Clone BS07858 Report

Search the DGRC for BS07858

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG8861-RB
Protein status:BS07858.pep: gold
Sequenced Size:16

Clone Sequence Records

BS07858.3prime Sequence

573 bp (572 high quality bases) assembled on 2006-01-06

> BS07858.3prime
ATGGTCTAGAAAGCTTTTAACGTCGCGTATTCCAAAAATCAACGAATGTT
GGCCAAGCCACCGAAAGGATTGGCAGGGTCAACAGGATGACGGAGTAGGC
CAATTGGGTGCCAGAGTTGCATCCGTCCTCGGTGCAGCAATACGTTTGTG
TCTCCCAAATTTCTTTTTCCACACACTCGGTAGCACAATCGCGAACGGTC
GACAGTTCACTAACATATTTCACGCAGAACTTCTCGCTCTTCTTGGTGCA
CTCCTTCAGGTAGAGATGGGCAATGTCCGTGGTGTAGTTGGTGCAGGGCG
TAATGGAGCCCACGCCCTCGTTGTACTGGCCGCACATGTGGCACTTGAGC
CCGTCGGCGAATCCCAAGCTGCCGCTGCACAAGACGATGGCCACCAGAAT
GGCCAGCGTTTTCACATGGTAGCTGGACGCAATCGATCCTGGGGCTGATG
AGGATGTTGAATGCATATGCATTGACGGGGCCTTGTCCTCGTCCACGTTC
ACCGAGTTGACAGCTGCTTTTGTTGACATTGCTTCTTGGTTGCCGCTCGA
CATTTTCATGTCGACTGATAACT

BS07858.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8861-PA 543 CG8861-RA 1..543 559..17 2715 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8861-RB 1337 CG8861-RB 357..899 559..17 2715 100 Minus
CG8861-RC 2682 CG8861-RC 376..918 559..17 2715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9326688..9327026 221..559 1695 100 Plus
3R 32079331 3R 9295406..9295553 17..164 740 100 Plus
3R 32079331 3R 9295686..9295744 163..221 295 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:25:53 has no hits.

BS07858.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:57 Download gff for BS07858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8861-PA 1..543 17..559 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:44 Download gff for BS07858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8861-PA 1..543 17..559 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:16 Download gff for BS07858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8861-RC 372..918 17..564 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:24:59 Download gff for BS07858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8861-RC 372..918 17..564 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:24:59 Download gff for BS07858.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9295406..9295551 17..162 100 <- Plus
3R 9295686..9295743 163..220 100 <- Plus
3R 9326688..9327030 221..564 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:16 Download gff for BS07858.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5121128..5121273 17..162 100 <- Plus
arm_3R 5121408..5121465 163..220 100 <- Plus
arm_3R 5152410..5152752 221..564 99   Plus

BS07858.5prime Sequence

573 bp (572 high quality bases) assembled on 2006-01-06

> BS07858.5prime
GAAGTTATCAGTCGACATGAAAATGTCGAGCGGCAACCAAGAAGCAATGT
CAACAAAAGCAGCTGTCAACTCGGTGAACGTGGACGAGGACAAGGCCCCG
TCAATGCATATGCATTCAACATCCTCATCAGCCCCAGGATCGATTGCGTC
CAGCTACCATGTGAAAACGCTGGCCATTCTGGTGGCCATCGTCTTGTGCA
GCGGCAGCTTGGGATTCGCCGACGGGCTCAAGTGCCACATGTGCGGCCAG
TACAACGAGGGCGTGGGCTCCATTACGCCCTGCACCAACTACACCACGGA
CATTGCCCATCTCTACCTGAAGGAGTGCACCAAGAAGAGCGAGAAGTTCT
GCGTGAAATATGTTAGTGAACTGTCGACCGTTCGCGATTGTGCTACCGAG
TGTGTGGAAAAAGAAATTTGGGAGACACAAACGTATTGCTGCACCGAGGA
CGGATGCAACTCTGGCACCCAATTGGCCTACTCCGTCATCCTGTTGACCC
TGCCAATCCTTTCGGTGGCTTGGCCAACATTCGTTGATTTTTGGAATACG
CGACGTTAAAAGCTTTCTAGACC

BS07858.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8861-PA 543 CG8861-RA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8861-RB 1337 CG8861-RB 357..899 17..559 2715 100 Plus
CG8861-RC 2682 CG8861-RC 376..918 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9326688..9327026 355..17 1695 100 Minus
3R 32079331 3R 9295406..9295553 559..412 740 100 Minus
3R 32079331 3R 9295686..9295744 413..355 295 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:40:08 has no hits.

