Clone Sequence Records
BS07857.3prime Sequence
952 bp (822 high quality bases) assembled on 2006-01-06
> BS07857.3prime
ATGGTCTAGAAAGCTTTCAGTTGAATTCCAGAGTATTCGCCTCCGTCATC
GTCGTACGCATGCGGCTCTGGTCGCTCTGGGAACGACGAAGTCCGCCCGG
ACGCCATCCGCTCCTCCAGCGCTTAATGCATCCCAGCAAGGACCAGTTGA
TGGACTTGGAGCGACTCAGCACATAGACATACGGATCCGAGGTGAAGTGC
AGCGCCGTAAGAACATCGGCGATGATGAAGAACTTGTTCGATGCGGGCAC
CCGATTTGGAGCTATAGCCAACGGGATGGCGATCATCTGTGGCATCCAGC
AGATGACGAACGAGATGCTGAGGAACGCCATTAGTTTGGCGAACTTGATC
TCGACTGGCGAGGAGTCGGTGGCCGCCATTGTGACGCTAACGCTGTGCCT
GTACTGCCTTGCCGGCTGTACACTGCGATGGCTGTTTCCGCTTCCGGTGC
TCAGCTGCGTCTGGTAGAGGGTGGTGCCGCTGCTGCTCTCGGGATCGATG
CTGATGGCACTGTTTTTGTCCCTGGAAACCAGGTCGTAGTGCATATGCCG
CTTGGCCGTGCGACTCCTTCCGATCACACAGAGCAAGGTGTGGGCCACGA
AGAGGTTGCAGGCCACGATTACAATGCACAGCAGGGTACCGAAGACCATA
AAGAGCACCGCATACGTCTTGTTCCACACGCCCGGCGCATCGCGATATCG
TATACACTTAAGCTGGTCCGGATTGGATTCATCGATGTATGCACCAAAAC
CAACGAATGGCAGGAACGTGATCACCACGGCGATCATCAGAATGCTGTTG
ATGCTCTTGCGAATGAGCTCGTAGGTAATGTGCTTGTGGTAGATAAAGGG
TCTGGCTAGGGCCATCCATCTTTCTGCCGCCATAACTGCTGCAATGCATC
CAGAACTGAGCCCGAAAAATCGCCAAACCACGAGTTCCACGCAATCCACT
CG
BS07857.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7497-PA | 1320 | CG7497-RA | 385..1320 | 952..17 | 4655 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7497-RC | 1822 | CG7497-RC | 595..1530 | 952..17 | 4665 | 99.9 | Minus |
CG7497-RB | 1696 | CG7497-RB | 595..1530 | 952..17 | 4665 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17636945..17637301 | 640..284 | 1785 | 100 | Minus |
3L | 28110227 | 3L | 17637442..17637709 | 284..17 | 1340 | 100 | Minus |
3L | 28110227 | 3L | 17636691..17636888 | 834..637 | 990 | 100 | Minus |
3L | 28110227 | 3L | 17636416..17636535 | 952..833 | 585 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:33:19 has no hits.
BS07857.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:54 Download gff for
BS07857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-PA | 385..1320 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:41 Download gff for
BS07857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-PA | 385..1320 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:39:26 Download gff for
BS07857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RB | 595..1530 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:45 Download gff for
BS07857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RB | 595..1530 | 17..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:45 Download gff for
BS07857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17636416..17636535 | 833..952 | 99 | -> | Minus |
3L | 17636693..17636885 | 640..832 | 100 | -> | Minus |
3L | 17636946..17637301 | 284..639 | 100 | -> | Minus |
3L | 17637443..17637709 | 17..283 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:39:26 Download gff for
BS07857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17629516..17629635 | 833..952 | 99 | -> | Minus |
arm_3L | 17629793..17629985 | 640..832 | 100 | -> | Minus |
arm_3L | 17630046..17630401 | 284..639 | 100 | -> | Minus |
arm_3L | 17630543..17630809 | 17..283 | 100 | | Minus |
BS07857.5prime Sequence
913 bp (819 high quality bases) assembled on 2006-01-06
> BS07857.5prime
GAAGTTATCAGTCGACATGAAAAAGAAATATCGTTTGCGGCCAGTTAGAT
TTTCACCTGAATCACCTGCAATCGAACGCAATTATCATACCGGCAAAATG
GAAACCACAACACCTGTGCTCGACCTGTTGATGCCGCACAACTCAACTAC
TGTGGCGCCTCCGAAAGCGCTCTATGCAAATCGAAATCGCCTGATTATTG
GTGTTATTATCATGGTTCTGGGCGTTTTTGGCAATTCGCTGGCCCTTTTC
ATTTTGGCGCGCAAGAAGCTCAACAAAAACAGCAAATACACGCTCATGCT
GCGATGCCTGGCGACCAACAATCTGGTGGCTCTACTGGGCATGCTGACCA
CGACGCTGCTGAAAATGTATCTCTCAAAGGAAGTCCTGCAGTCGTTCATC
CGAGTGGATTGCGTGGGACTCGTGGTTTGGCGATTTTTCGGGCTCAGTTC
