Clone Sequence Records
BS07865.3prime Sequence
873 bp (852 high quality bases) assembled on 2006-01-06
> BS07865.3prime
ATGGTCTAGAAAGCTTCTATTTCAGCATGTCTGCGTATCGAACTGGCAGA
TAGGCGAAGAAGGTTTTGAGCATGGATGAGCTTCTGGCCAAGTGGGGACT
CAGGGCACTCCAGCAGATTCTTGTCAGGGTCAGGATCTTGTCGTTGAGCG
GCATTCGGTATTCGGTTTTTAATTTCTTGCACAACGCCTCCAGACGTTTA
AAGTCGTCAAAAGTGTCCTTTGCCGAGAATCCTTCGCGCTTGGCGCTGGG
TGCTTCGTTTAGTTGGTTCTCAACATGCACAAATGTGGCCAGTCCCTTTT
CAATCGTATCAACAATCTCTTCGTGGCAGTAGGTCTTCCCATATCGACGC
TTAATCCACTCGACCATCACAAAGGATTTGTGCGAGTCGGGAAAAGCGGC
GAAGACGCAGCGTGGATCCTGCCTCAGTACGGAAAATCCATCCCGCAGCA
GGCGCTCCATTAAATGTTGGTTGTTGGGGTCGAACTTCTTGATTGTCTTT
GTCCAATCTAGGGCATCATTTGTTTTGCAGATTTCTTCCGGCTCATTTTT
GGCTGGCACTTCAATAGTCGTTGGTCTTTCGGATTGGCCAGATGACAGGC
GCCGTTGATGAGCCTCCAGGGAGCCAAACCACATGTTTTGGGCGCACTCA
ACGATGGCCGCCACCACCTGGTCTCGGGGATTGATCCGTCCGTTGTAGTT
ATCCTCGCTTGAGGGGCAACTTTGCTCCTTTAAGGTGCGAATGGCCTGNG
CACGAATCACATCCTTGGTATCTGGATTTTGATCCTGCGGTGCAACCGCA
TGGTATTTGAACACAAAGGGACTGTGCTGGTGAGGAGCTTCAAAAAAGCG
TCCTGGCTTCGATGGTTTCTTGC
BS07865.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14735-PA | 2136 | CG14735-RA | 1280..2136 | 873..17 | 4266 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp5-RA | 2384 | CG14735-RA | 1403..2259 | 873..17 | 4274 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12034544..12035400 | 873..17 | 4274 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-10 21:36:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 2632..2688 | 261..322 | 109 | 69.4 | Plus |
BS07865.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:11 Download gff for
BS07865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14735-PA | 1280..2136 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:05 Download gff for
BS07865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14735-PA | 1280..2136 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:40:00 Download gff for
BS07865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 1403..2259 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:18 Download gff for
BS07865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 1403..2259 | 17..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:18 Download gff for
BS07865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12034544..12035400 | 17..873 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:40:00 Download gff for
BS07865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7860266..7861122 | 17..873 | 99 | | Minus |
BS07865.5prime Sequence
872 bp (795 high quality bases) assembled on 2006-01-06
> BS07865.5prime
GAAGTTATCAGTCGACATGCTGGATAAGCCAGCCCCAGTGGGGGCCTCAT
GGTACACCAATCTGTCCGACTTCCAGGTGCAGGCCGTCGAGGCACTGGCC
TTCTCGATTCGGGATGACAATGCGGAGGGTACTGTGTACCGCACCCAGTT
CTGTCTCAGTCGCTTGGGAGTCACGCCCATGGTAAAGACCCGGATGTTGC
GGAAGCTAATTGGGATTTGTCGCGGCAGCGACTTGGCATTCCTTTACTTT
CTGATGGAGGCCTGCTATAAGGGCACAGGATCTGCGTACAGTGAACGGAT
CCTGATGTCCGCCATCACCTTTTTGGATCTGGAGATGACCATGAGGGAAC
TGGACAAAATACTGCCGCCGGGAGTGGAACGGCTGAATAAGAAAGAGTCG
ATAGCTCCGCCAGTGGATTATCGCTCCATGTCGTTGCCAACACCTTTACC
GACCAAACGGGAATCGGATCTCCGAAAGGTCCGCTCGCCCTACTTTACCC
CGTTGCCCAAACCAAAGCTACCCAAGGGTGGCGAGAAGTTCACTGCCAAG
AGACCCTGCCTCGTGGTCTCCTTTCCATTCTGGCCCGCTGGCGAGAGGCC
CAACTACAAGGTGAACGAGGAGAACCGCTGGTTCGCCGCTTACAGGTTCC
AGCCGGTGAAGCGGATGCTCTTCAAGATGGTCGGCGACATCATGACCGAC
TACTGGACAAAGATAGATGGTACTCAACCGGCGGAGAACGAAGCGATGCC
CATGTGCGAGTTCCACAAGGAGGCACTGCGGCAGGAGCAGCTGGTGAAGG
ATGCAGCTGTGGTCAAGGCCCACAAACAGTGCTTGGCTCTCGTGGATATC
ACTTCACGGCAGGATGCCCTCC
BS07865.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14735-PA | 2136 | CG14735-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp5-RA | 2384 | CG14735-RA | 123..979 | 16..872 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:22:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12033264..12034120 | 16..872 | 4285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:22:32 has no hits.
