Clone Sequence Records
BS07858.3prime Sequence
573 bp (572 high quality bases) assembled on 2006-01-06
> BS07858.3prime
ATGGTCTAGAAAGCTTTTAACGTCGCGTATTCCAAAAATCAACGAATGTT
GGCCAAGCCACCGAAAGGATTGGCAGGGTCAACAGGATGACGGAGTAGGC
CAATTGGGTGCCAGAGTTGCATCCGTCCTCGGTGCAGCAATACGTTTGTG
TCTCCCAAATTTCTTTTTCCACACACTCGGTAGCACAATCGCGAACGGTC
GACAGTTCACTAACATATTTCACGCAGAACTTCTCGCTCTTCTTGGTGCA
CTCCTTCAGGTAGAGATGGGCAATGTCCGTGGTGTAGTTGGTGCAGGGCG
TAATGGAGCCCACGCCCTCGTTGTACTGGCCGCACATGTGGCACTTGAGC
CCGTCGGCGAATCCCAAGCTGCCGCTGCACAAGACGATGGCCACCAGAAT
GGCCAGCGTTTTCACATGGTAGCTGGACGCAATCGATCCTGGGGCTGATG
AGGATGTTGAATGCATATGCATTGACGGGGCCTTGTCCTCGTCCACGTTC
ACCGAGTTGACAGCTGCTTTTGTTGACATTGCTTCTTGGTTGCCGCTCGA
CATTTTCATGTCGACTGATAACT
BS07858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8861-PA | 543 | CG8861-RA | 1..543 | 559..17 | 2715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8861-RB | 1337 | CG8861-RB | 357..899 | 559..17 | 2715 | 100 | Minus |
CG8861-RC | 2682 | CG8861-RC | 376..918 | 559..17 | 2715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9326688..9327026 | 221..559 | 1695 | 100 | Plus |
3R | 32079331 | 3R | 9295406..9295553 | 17..164 | 740 | 100 | Plus |
3R | 32079331 | 3R | 9295686..9295744 | 163..221 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:25:53 has no hits.
BS07858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:57 Download gff for
BS07858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8861-PA | 1..543 | 17..559 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:44 Download gff for
BS07858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8861-PA | 1..543 | 17..559 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:16 Download gff for
BS07858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8861-RC | 372..918 | 17..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:24:59 Download gff for
BS07858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8861-RC | 372..918 | 17..564 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:24:59 Download gff for
BS07858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9295406..9295551 | 17..162 | 100 | <- | Plus |
3R | 9295686..9295743 | 163..220 | 100 | <- | Plus |
3R | 9326688..9327030 | 221..564 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:16 Download gff for
BS07858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5121128..5121273 | 17..162 | 100 | <- | Plus |
arm_3R | 5121408..5121465 | 163..220 | 100 | <- | Plus |
arm_3R | 5152410..5152752 | 221..564 | 99 | | Plus |
BS07858.5prime Sequence
573 bp (572 high quality bases) assembled on 2006-01-06
> BS07858.5prime
GAAGTTATCAGTCGACATGAAAATGTCGAGCGGCAACCAAGAAGCAATGT
CAACAAAAGCAGCTGTCAACTCGGTGAACGTGGACGAGGACAAGGCCCCG
TCAATGCATATGCATTCAACATCCTCATCAGCCCCAGGATCGATTGCGTC
CAGCTACCATGTGAAAACGCTGGCCATTCTGGTGGCCATCGTCTTGTGCA
GCGGCAGCTTGGGATTCGCCGACGGGCTCAAGTGCCACATGTGCGGCCAG
TACAACGAGGGCGTGGGCTCCATTACGCCCTGCACCAACTACACCACGGA
CATTGCCCATCTCTACCTGAAGGAGTGCACCAAGAAGAGCGAGAAGTTCT
GCGTGAAATATGTTAGTGAACTGTCGACCGTTCGCGATTGTGCTACCGAG
TGTGTGGAAAAAGAAATTTGGGAGACACAAACGTATTGCTGCACCGAGGA
CGGATGCAACTCTGGCACCCAATTGGCCTACTCCGTCATCCTGTTGACCC
TGCCAATCCTTTCGGTGGCTTGGCCAACATTCGTTGATTTTTGGAATACG
CGACGTTAAAAGCTTTCTAGACC
BS07858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8861-PA | 543 | CG8861-RA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8861-RB | 1337 | CG8861-RB | 357..899 | 17..559 | 2715 | 100 | Plus |
CG8861-RC | 2682 | CG8861-RC | 376..918 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9326688..9327026 | 355..17 | 1695 | 100 | Minus |
3R | 32079331 | 3R | 9295406..9295553 | 559..412 | 740 | 100 | Minus |
3R | 32079331 | 3R | 9295686..9295744 | 413..355 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:40:08 has no hits.
