGATCGTGCAGCTGCGTCTGGCTGACGGTACTGTGCGCT
CCGGACAGGTGCTCGAGGTGAGCGGCTCCAAGGCCGTGGTCCAGGTGTTC
GAGGGCACCTCGGGCATCGATGCCAAGAACACGCTTTGCGAGTTCACCGG
CGACATTCTGCGCACGCCCGTGTCGGAGGATATGTTGGGCCGTGTGTTCA
ACGGTTCCGGCAAGCCCATCGACAAGGGACCCCCAATTCTGGCTGAGGAT
TTCCTGGACATCCAGGGCCAGCCCATCAACCCCTGGTCGCGTATCTACCC
CGAGGAGATGATCCAGACCGGTATCTCGGCCATCGATGTGATGAACTCGA
TTGCCCGTGGCCAGAAGATCCCCATCTTCTCCGCCGCCGGTCTGCCCCAC
AACGAAATCGCCGCCCAGATCTGTCGTCAGGCCGGTCTCGTCAAGCTGCC
GGGCAAGTCCGTGCTGGATGACCACACCGACAACTTCGCCATCGTGTTCG
CCGCTATGGGTGTGAACATGGAGACTGCCCGATTCTTCAAGCAGGACTTC
GAGGAGAACGGTTCCATGGAGAACGTGTGTCTGTTCTTGAACTTGGCCAA
CGATCCGACCATCGAGCGTATCATCACTCCCCGCCTGGCTTTGACTGCCG
CCGAGTTCTTGGCCTACCAGTGCGAGAAGCACGTGCTGGTCATCCTTACC
GACATGTCCTCGTACGCCGAGGCTCTGCGTGAGGTGTCTGCTGCCCGTGA
GGAGGTGCCCGGTCGTCGTGGTTTCCCCCGGTACATGTACACCGATTTG

BS07855.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17369-PB 1473 Vha55-RB 1..933 17..949 4615 99.7 Plus
CG17369-PA 1473 Vha55-RA 1..933 17..949 4615 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
Vha55-RC 2048 CG17369-RC 116..1048 17..949 4635 99.8 Plus
Vha55-RA 2658 CG17369-RA 181..1113 17..949 4635 99.8 Plus
Vha55-RB 2722 CG17369-RB 245..1177 17..949 4635 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12625368..12626227 949..90 4270 99.8 Minus
3R 32079331 3R 12627449..12627521 89..17 365 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:32:02 has no hits.

BS07855.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:51 Download gff for BS07855.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha55-PB 1..933 17..949 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:36 Download gff for BS07855.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17369-PA 1..933 17..949 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:00:14 Download gff for BS07855.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha55-RB 245..1177 17..949 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:18 Download gff for BS07855.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha55-RB 245..1177 17..949 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:18 Download gff for BS07855.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12625368..12626227 90..949 99 <- Minus
3R 12627449..12627521 17..89 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:00:14 Download gff for BS07855.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8451090..8451949 90..949 99 <- Minus
arm_3R 8453171..8453243 17..89 100   Minus