BS07865.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:12 Download gff for
BS07865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14735-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:07 Download gff for
BS07865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14735-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:08:14 Download gff for
BS07865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 116..979 | 10..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:37:51 Download gff for
BS07865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 116..979 | 10..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:37:51 Download gff for
BS07865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12033257..12034120 | 10..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:08:14 Download gff for
BS07865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7858979..7859842 | 10..872 | 99 | | Plus |
BS07865.complete Sequence
2168 bp assembled on 2008-01-03
GenBank Submission: FJ636014
> BS07865.complete
GAAGTTATCAGTCGACATGCTGGATAAGCCAGCCCCAGTGGGGGCCTCAT
GGTACACCAATCTGTCCGACTTCCAGGTGCAGGCCGTCGAGGCACTGGCC
TTCTCGATTCGGGATGACAATGCGGAGGGTACTGTGTACCGCACCCAGTT
CTGTCTCAGTCGCTTGGGAGTCACGCCCATGGTAAAGACCCGGATGTTGC
GGAAGCTAATTGGGATTTGTCGCGGCAGCGACTTGGCATTCCTTTACTTT
CTGATGGAGGCCTGCTATAAGGGCACAGGATCTGCGTACAGTGAACGGAT
CCTGATGTCCGCCATCACCTTTTTGGATCTGGAGATGACCATGAGGGAAC
TGGACAAAATACTGCCGCCGGGAGTGGAACGGCTGAATAAGAAAGAGTCG
ATAGCTCCGCCAGTGGATTATCGCTCCATGTCGTTGCCAACACCTTTACC
GACCAAACGGGAATCGGATCTCCGAAAGGTCCGCTCGCCCTACTTTACCC
CGTTGCCCAAACCAAAGCTACCCAAGGGTGGCGAGAAGTTCACTGCCAAG
AGACCCTGCCTCGTGGTCTCCTTTCCATTCTGGCCCGCTGGCGAGAGGCC
CAACTACAAGGTGAACGAGGAGAACCGCTGGTTCGCCGCTTACAGGTTCC
AGCCGGTGAAGCGGATGCTCTTCAAGATGGTCGGCGACATCATGACCGAC
TACTGGACAAAGATAGATGGTACTCAACCGGCGGAGAACGAAGCGATGCC
CATGTGCGAGTTCCACAAGGAGGCACTGCGGCAGGAGCAGCTGGTGAAGG
ATGCAGCTGTGGTCAAGGCCCACAAACAGTGCTTGGCTCTCGTGGATATC
ACTTCACGGCAGGATGCCCTCCTTAAGAAACGTATCGTGGCCCAGTTGGA
AAGGGACATTGAGGAGGTCACGCTGCGTTGGAAACGACTTCGTGAGCGCC
ACCATACGGATGTCATGTTGTTGGAGGATCACGATCAGATGTGTTCGGTG
GGCAAAGTGCCTACGGCTGTGCAGGATATCAGGATAAAGTACCTATCCCA
GGAAGCGGACATCGGGCGTCTGAGTGCCAAACCCACCTTGGGTATCCATG
TGATCACCGGCAGGGGTAACGTGAGTCGGTTAAGTAAAGTGCGGGTCTCG
GATCCCGATGATGACATCCCATGCCCCACGGTACCCGTGGAGCAAAAGCT
GGCCAAATGTCCACCCCCTATACTGGGACACATCAAACGTCCGCGGAAGG
TGTCCATCACAAAATCCAAATTCGGCGACGATAAGCAGTCTTCCTGCAAG
AAACCATCGAAGCCAGGACGCTTTTTTGAAGCTCCTCACCAGCACAGTCC
CTTTGTGTTCAAATACCATGCGGTTGCACCGCAGGATCAAAATCCAGATA
CCAAGGATGTGATTCGTGCCCAGGCCATTCGCACCTTAAAGGAGCAAAGT
TGCCCCTCAAGCGAGGATAACTACAACGGACGGATCAATCCCCGAGACCA
GGTGGTGGCGGCCATCGTTGAGTGCGCCCAAAACATGTGGTTTGGCTCCC
TGGAGGCTCATCAACGGCGCCTGTCATCTGGCCAATCCGAAAGACCAACG
ACTATTGAAGTGCCAGCCAAAAATGAGCCGGAAGAAATCTGCAAAACAAA
TGATGCCCTAGATTGGACAAAGACAATCAAGAAGTTCGACCCCAACAACC
AACATTTAATGGAGCGCCTGCTGCGGGATGGATTTTCCGTACTGAGGCAG
GATCCACGCTGCGTCTTCGCCGCTTTTCCCGACTCGCACAAATCCTTTGT
GATGGTCGAGTGGATTAAGCGTCGATATGGGAAGACCTACTGCCACGAAG
AGATTGTTGATACGATTGAAAAGGGACTGGCCACATTTGTGCATGTTGAG
AACCAACTAAACGAAGCACCCAGCGCCAAGCGCGAAGGATTCTCGGCAAA