BS07858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:25:58 Download gff for
BS07858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8861-PA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:45 Download gff for
BS07858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8861-PA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:27:06 Download gff for
BS07858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8861-RC | 372..918 | 12..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:05 Download gff for
BS07858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8861-RC | 372..918 | 12..559 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:05 Download gff for
BS07858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9295406..9295551 | 414..559 | 100 | <- | Minus |
3R | 9295686..9295743 | 356..413 | 100 | <- | Minus |
3R | 9326688..9327030 | 12..355 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:27:06 Download gff for
BS07858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5121128..5121273 | 414..559 | 100 | <- | Minus |
arm_3R | 5121408..5121465 | 356..413 | 100 | <- | Minus |
arm_3R | 5152410..5152752 | 12..355 | 99 | | Minus |
BS07858.complete Sequence
575 bp (575 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636013
> BS07858.complete
GAAGTTATCAGTCGACATGAAAATGTCGAGCGGCAACCAAGAAGCAATGT
CAACAAAAGCAGCTGTCAACTCGGTGAACGTGGACGAGGACAAGGCCCCG
TCAATGCATATGCATTCAACATCCTCATCAGCCCCAGGATCGATTGCGTC
CAGCTACCATGTGAAAACGCTGGCCATTCTGGTGGCCATCGTCTTGTGCA
GCGGCAGCTTGGGATTCGCCGACGGGCTCAAGTGCCACATGTGCGGCCAG
TACAACGAGGGCGTGGGCTCCATTACGCCCTGCACCAACTACACCACGGA
CATTGCCCATCTCTACCTGAAGGAGTGCACCAAGAAGAGCGAGAAGTTCT
GCGTGAAATATGTTAGTGAACTGTCGACCGTTCGCGATTGTGCTACCGAG
TGTGTGGAAAAAGAAATTTGGGAGACACAAACGTATTGCTGCACCGAGGA
CGGATGCAACTCTGGCACCCAATTGGCCTACTCCGTCATCCTGTTGACCC
TGCCAATCCTTTCGGTGGCTTGGCCAACATTCGTTGATTTTTGGAATACG
CGACGTTAAAAGCTTTCTAGACCAT
BS07858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8861-RB | 537 | CG8861-PB | 1..537 | 23..559 | 2685 | 100 | Plus |
CG8861-RC | 537 | CG8861-PC | 1..537 | 23..559 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8861-RB | 1337 | CG8861-RB | 357..899 | 17..559 | 2715 | 100 | Plus |
CG8861-RC | 2682 | CG8861-RC | 376..918 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9326688..9327026 | 355..17 | 1695 | 100 | Minus |
3R | 32079331 | 3R | 9295406..9295553 | 559..412 | 740 | 100 | Minus |
3R | 32079331 | 3R | 9295686..9295744 | 413..355 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:58:20 has no hits.
BS07858.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:46 Download gff for
BS07858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8861-RA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:20 Download gff for
BS07858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8861-RB | 351..891 | 17..557 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:15 Download gff for
BS07858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8861-RC | 376..916 | 17..557 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:46 Download gff for
BS07858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8861-RA | 347..893 | 12..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:10 Download gff for
BS07858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8861-RC | 376..916 | 17..557 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:10 Download gff for
BS07858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9295408..9295551 | 414..557 | 100 | <- | Minus |
3R | 9295686..9295743 | 356..413 | 100 | <- | Minus |
3R | 9326688..9327026 | 17..355 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:15 Download gff for
BS07858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5121130..5121273 | 414..557 | 100 | <- | Minus |
arm_3R | 5121408..5121465 | 356..413 | 100 | <- | Minus |
arm_3R | 5152410..5152748 | 17..355 | 100 | | Minus |
BS07858.pep Sequence
Translation from 16 to 558
> BS07858.pep
MKMSSGNQEAMSTKAAVNSVNVDEDKAPSMHMHSTSSSAPGSIASSYHVK
TLAILVAIVLCSGSLGFADGLKCHMCGQYNEGVGSITPCTNYTTDIAHLY
LKECTKKSEKFCVKYVSELSTVRDCATECVEKEIWETQTYCCTEDGCNSG
TQLAYSVILLTLPILSVAWPTFVDFWNTRR*
BS07858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8861-PB | 178 | CG8861-PB | 1..178 | 3..180 | 950 | 100 | Plus |
CG8861-PC | 178 | CG8861-PC | 1..178 | 3..180 | 950 | 100 | Plus |