Clone BS07857 Report

Search the DGRC for BS07857

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG7497-RB
Protein status:BS07857.pep: gold
Sequenced Size:16

Clone Sequence Records

BS07857.3prime Sequence

952 bp (822 high quality bases) assembled on 2006-01-06

> BS07857.3prime
ATGGTCTAGAAAGCTTTCAGTTGAATTCCAGAGTATTCGCCTCCGTCATC
GTCGTACGCATGCGGCTCTGGTCGCTCTGGGAACGACGAAGTCCGCCCGG
ACGCCATCCGCTCCTCCAGCGCTTAATGCATCCCAGCAAGGACCAGTTGA
TGGACTTGGAGCGACTCAGCACATAGACATACGGATCCGAGGTGAAGTGC
AGCGCCGTAAGAACATCGGCGATGATGAAGAACTTGTTCGATGCGGGCAC
CCGATTTGGAGCTATAGCCAACGGGATGGCGATCATCTGTGGCATCCAGC
AGATGACGAACGAGATGCTGAGGAACGCCATTAGTTTGGCGAACTTGATC
TCGACTGGCGAGGAGTCGGTGGCCGCCATTGTGACGCTAACGCTGTGCCT
GTACTGCCTTGCCGGCTGTACACTGCGATGGCTGTTTCCGCTTCCGGTGC
TCAGCTGCGTCTGGTAGAGGGTGGTGCCGCTGCTGCTCTCGGGATCGATG
CTGATGGCACTGTTTTTGTCCCTGGAAACCAGGTCGTAGTGCATATGCCG
CTTGGCCGTGCGACTCCTTCCGATCACACAGAGCAAGGTGTGGGCCACGA
AGAGGTTGCAGGCCACGATTACAATGCACAGCAGGGTACCGAAGACCATA
AAGAGCACCGCATACGTCTTGTTCCACACGCCCGGCGCATCGCGATATCG
TATACACTTAAGCTGGTCCGGATTGGATTCATCGATGTATGCACCAAAAC
CAACGAATGGCAGGAACGTGATCACCACGGCGATCATCAGAATGCTGTTG
ATGCTCTTGCGAATGAGCTCGTAGGTAATGTGCTTGTGGTAGATAAAGGG
TCTGGCTAGGGCCATCCATCTTTCTGCCGCCATAACTGCTGCAATGCATC
CAGAACTGAGCCCGAAAAATCGCCAAACCACGAGTTCCACGCAATCCACT
CG

BS07857.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7497-PA 1320 CG7497-RA 385..1320 952..17 4655 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7497-RC 1822 CG7497-RC 595..1530 952..17 4665 99.9 Minus
CG7497-RB 1696 CG7497-RB 595..1530 952..17 4665 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17636945..17637301 640..284 1785 100 Minus
3L 28110227 3L 17637442..17637709 284..17 1340 100 Minus
3L 28110227 3L 17636691..17636888 834..637 990 100 Minus
3L 28110227 3L 17636416..17636535 952..833 585 99.2 Minus
Blast to na_te.dros performed on 2015-02-10 21:33:19 has no hits.

BS07857.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:54 Download gff for BS07857.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7497-PA 385..1320 17..952 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:41 Download gff for BS07857.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7497-PA 385..1320 17..952 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:39:26 Download gff for BS07857.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 595..1530 17..952 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:45 Download gff for BS07857.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 595..1530 17..952 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:45 Download gff for BS07857.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17636416..17636535 833..952 99 -> Minus
3L 17636693..17636885 640..832 100 -> Minus
3L 17636946..17637301 284..639 100 -> Minus
3L 17637443..17637709 17..283 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:39:26 Download gff for BS07857.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17629516..17629635 833..952 99 -> Minus
arm_3L 17629793..17629985 640..832 100 -> Minus
arm_3L 17630046..17630401 284..639 100 -> Minus
arm_3L 17630543..17630809 17..283 100   Minus