TGGATGCATTGCAGCAGTTATGGCGGCAGAAAGATGGATGGCCCTAGCCA
GACCCTTTATCTACCACAAGCACATTACCTACGAGCTCATTCGCAAGAGC
ATCAACAGCATTCTGATGATCGCCGTGGTGATCACGTTCCTGCCATTCGT
TGGTTTTGGTGCATACATCGATGAATCCAATCCGGACCAGCTTAAGTGTA
TACGATATCGCGATGCGCCGGGCGTGTGGAACAAGACGTATGCGGTGCTC
TTTATGGTCTTCGGTACCCTGCTGTGCATTGTAATCGTGGCCTGCAACCT
CTTCGTGGCCCACACCTTGCTCTGTGTGATCGGAAGGAGTCGCACGGCCA
AGCGGCATATGCACTACGACCTGTTTTCCAAGGACAAAAACAGTGCCATC
AGCATCGATCCCGAGAGCAGCAACGGCACCACCCTCTACCAGACGCAGCT
GACCACCGGAAGC
BS07857.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7497-PA | 1320 | CG7497-RA | 1..897 | 17..913 | 4385 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7497-RC | 1822 | CG7497-RC | 211..1107 | 17..913 | 4425 | 99.6 | Plus |
CG7497-RB | 1696 | CG7497-RB | 211..1107 | 17..913 | 4425 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:18:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17633659..17633945 | 17..303 | 1435 | 100 | Plus |
3L | 28110227 | 3L | 17636318..17636535 | 303..520 | 1090 | 100 | Plus |
3L | 28110227 | 3L | 17636691..17636888 | 519..716 | 990 | 100 | Plus |
3L | 28110227 | 3L | 17636945..17637145 | 713..913 | 945 | 98 | Plus |
Blast to na_te.dros performed 2015-02-11 14:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsub\bilbo | 5540 | Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). | 2733..2792 | 409..348 | 125 | 69.4 | Minus |
BS07857.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:55 Download gff for
BS07857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:42 Download gff for
BS07857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:36:19 Download gff for
BS07857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RB | 211..1107 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:56:00 Download gff for
BS07857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RB | 211..1107 | 17..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:56:00 Download gff for
BS07857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17636946..17637145 | 714..913 | 98 | | Plus |
3L | 17636319..17636535 | 304..520 | 100 | -> | Plus |
3L | 17636693..17636885 | 521..713 | 100 | -> | Plus |
3L | 17633659..17633945 | 17..303 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:36:19 Download gff for
BS07857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17630046..17630245 | 714..913 | 98 | | Plus |
arm_3L | 17626759..17627045 | 17..303 | 100 | -> | Plus |
arm_3L | 17629419..17629635 | 304..520 | 100 | -> | Plus |
arm_3L | 17629793..17629985 | 521..713 | 100 | -> | Plus |
BS07857.complete Sequence
1352 bp (1352 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636012
> BS07857.complete
GAAGTTATCAGTCGACATGAAAAAGAAATATCGTTTGCGGCCAGTTAGAT
TTTCACCTGAATCACCTGCAATCGAACGCAATTATCATACCGGCAAAATG
GAAACCACAACACCTGTGCTCGACCTGTTGATGCCGCACAACTCAACTAC
TGTGGCGCCTCCGAAAGCGCTCTATGCAAATCGAAATCGCCTGATTATTG
GTGTTATTATCATGGTTCTGGGCGTTTTTGGCAATTCGCTGGCCCTTTTC
ATTTTGGCGCGCAAGAAGCTCAACAAAAACAGCAAATACACGCTCATGCT
GCGATGCCTGGCGACCAACAATCTGGTGGCTCTACTGGGCATGCTGACCA
CGACGCTGCTGAAAATGTATCTCTCAAAGGAAGTCCTGCAGTCGTTCATC
CGAGTGGATTGCGTGGGACTCGTGGTTTGGCGATTTTTCGGGCTCAGTTC
TGGATGCATTGCAGCAGTTATGGCGGCAGAAAGATGGATGGCCCTAGCCA
GACCCTTTATCTACCACAAGCACATTACCTACGAGCTCATTCGCAAGAGC
ATCAACAGCATTCTGATGATCGCCGTGGTGATCACGTTCCTGCCATTCGT
TGGTTTTGGTGCATACATCGATGAATCCAATCCGGACCAGCTTAAGTGTA
TACGATATCGCGATGCGCCGGGCGTGTGGAACAAGACGTATGCGGTGCTC
TTTATGGTCTTCGGTACCCTGCTGTGCATTGTAATCGTGGCCTGCAACCT
CTTCGTGGCCCACACCTTGCTCTGTGTGATCGGAAGGAGTCGCACGGCCA
AGCGGCATATGCACTACGACCTGGTTTCCAGGGACAAAAACAGTGCCATC
AGCATCGATCCCGAGAGCAGCAGCGGCACCACCCTCTACCAGACGCAGCT
GAGCACCGGAAGCGGAAACAGCCATCGCAGTGTACAGCCGGCAAGGCAGT
