Clone Sequence Records
BS07861.3prime Sequence
950 bp (785 high quality bases) assembled on 2006-01-06
> BS07861.3prime
ATGGTCTAGAAAGCTTTTACAATTCGGTGTGCTTGGGCTTGTTGAACAAT
CTCTCGCACAGTTTGGCCAAAATCTGGGACACCTCCAGTCGGTACTCGTC
CGTGCTGTTGGCATACCGATTGCGAACGGTTAATAGTGCATGCCTGAGAC
CGGAACTTTGCGACCACGTGCTGGTGCACATATCTTCGGTGGTCTCCAAT
GCGGTGGCAAACTGTTCCACCACCTCCGGTTGCTCTAGGAGGAGCAGGAA
CTCCTTGGTTAGCACAGTGTCCACCGCCGCGCAGTAGCCCGGCGTTTTCA
GCCACGACTCGAAGTCCAAGAGCACATATTGCGCCATTGTGGATGAGGCT
TCGGGATCATCTTTGCTGACATCCAGCACTGACCGCTTCTCCAGCACTAG
GTCGCTTATGAGAGTCACTACCTTCGCCTTGCTCCGCAGCTCCACATCCG
GACTCTGGAGCACCTTGATCAGAGCCTGTGTACCCGAGGTGGAAAGCACT
CGCTGCTGGGCTAGCGGAAATTTCCGCAACAAGGCTCCAAAGGCGTGCAA
TGCAGCGGAGATCTCACCGACATTTCCGGAACTGGTCAGAATCTGAGCCA
GATGAGACCCGAAATTCTTTTCGAACACCTTGATCTGGGCCTTGGGATTG
TTGCTCGCCAGCGAGCCCAACACACGCATGGCCGACACTCTCAGGGATGT
ACTGGTATCGTTCACAACAATGGGCAGTAGTACATCATCCAATCCCCCAT
TATCAATGAACATCAAGGCATTGTCTATCTGATGGAGCAAATACTCCAGA
TTTTCCAGGCAGTCCAGCTTGGAGCGCATCTCTGACTCTAGCGGCGTTCT
GCTGAAGTCCGAAACTGATCGATTAACTGGACGATCAGTTCTCCGTCGGT
GCGAAAGTTCTCTGGAACTCTTTGTACGCTTTGCGTAGCTCGGCATAGCT
BS07861.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10420-PA | 1290 | CG10420-RA | 449..1290 | 858..17 | 4185 | 99.8 | Minus |
| CG10420-PA | 1290 | CG10420-RA | 395..448 | 911..858 | 270 | 100 | Minus |
| CG10420-PA | 1290 | CG10420-RA | 355..394 | 950..911 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10420-RA | 1831 | CG10420-RA | 487..1422 | 950..17 | 4615 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25234045..25234980 | 17..950 | 4565 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:31:22 has no hits.