GGACACTTTTGACGACTTTAAACGTCTGGAGGCGTTGTGCAAGAAATTAA
AAACCGAATACCGAATGCCGCTCAACGACAAGATCCTGACCCTGACAAGA
ATCTGCTGGAGTGCCCTGAGTCCCCACTTGGCCAGAAGCTCATCCATGCT
CAAAACCTTCTTCGCCTATCTGCCAGTTCGATACGCAGACATGCTGAAAT
AGAAGCTTTCTAGACCAT
BS07865.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp5-RA | 2136 | CG14735-PA | 1..2136 | 17..2152 | 10680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp5-RA | 2384 | CG14735-RA | 123..2259 | 16..2152 | 10685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12033264..12035400 | 16..2152 | 10685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:06:12 has no hits.
BS07865.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:24 Download gff for
BS07865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 1..2136 | 17..2152 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:27 Download gff for
BS07865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 124..2253 | 17..2146 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:45:02 Download gff for
BS07865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 124..2253 | 17..2146 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:25 Download gff for
BS07865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 116..2259 | 10..2152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:32 Download gff for
BS07865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 124..2253 | 17..2146 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:32 Download gff for
BS07865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12033265..12035394 | 17..2146 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:45:02 Download gff for
BS07865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7858987..7861116 | 17..2146 | 100 | | Plus |
BS07865.pep Sequence
Translation from 16 to 2151
> BS07865.pep
MLDKPAPVGASWYTNLSDFQVQAVEALAFSIRDDNAEGTVYRTQFCLSRL
GVTPMVKTRMLRKLIGICRGSDLAFLYFLMEACYKGTGSAYSERILMSAI
TFLDLEMTMRELDKILPPGVERLNKKESIAPPVDYRSMSLPTPLPTKRES
DLRKVRSPYFTPLPKPKLPKGGEKFTAKRPCLVVSFPFWPAGERPNYKVN
EENRWFAAYRFQPVKRMLFKMVGDIMTDYWTKIDGTQPAENEAMPMCEFH
KEALRQEQLVKDAAVVKAHKQCLALVDITSRQDALLKKRIVAQLERDIEE
VTLRWKRLRERHHTDVMLLEDHDQMCSVGKVPTAVQDIRIKYLSQEADIG
RLSAKPTLGIHVITGRGNVSRLSKVRVSDPDDDIPCPTVPVEQKLAKCPP
PILGHIKRPRKVSITKSKFGDDKQSSCKKPSKPGRFFEAPHQHSPFVFKY
HAVAPQDQNPDTKDVIRAQAIRTLKEQSCPSSEDNYNGRINPRDQVVAAI
VECAQNMWFGSLEAHQRRLSSGQSERPTTIEVPAKNEPEEICKTNDALDW
TKTIKKFDPNNQHLMERLLRDGFSVLRQDPRCVFAAFPDSHKSFVMVEWI
KRRYGKTYCHEEIVDTIEKGLATFVHVENQLNEAPSAKREGFSAKDTFDD
FKRLEALCKKLKTEYRMPLNDKILTLTRICWSALSPHLARSSSMLKTFFA
YLPVRYADMLK*
BS07865.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp5-PA | 711 | CG14735-PA | 1..711 | 1..711 | 3750 | 100 | Plus |
| CG13127-PA | 734 | CG13127-PA | 17..708 | 12..709 | 467 | 24.2 | Plus |
| CG9861-PA | 898 | CG9861-PA | 17..330 | 10..323 | 438 | 35.1 | Plus |
| CG42820-PA | 689 | CG13394-PB | 7..670 | 2..703 | 427 | 24.2 | Plus |
| CG9861-PA | 898 | CG9861-PA | 626..860 | 456..702 | 278 | 29.2 | Plus |
| CG15548-PA | 814 | CG15548-PA | 27..324 | 4..295 | 266 | 28.1 | Plus |