BS07855.complete Sequence

1505 bp (1505 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636011

> BS07855.complete
GAAGTTATCAGTCGACATGAACGCCCAACAAGCCCAGCGGGAACATGTCC
TCGCCGTCTCCCGGGACTTTATCTCCCAGCCCCGCTTGACTTACAAGACT
GTGTCTGGTGTGAACGGTCCCCTGGTCATTCTCGATGAGGTCAAGTTCCC
CAAGTTCGCCGAGATCGTGCAGCTGCGTCTGGCTGACGGTACTGTGCGCT
CCGGACAGGTGCTCGAGGTGAGCGGCTCCAAGGCCGTGGTCCAGGTGTTC
GAGGGCACCTCGGGCATCGATGCCAAGAACACGCTTTGCGAGTTCACCGG
CGACATTCTGCGCACGCCCGTGTCGGAGGATATGTTGGGCCGTGTGTTCA
ACGGTTCCGGCAAGCCCATCGACAAGGGACCCCCAATTCTGGCTGAGGAT
TTCCTGGACATCCAGGGCCAGCCCATCAACCCCTGGTCGCGTATCTACCC
CGAGGAGATGATCCAGACCGGTATCTCGGCCATCGATGTGATGAACTCGA
TTGCCCGTGGCCAGAAGATCCCCATCTTCTCCGCCGCCGGTCTGCCCCAC
AACGAAATCGCCGCCCAGATCTGTCGTCAGGCCGGTCTCGTCAAGCTGCC
GGGCAAGTCCGTGCTGGATGACCACACCGACAACTTCGCCATCGTGTTCG
CCGCTATGGGTGTGAACATGGAGACTGCCCGATTCTTCAAGCAGGACTTC
GAGGAGAACGGTTCCATGGAGAACGTGTGTCTGTTCTTGAACTTGGCCAA
CGATCCGACCATCGAGCGTATCATCACTCCCCGCCTGGCTTTGACTGCCG
CCGAGTTCTTGGCCTACCAGTGCGAGAAGCACGTGCTGGTCATCCTTACC
GACATGTCCTCGTACGCCGAGGCTCTGCGTGAGGTGTCTGCTGCCCGTGA
GGAGGTGCCCGGTCGTCGTGGTTTCCCCGGTTACATGTACACCGATTTGG
CCACCATCTACGAGCGTGCCGGTCGTGTGGAGGGACGCAACGGATCCATC
ACCCAGATCCCCATTCTGACCATGCCTAACGATGATATTACCCATCCCAT
TCCCGATTTGACCGGTTACATTACCGAGGGCCAGATCTACGTCGATCGTC
AGCTGCACAACAGACAGATCTACCCACCAGTCAACGTGCTGCCATCGCTG
TCGCGTTTGATGAAGTCTGCCATCGGCGAGGGCATGACCCGTAAGGACCA
CTCTGACGTGTCCAACCAGCTGTACGCTTGCTACGCCATCGGCAAGGACG
TGCAGGCCATGAAGGCTGTGGTGGGTGAGGAGGCCCTGACGCCCGACGAT
CTGCTGTATCTGGAGTTCTTGACCAAGTTCGAGAAGAACTTCATCTCGCA
GGGCAACTATGAGAACCGCACTGTCTTCGAATCCCTGGACATTGGCTGGC
AGCTGCTGCGTATCTTCCCCAAGGAGATGCTCAAGCGTATCCCGGCCTCC
ATCCTGGCCGAATTCTACCCTAGGGACTCGCGCCATTAGAAGCTTTCTAG
ACCAT

BS07855.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
Vha55-RC 1473 CG17369-PC 1..1473 17..1489 7365 100 Plus
Vha55-RA 1473 CG17369-PA 1..1473 17..1489 7365 100 Plus
Vha55-RB 1473 CG17369-PB 1..1473 17..1489 7365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
Vha55-RC 2048 CG17369-RC 116..1589 17..1490 7370 100 Plus
Vha55-RA 2658 CG17369-RA 181..1654 17..1490 7370 100 Plus
Vha55-RB 2722 CG17369-RB 245..1718 17..1490 7370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12624965..12626227 1352..90 6315 100 Minus
3R 32079331 3R 12624766..12624908 1490..1348 715 100 Minus
3R 32079331 3R 12627449..12627521 89..17 365 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:46:15 has no hits.

BS07855.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:44 Download gff for BS07855.complete
Subject Subject Range Query Range Percent Splice Strand
Vha55-RA 1..1473 17..1489 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:21 Download gff for BS07855.complete
Subject Subject Range Query Range Percent Splice Strand
Vha55-RA 181..1663 17..1499 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:39 Download gff for BS07855.complete
Subject Subject Range Query Range Percent Splice Strand
Vha55-RB 245..1717 17..1489 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:44 Download gff for BS07855.complete
Subject Subject Range Query Range Percent Splice Strand
Vha55-RA 181..1663 17..1499 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:09 Download gff for BS07855.complete
Subject Subject Range Query Range Percent Splice Strand
Vha55-RB 245..1717 17..1489 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:09 Download gff for BS07855.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12624767..12624904 1352..1489 100 <- Minus
3R 12624966..12626227 90..1351 100 <- Minus
3R 12627449..12627521 17..89 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:39 Download gff for BS07855.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8450489..8450626 1352..1489 100 <- Minus
arm_3R 8450688..8451949 90..1351 100 <- Minus
arm_3R 8453171..8453243 17..89 100   Minus

BS07855.pep Sequence

Translation from 16 to 1488

> BS07855.pep
MNAQQAQREHVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFAEI
VQLRLADGTVRSGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRT
PVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQ
TGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPGKSVL
DDHTDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIE
RIITPRLALTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGR
RGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTG
YITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSN
QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYEN
RTVFESLDIGWQLLRIFPKEMLKRIPASILAEFYPRDSRH*

BS07855.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
Vha55-PC 490 CG17369-PC 1..490 1..490 2515 100 Plus
Vha55-PA 490 CG17369-PA 1..490 1..490 2515 100 Plus
Vha55-PB 490 CG17369-PB 1..490 1..490 2515 100 Plus
ATPsyn-beta-PD 505 CG11154-PD 73..443 65..445 285 26.3 Plus
ATPsyn-beta-PA 505 CG11154-PA 73..443 65..445 285 26.3 Plus