BS07861.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:03 Download gff for
BS07861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-PA | 355..1290 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:53 Download gff for
BS07861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-PA | 355..1290 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:43:17 Download gff for
BS07861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 487..1426 | 12..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:01 Download gff for
BS07861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 487..1426 | 12..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:01 Download gff for
BS07861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25234041..25234980 | 12..950 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:43:17 Download gff for
BS07861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21059763..21060702 | 12..950 | 99 | | Plus |
BS07861.5prime Sequence
915 bp (796 high quality bases) assembled on 2006-01-06
> BS07861.5prime
GAAGTTATCAGTCGACATGAGTGGCAAGCAGGTAGTCATCCTTCTGGGCA
GTGTCCTGATCCTGGGATGCTTACAAGTGGCAGCGGCAACGGAAACGGAT
AACAAAACCAACGATTTCGTGGCCACCGACGAATGGCAGACGATTGCGGA
AGGTCAAGCTATTCCAAGGGGCCTGCACGTGCGCATCAACCTACAAACGG
GGCTCAAGGAAGCCAAACTCTTAGACGAAAGCGAACGTGGCACGTCGCTG
CAGAGTCAACCGGATGATCAGAATGCTCGGGAATCTCACGATGACAACGA
ACCCCTGGCTCTGGACTATAAACCGGACATAATCGAGGAGTCTATACGGC
GGGTCAAGGAGCAGAAGAAGAGCTATGCCGAGCTACGCAAAGCGTACAAA
GAGTTCCAGAAGAACTTTCGCACCGACGGAGAACTGATCGTCCAGTTAAT
CGATCAGTTTCGGAACTTCAGCAGAACGCCGCTAGAGTCAGAGATGCGCT
CCAAGCTGGACTGCCTGGAAAATCTGGAGTATTTGCTCCATCAGATAGAC
AATGCCTTGATGTTCATTGATAATGGGGGATTGGATGATGTACTACTGCC
CATTGTTGTGAACGATACCAGTACATCCCTGAGAGTGTCGGCCATGCGTG
TGTTGGGCTCGCTGGCGAGCAACAATCCCAAGGCCCAGATCAAGGTGTTC
GAAAAGAATTTCGGGTCTCATCTGGCTCAGATTCTGACCAGTTCCGGAAA
TGTCGGTGAGATCTCCGCTGCATTGCACGCCTTTGGAGCCTTGTTGCGGA
AATTTCCGCTAGCCCAGCAGCGAGTGCTTTCCACCTCGGGTACACAGGCT
CTGATCAAGGTGCTCCAGAGTCGGGATGTGGAGCTGCGGAGCAAGGCGAA
GGTAGTGACTCTCAT
BS07861.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10420-PA | 1290 | CG10420-RA | 1..899 | 17..915 | 4470 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10420-RA | 1831 | CG10420-RA | 133..1031 | 17..915 | 4480 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25234436..25235200 | 915..151 | 3810 | 99.9 | Minus |
| 3R | 32079331 | 3R | 25235260..25235397 | 154..17 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:23:42 has no hits.
BS07861.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:04 Download gff for
BS07861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:20:54 Download gff for
BS07861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:08:38 Download gff for
BS07861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 129..1031 | 9..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:40:45 Download gff for
BS07861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 129..1031 | 9..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:40:45 Download gff for
BS07861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25234436..25235198 | 153..915 | 99 | <- | Minus |
| 3R | 25235262..25235401 | 9..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:08:38 Download gff for
BS07861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21060158..21060920 | 153..915 | 99 | <- | Minus |
| arm_3R | 21060984..21061123 | 9..152 | 97 | | Minus |
BS07861.complete Sequence
1322 bp assembled on 2009-02-12