BS07857.5prime Sequence

913 bp (819 high quality bases) assembled on 2006-01-06

> BS07857.5prime
GAAGTTATCAGTCGACATGAAAAAGAAATATCGTTTGCGGCCAGTTAGAT
TTTCACCTGAATCACCTGCAATCGAACGCAATTATCATACCGGCAAAATG
GAAACCACAACACCTGTGCTCGACCTGTTGATGCCGCACAACTCAACTAC
TGTGGCGCCTCCGAAAGCGCTCTATGCAAATCGAAATCGCCTGATTATTG
GTGTTATTATCATGGTTCTGGGCGTTTTTGGCAATTCGCTGGCCCTTTTC
ATTTTGGCGCGCAAGAAGCTCAACAAAAACAGCAAATACACGCTCATGCT
GCGATGCCTGGCGACCAACAATCTGGTGGCTCTACTGGGCATGCTGACCA
CGACGCTGCTGAAAATGTATCTCTCAAAGGAAGTCCTGCAGTCGTTCATC
CGAGTGGATTGCGTGGGACTCGTGGTTTGGCGATTTTTCGGGCTCAGTTC
TGGATGCATTGCAGCAGTTATGGCGGCAGAAAGATGGATGGCCCTAGCCA
GACCCTTTATCTACCACAAGCACATTACCTACGAGCTCATTCGCAAGAGC
ATCAACAGCATTCTGATGATCGCCGTGGTGATCACGTTCCTGCCATTCGT
TGGTTTTGGTGCATACATCGATGAATCCAATCCGGACCAGCTTAAGTGTA
TACGATATCGCGATGCGCCGGGCGTGTGGAACAAGACGTATGCGGTGCTC
TTTATGGTCTTCGGTACCCTGCTGTGCATTGTAATCGTGGCCTGCAACCT
CTTCGTGGCCCACACCTTGCTCTGTGTGATCGGAAGGAGTCGCACGGCCA
AGCGGCATATGCACTACGACCTGTTTTCCAAGGACAAAAACAGTGCCATC
AGCATCGATCCCGAGAGCAGCAACGGCACCACCCTCTACCAGACGCAGCT
GACCACCGGAAGC

BS07857.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7497-PA 1320 CG7497-RA 1..897 17..913 4385 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7497-RC 1822 CG7497-RC 211..1107 17..913 4425 99.6 Plus
CG7497-RB 1696 CG7497-RB 211..1107 17..913 4425 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17633659..17633945 17..303 1435 100 Plus
3L 28110227 3L 17636318..17636535 303..520 1090 100 Plus
3L 28110227 3L 17636691..17636888 519..716 990 100 Plus
3L 28110227 3L 17636945..17637145 713..913 945 98 Plus
Blast to na_te.dros performed 2015-02-11 14:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsub\bilbo 5540 Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). 2733..2792 409..348 125 69.4 Minus

BS07857.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:55 Download gff for BS07857.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7497-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:42 Download gff for BS07857.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7497-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:36:19 Download gff for BS07857.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 211..1107 17..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:56:00 Download gff for BS07857.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 211..1107 17..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:56:00 Download gff for BS07857.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17636946..17637145 714..913 98   Plus
3L 17636319..17636535 304..520 100 -> Plus
3L 17636693..17636885 521..713 100 -> Plus
3L 17633659..17633945 17..303 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:36:19 Download gff for BS07857.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17630046..17630245 714..913 98   Plus
arm_3L 17626759..17627045 17..303 100 -> Plus
arm_3L 17629419..17629635 304..520 100 -> Plus
arm_3L 17629793..17629985 521..713 100 -> Plus

BS07857.complete Sequence

1352 bp (1352 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636012

> BS07857.complete
GAAGTTATCAGTCGACATGAAAAAGAAATATCGTTTGCGGCCAGTTAGAT
TTTCACCTGAATCACCTGCAATCGAACGCAATTATCATACCGGCAAAATG
GAAACCACAACACCTGTGCTCGACCTGTTGATGCCGCACAACTCAACTAC
TGTGGCGCCTCCGAAAGCGCTCTATGCAAATCGAAATCGCCTGATTATTG
GTGTTATTATCATGGTTCTGGGCGTTTTTGGCAATTCGCTGGCCCTTTTC
ATTTTGGCGCGCAAGAAGCTCAACAAAAACAGCAAATACACGCTCATGCT
GCGATGCCTGGCGACCAACAATCTGGTGGCTCTACTGGGCATGCTGACCA
CGACGCTGCTGAAAATGTATCTCTCAAAGGAAGTCCTGCAGTCGTTCATC
CGAGTGGATTGCGTGGGACTCGTGGTTTGGCGATTTTTCGGGCTCAGTTC
TGGATGCATTGCAGCAGTTATGGCGGCAGAAAGATGGATGGCCCTAGCCA
GACCCTTTATCTACCACAAGCACATTACCTACGAGCTCATTCGCAAGAGC
ATCAACAGCATTCTGATGATCGCCGTGGTGATCACGTTCCTGCCATTCGT
TGGTTTTGGTGCATACATCGATGAATCCAATCCGGACCAGCTTAAGTGTA
TACGATATCGCGATGCGCCGGGCGTGTGGAACAAGACGTATGCGGTGCTC
TTTATGGTCTTCGGTACCCTGCTGTGCATTGTAATCGTGGCCTGCAACCT
CTTCGTGGCCCACACCTTGCTCTGTGTGATCGGAAGGAGTCGCACGGCCA
AGCGGCATATGCACTACGACCTGGTTTCCAGGGACAAAAACAGTGCCATC
AGCATCGATCCCGAGAGCAGCAGCGGCACCACCCTCTACCAGACGCAGCT
GAGCACCGGAAGCGGAAACAGCCATCGCAGTGTACAGCCGGCAAGGCAGT
ACAGGCACAGCGTTAGCGTCACAATGGCGGCCACCGACTCCTCGCCAGTC
GAGATCAAGTTCGCCAAACTAATGGCGTTCCTCAGCATCTCGTTCGTCAT
CTGCTGGATGCCACAGATGATCGCCATCCCGTTGGCTATAGCTCCAAATC
GGGTGCCCGCATCGAACAAGTTCTTCATCATCGCCGATGTTCTTACGGCG
CTGCACTTCACCTCGGATCCGTATGTCTATGTGCTGAGTCGCTCCAAGTC
CATCAACTGGTCCTTGCTGGGATGCATTAAGCGCTGGAGGAGCGGATGGC
GTCCGGGCGGACTTCGTCGTTCCCAGAGCGACCAGAGCCGCATGCGTACG
ACGATGACGGAGGCGAATACTCTGGAATTCAACTGAAAGCTTTCTAGACC
AT