ACAGGCACAGCGTTAGCGTCACAATGGCGGCCACCGACTCCTCGCCAGTC
GAGATCAAGTTCGCCAAACTAATGGCGTTCCTCAGCATCTCGTTCGTCAT
CTGCTGGATGCCACAGATGATCGCCATCCCGTTGGCTATAGCTCCAAATC
GGGTGCCCGCATCGAACAAGTTCTTCATCATCGCCGATGTTCTTACGGCG
CTGCACTTCACCTCGGATCCGTATGTCTATGTGCTGAGTCGCTCCAAGTC
CATCAACTGGTCCTTGCTGGGATGCATTAAGCGCTGGAGGAGCGGATGGC
GTCCGGGCGGACTTCGTCGTTCCCAGAGCGACCAGAGCCGCATGCGTACG
ACGATGACGGAGGCGAATACTCTGGAATTCAACTGAAAGCTTTCTAGACC
AT
BS07857.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7497-RC | 1239 | CG7497-PC | 1..1239 | 98..1336 | 6195 | 100 | Plus |
CG7497-RB | 1239 | CG7497-PB | 1..1239 | 98..1336 | 6195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7497-RC | 1822 | CG7497-RC | 211..1530 | 17..1336 | 6600 | 100 | Plus |
CG7497-RB | 1696 | CG7497-RB | 211..1530 | 17..1336 | 6600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17636945..17637301 | 713..1069 | 1785 | 100 | Plus |
3L | 28110227 | 3L | 17633659..17633945 | 17..303 | 1435 | 100 | Plus |
3L | 28110227 | 3L | 17637442..17637709 | 1069..1336 | 1340 | 100 | Plus |
3L | 28110227 | 3L | 17636318..17636535 | 303..520 | 1090 | 100 | Plus |
3L | 28110227 | 3L | 17636691..17636888 | 519..716 | 990 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsub\bilbo | 5540 | Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). | 2733..2792 | 409..348 | 125 | 69.4 | Minus |
BS07857.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:45 Download gff for
BS07857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RA | 1..1320 | 17..1336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:22 Download gff for
BS07857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RB | 211..1530 | 17..1336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:40 Download gff for
BS07857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RB | 211..1529 | 17..1335 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:46 Download gff for
BS07857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RA | 211..1530 | 17..1336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:26 Download gff for
BS07857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RB | 211..1529 | 17..1335 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:26 Download gff for
BS07857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17636693..17636885 | 521..713 | 100 | -> | Plus |
3L | 17633659..17633945 | 17..303 | 100 | -> | Plus |
3L | 17636319..17636535 | 304..520 | 100 | -> | Plus |
3L | 17637443..17637708 | 1070..1335 | 100 | | Plus |
3L | 17636946..17637301 | 714..1069 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:40 Download gff for
BS07857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17630543..17630808 | 1070..1335 | 100 | | Plus |
arm_3L | 17626759..17627045 | 17..303 | 100 | -> | Plus |
arm_3L | 17629419..17629635 | 304..520 | 100 | -> | Plus |
arm_3L | 17629793..17629985 | 521..713 | 100 | -> | Plus |
arm_3L | 17630046..17630401 | 714..1069 | 100 | -> | Plus |
BS07857.pep Sequence
Translation from 16 to 1335
> BS07857.pep
MKKKYRLRPVRFSPESPAIERNYHTGKMETTTPVLDLLMPHNSTTVAPPK
ALYANRNRLIIGVIIMVLGVFGNSLALFILARKKLNKNSKYTLMLRCLAT
NNLVALLGMLTTTLLKMYLSKEVLQSFIRVDCVGLVVWRFFGLSSGCIAA
VMAAERWMALARPFIYHKHITYELIRKSINSILMIAVVITFLPFVGFGAY
IDESNPDQLKCIRYRDAPGVWNKTYAVLFMVFGTLLCIVIVACNLFVAHT
LLCVIGRSRTAKRHMHYDLVSRDKNSAISIDPESSSGTTLYQTQLSTGSG
NSHRSVQPARQYRHSVSVTMAATDSSPVEIKFAKLMAFLSISFVICWMPQ
MIAIPLAIAPNRVPASNKFFIIADVLTALHFTSDPYVYVLSRSKSINWSL
LGCIKRWRSGWRPGGLRRSQSDQSRMRTTMTEANTLEFN*
BS07857.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7497-PC | 412 | CG7497-PC | 1..412 | 28..439 | 2114 | 100 | Plus |
CG7497-PB | 412 | CG7497-PB | 1..412 | 28..439 | 2114 | 100 | Plus |