> BS07861.complete
GAAGTTATCAGTCGACATGAGTGGCAAGCAGGTAGTCATCCTTCTGGGCA
GTGTCCTGATCCTGGGATGCTTACAAGTGGCAGCGGCAACGGAAACGGAT
AACAAAACCAACGATTTCGTGGCCACCGACGAATGGCAGACGATTGCGGA
AGGTCAAGCTATTCCAAGGGGCCTGCACGTGCGCATCAACCTACAAACGG
GGCTCAAGGAAGCCAAACTCTTAGACGAAAGCGAACGTGGCACGTCGCTG
CAGAGTCAACCGGATGATCAGAATGCTCGGGAATCTCACGATGACAACGA
ACCCCTGGCTCTGGACTATAAACCGGACATAATCGAGGAGTCTATACGGC
GGGTCAAGGAGCAGAAGAAGAGCTATGCCGAGCTACGCAAAGCGTACAAA
GAGTTCCAGAAGAACTTTCGCACCGACGGAGAACTGATCGTCCAGTTAAT
CGATCAGTTTCGGAACTTCAGCAGAACGCCGCTAGAGTCAGAGATGCGCT
CCAAGCTGGACTGCCTGGAAAATCTGGAGTATTTGCTCCATCAGATAGAC
AATGCCTTGATGTTCATTGATAATGGGGGATTGGATGATGTACTACTGCC
CATTGTTGTGAACGATACCAGTACATCCCTGAGAGTGTCGGCCATGCGTG
TGTTGGGCTCGCTGGCGAGCAACAATCCCAAGGCCCAGATCAAGGTGTTC
GAAAAGAATTTCGGGTCTCATCTGGCTCAGATTCTGACCAGTTCCGGAAA
TGTCGGTGAGATCTCCGCTGCATTGCACGCCTTTGGAGCCTTGTTGCGGA
AATTTCCGCTAGCCCAGCAGCGAGTGCTTTCCACCTCGGGTACACAGGCT
CTGATCAAGGTGCTCCAGAGTCCGGATGTGGAGCTGCGGAGCAAGGCGAA
GGTAGTGACTCTCATAAGCGACCTAGTGCTGGAGAAGCGGTCAGTGCTGG
ATGTCAGCAAAGATGATCCCGAAGCCTCATCCACAATGGCGCAATATGTG
CTCTTGGACTTCGAGTCGTGGCTGAAAACGCCGGGCTACTGCGCGGCGGT
GGACACTGTGCTAACCAAGGAGTTCCTGCTCCTCCTAGAGCAACCGGAGG
TGGTGGAACAGTTTGCCACCGCATTGGAGACCACCGAAGATATGTGCACC
AGCACGTGGTCGCAAAGTTCCGGTCTCAGGCATGCACTATTAACCGTTCG
CAATCGGTATGCCAACAGCACGGACGAGTACCGACTGGAGGTGTCCCAGA
TTTTGGCCAAACTGTGCGAGAGATTGTTCAACAAGCCCAAGCACACCGAA
TTGTAAAAGCTTTCTAGACCAT
BS07861.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10420-RA | 1290 | CG10420-PA | 1..1290 | 17..1306 | 6435 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:48:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10420-RA | 1831 | CG10420-RA | 133..1422 | 17..1306 | 6435 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25234045..25235200 | 1306..151 | 5765 | 99.9 | Minus |
| 3R | 32079331 | 3R | 25235260..25235397 | 154..17 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:48:11 has no hits.
BS07861.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:46 Download gff for
BS07861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 122..1409 | 17..1304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:20 Download gff for
BS07861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 133..1420 | 17..1304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:05 Download gff for
BS07861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 133..1420 | 17..1304 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:05 Download gff for
BS07861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25234047..25235198 | 153..1304 | 99 | <- | Minus |
| 3R | 25235262..25235397 | 17..152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:20 Download gff for
BS07861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21059769..21060920 | 153..1304 | 99 | <- | Minus |
| arm_3R | 21060984..21061119 | 17..152 | 100 | | Minus |
BS07861.pep Sequence
Translation from 16 to 1305
> BS07861.pep
MSGKQVVILLGSVLILGCLQVAAATETDNKTNDFVATDEWQTIAEGQAIP
RGLHVRINLQTGLKEAKLLDESERGTSLQSQPDDQNARESHDDNEPLALD
YKPDIIEESIRRVKEQKKSYAELRKAYKEFQKNFRTDGELIVQLIDQFRN
FSRTPLESEMRSKLDCLENLEYLLHQIDNALMFIDNGGLDDVLLPIVVND
TSTSLRVSAMRVLGSLASNNPKAQIKVFEKNFGSHLAQILTSSGNVGEIS
AALHAFGALLRKFPLAQQRVLSTSGTQALIKVLQSPDVELRSKAKVVTLI
SDLVLEKRSVLDVSKDDPEASSTMAQYVLLDFESWLKTPGYCAAVDTVLT
KEFLLLLEQPEVVEQFATALETTEDMCTSTWSQSSGLRHALLTVRNRYAN
STDEYRLEVSQILAKLCERLFNKPKHTEL*
BS07861.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10420-PA | 429 | CG10420-PA | 1..429 | 1..429 | 2146 | 100 | Plus |