BS07857.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7497-RC 1239 CG7497-PC 1..1239 98..1336 6195 100 Plus
CG7497-RB 1239 CG7497-PB 1..1239 98..1336 6195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7497-RC 1822 CG7497-RC 211..1530 17..1336 6600 100 Plus
CG7497-RB 1696 CG7497-RB 211..1530 17..1336 6600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17636945..17637301 713..1069 1785 100 Plus
3L 28110227 3L 17633659..17633945 17..303 1435 100 Plus
3L 28110227 3L 17637442..17637709 1069..1336 1340 100 Plus
3L 28110227 3L 17636318..17636535 303..520 1090 100 Plus
3L 28110227 3L 17636691..17636888 519..716 990 100 Plus
Blast to na_te.dros performed 2014-11-28 00:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsub\bilbo 5540 Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). 2733..2792 409..348 125 69.4 Minus

BS07857.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:45 Download gff for BS07857.complete
Subject Subject Range Query Range Percent Splice Strand
CG7497-RA 1..1320 17..1336 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:22 Download gff for BS07857.complete
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 211..1530 17..1336 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:40 Download gff for BS07857.complete
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 211..1529 17..1335 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:46 Download gff for BS07857.complete
Subject Subject Range Query Range Percent Splice Strand
CG7497-RA 211..1530 17..1336 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:26 Download gff for BS07857.complete
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 211..1529 17..1335 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:26 Download gff for BS07857.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17636693..17636885 521..713 100 -> Plus
3L 17633659..17633945 17..303 100 -> Plus
3L 17636319..17636535 304..520 100 -> Plus
3L 17637443..17637708 1070..1335 100   Plus
3L 17636946..17637301 714..1069 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:40 Download gff for BS07857.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17630543..17630808 1070..1335 100   Plus
arm_3L 17626759..17627045 17..303 100 -> Plus
arm_3L 17629419..17629635 304..520 100 -> Plus
arm_3L 17629793..17629985 521..713 100 -> Plus
arm_3L 17630046..17630401 714..1069 100 -> Plus

BS07857.pep Sequence

Translation from 16 to 1335

> BS07857.pep
MKKKYRLRPVRFSPESPAIERNYHTGKMETTTPVLDLLMPHNSTTVAPPK
ALYANRNRLIIGVIIMVLGVFGNSLALFILARKKLNKNSKYTLMLRCLAT
NNLVALLGMLTTTLLKMYLSKEVLQSFIRVDCVGLVVWRFFGLSSGCIAA
VMAAERWMALARPFIYHKHITYELIRKSINSILMIAVVITFLPFVGFGAY
IDESNPDQLKCIRYRDAPGVWNKTYAVLFMVFGTLLCIVIVACNLFVAHT
LLCVIGRSRTAKRHMHYDLVSRDKNSAISIDPESSSGTTLYQTQLSTGSG
NSHRSVQPARQYRHSVSVTMAATDSSPVEIKFAKLMAFLSISFVICWMPQ
MIAIPLAIAPNRVPASNKFFIIADVLTALHFTSDPYVYVLSRSKSINWSL
LGCIKRWRSGWRPGGLRRSQSDQSRMRTTMTEANTLEFN*

BS07857.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7497-PC 412 CG7497-PC 1..412 28..439 2114 100 Plus
CG7497-PB 412 CG7497-PB 1..412 28..439 2114 100 Plus