BS07858.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:58 Download gff for BS07858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8861-PA 1..543 17..559 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:45 Download gff for BS07858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8861-PA 1..543 17..559 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:27:06 Download gff for BS07858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8861-RC 372..918 12..559 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:05 Download gff for BS07858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8861-RC 372..918 12..559 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:05 Download gff for BS07858.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9295406..9295551 414..559 100 <- Minus
3R 9295686..9295743 356..413 100 <- Minus
3R 9326688..9327030 12..355 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:27:06 Download gff for BS07858.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5121128..5121273 414..559 100 <- Minus
arm_3R 5121408..5121465 356..413 100 <- Minus
arm_3R 5152410..5152752 12..355 99   Minus

BS07858.complete Sequence

575 bp (575 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636013

> BS07858.complete
GAAGTTATCAGTCGACATGAAAATGTCGAGCGGCAACCAAGAAGCAATGT
CAACAAAAGCAGCTGTCAACTCGGTGAACGTGGACGAGGACAAGGCCCCG
TCAATGCATATGCATTCAACATCCTCATCAGCCCCAGGATCGATTGCGTC
CAGCTACCATGTGAAAACGCTGGCCATTCTGGTGGCCATCGTCTTGTGCA
GCGGCAGCTTGGGATTCGCCGACGGGCTCAAGTGCCACATGTGCGGCCAG
TACAACGAGGGCGTGGGCTCCATTACGCCCTGCACCAACTACACCACGGA
CATTGCCCATCTCTACCTGAAGGAGTGCACCAAGAAGAGCGAGAAGTTCT
GCGTGAAATATGTTAGTGAACTGTCGACCGTTCGCGATTGTGCTACCGAG
TGTGTGGAAAAAGAAATTTGGGAGACACAAACGTATTGCTGCACCGAGGA
CGGATGCAACTCTGGCACCCAATTGGCCTACTCCGTCATCCTGTTGACCC
TGCCAATCCTTTCGGTGGCTTGGCCAACATTCGTTGATTTTTGGAATACG
CGACGTTAAAAGCTTTCTAGACCAT

BS07858.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8861-RB 537 CG8861-PB 1..537 23..559 2685 100 Plus
CG8861-RC 537 CG8861-PC 1..537 23..559 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8861-RB 1337 CG8861-RB 357..899 17..559 2715 100 Plus
CG8861-RC 2682 CG8861-RC 376..918 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9326688..9327026 355..17 1695 100 Minus
3R 32079331 3R 9295406..9295553 559..412 740 100 Minus
3R 32079331 3R 9295686..9295744 413..355 295 100 Minus
Blast to na_te.dros performed on 2014-11-28 07:58:20 has no hits.

BS07858.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:46 Download gff for BS07858.complete
Subject Subject Range Query Range Percent Splice Strand
CG8861-RA 1..543 17..559 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:20 Download gff for BS07858.complete
Subject Subject Range Query Range Percent Splice Strand
CG8861-RB 351..891 17..557 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:15 Download gff for BS07858.complete
Subject Subject Range Query Range Percent Splice Strand
CG8861-RC 376..916 17..557 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:46 Download gff for BS07858.complete
Subject Subject Range Query Range Percent Splice Strand
CG8861-RA 347..893 12..559 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:10 Download gff for BS07858.complete
Subject Subject Range Query Range Percent Splice Strand
CG8861-RC 376..916 17..557 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:10 Download gff for BS07858.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9295408..9295551 414..557 100 <- Minus
3R 9295686..9295743 356..413 100 <- Minus
3R 9326688..9327026 17..355 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:15 Download gff for BS07858.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5121130..5121273 414..557 100 <- Minus
arm_3R 5121408..5121465 356..413 100 <- Minus
arm_3R 5152410..5152748 17..355 100   Minus

BS07858.pep Sequence

Translation from 16 to 558

> BS07858.pep
MKMSSGNQEAMSTKAAVNSVNVDEDKAPSMHMHSTSSSAPGSIASSYHVK
TLAILVAIVLCSGSLGFADGLKCHMCGQYNEGVGSITPCTNYTTDIAHLY
LKECTKKSEKFCVKYVSELSTVRDCATECVEKEIWETQTYCCTEDGCNSG
TQLAYSVILLTLPILSVAWPTFVDFWNTRR*

BS07858.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8861-PB 178 CG8861-PB 1..178 3..180 950 100 Plus
CG8861-PC 178 CG8861-PC 1..178 3..180 950 100 Plus