Clone Sequence Records
BS07869.3prime Sequence
913 bp (796 high quality bases) assembled on 2006-01-06
> BS07869.3prime
ATGGTCTAGAAAGCTTCTAATCCTTCTTAGTCTTCTGGGCGGCACTGGAT
CCGCAACAGAGTCGAAGGAGCCACACCCAACTGGCAATGATGCTGCCCAG
GACGAGGGCCAACACGGCATAGACATCCAGGGAGTAGTAAACGAATCGTG
ACATCTCGACGGCACTGGGCTTCAACAGAGGAGCTCCGCCAGTGTGGGCC
ACATGCTCCACCCACCAAATGGCTGTATGCAGGGCCTGCTGTGGGCGGTG
GTGGAACGAGTGGGAGACTACTTTGGCAGCATCGTGGAACTTTTTGTCCA
AAGCCTTCTTTAGTGCCCTCATCACCGTGTTTTCGCCTATATCCTCGAAA
TTCAGGATAGTTCCCATGCCTCGCTCGACCAAAGCGGCCGTATTGACAAA
CTGATCGCCATACATGGGCGTCGCAACCACTGGGACTCCACAGTAAGCTG
CCTCCGAGGTGCCCATGAGTCCGCCGTGGGACATGAACACCTTGACGTTG
GGATGGCAGAGGATATCGCGTTGTGGCAACCACTTCATAATGTGCATGTT
GGGTGGCTGGTTAGGCAGTGTTTCGTTTTCCCATTTCCAGATAACCTTCT
GCTTTAATCGAGCCACCGCCCGAATAATGCCATCCCTTTTCGCCGCCGAC
AGGGAATTCGCCCGGATCATTGATCCCCAACTAATCAGGATCACTCCTTC
CTCAGCATTGTCCAGAATGCGCTGCAGATCGGCAGGCAGAGGCTTCGATT
TCTGGATGTGGATGCCACCCAGCTCGATGACATTGGGCGGCGTTACCTTG
GGTCCAGACAGCGAGTAGTGCTGGTTCACAAAGAACATGGATGTGTTCTT
CACCAGCTCGCCCACCGAAAGCACGTCATGGCCGAATTTGTACTGAACCA
TGGCGTCGGCAGC
BS07869.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17323-PA | 1560 | CG17323-RA | 664..1560 | 913..17 | 4460 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17323-RD | 2212 | CG17323-RD | 803..1699 | 913..17 | 4470 | 99.9 | Minus |
CG17323-RC | 1988 | CG17323-RC | 742..1638 | 913..17 | 4470 | 99.9 | Minus |
CG17323-RE | 2112 | CG17323-RE | 866..1762 | 913..17 | 4470 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18825250..18825874 | 913..289 | 3110 | 99.8 | Minus |
2L | 23513712 | 2L | 18825930..18826203 | 290..17 | 1370 | 100 | Minus |
2L | 23513712 | 2L | 18828272..18828425 | 603..450 | 245 | 77.3 | Minus |
Blast to na_te.dros performed on 2015-02-02 20:08:09 has no hits.
BS07869.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:19 Download gff for
BS07869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17323-PA | 664..1560 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:17 Download gff for
BS07869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17323-PA | 664..1560 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:02:52 Download gff for
BS07869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17323-RE | 866..1764 | 12..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:13:38 Download gff for
BS07869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17323-RE | 866..1764 | 12..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:13:38 Download gff for
BS07869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18825250..18825872 | 291..913 | 99 | -> | Minus |
2L | 18825930..18826205 | 12..290 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:02:52 Download gff for
BS07869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18825250..18825872 | 291..913 | 99 | -> | Minus |
arm_2L | 18825930..18826205 | 12..290 | 98 | | Minus |
BS07869.5prime Sequence
907 bp (857 high quality bases) assembled on 2006-01-06
> BS07869.5prime
GAAGTTATCAGTCGACATGTGGTCGCCGCGGGTTGCCCTACTTTTCCTGG
CCCTAGCACTTAGCCAACCGGACGAGTTGGTGGAGGCCGCTGGTCCGCTG
AAGGTGCTGGGTCTTTTTCCCCATCCCGGAGTTAGCCACTTCCACTTCTT
CCACCCCATCATGAAGGGTCTGGCCGAGGCGGGTCATGACGTGAGCGTGG
TTTCCCACTTCCCGGACAAGCATCCGGTTGCCCACTACAAGGATTTCCCC
CTCACCGGAATGGACAAGCTCACGAACAGTGTTGATCTCAAGTTTTTCGA
GAAGCGCACATTCTACAGTCACTTCCAGGAGTTCTTCCTGCTGTACGACT
GGGGCAAACAGACATGCAACCTGACGCTCCGTTCGGAAGCACTGCAGCAG
ATCCTCAGGCGTCCGGGACGCTTTGATGTGATCATCATGGAGCAATTCAA
CACTGACTGCATGATGGGAGTGGCCCACCAGCTCCAGGCGCCGGTGATCG
CCTTGAGCAGCTGTGTGATGATGCCCTGGCACTACGAGCGAATGGGAGCT
CCTTTGATACCCTCTCACATCCCGGCGCTCTTCATGGCCCAGTCGCAGCA
CATGAACTTTGGGGGACGACTGGCCAATTGGTTCAGCACCCACGCCTTAA
ATTGGATGTACAAATTACTATCGGTTCCCGCTGCCGACGCCATGGTTCAG
TACAAATTCGGCCATGACGTGCCTTCGGTGGGCGAGCTGGTGAAGAACAC
ATCCATGTTCTTTGTGAACCAGCACTACTCGCTGTCTGGACCCAAGGTAA
CGCCGCCCAATGTCATCGAGCTGGGTGGCATCCACATCCAGAAATCGAAG
CCTCTGCCCTGCGATCTGCAGCGCATTCTGGACAATGCTGAGGAAGGAGT
GATCCTG
BS07869.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17323-PA | 1560 | CG17323-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
CG17323-PA | 1560 | CG17323-RA | 846..891 | 862..907 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17323-RD | 2212 | CG17323-RD | 140..1030 | 17..907 | 4410 | 99.8 | Plus |
CG17323-RC | 1988 | CG17323-RC | 79..969 | 17..907 | 4410 | 99.8 | Plus |
CG17323-RE | 2112 | CG17323-RE | 203..1093 | 17..907 | 4410 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18824795..18825167 | 291..663 | 1865 | 100 | Plus |
2L | 23513712 | 2L | 18824306..18824581 | 17..292 | 1380 | 100 | Plus |
2L | 23513712 | 2L | 18825234..18825477 | 664..907 | 1175 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:56:36 has no hits.
BS07869.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:20 Download gff for
BS07869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17323-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:19 Download gff for
BS07869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17323-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:42 Download gff for
BS07869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17323-RE | 203..1093 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:00 Download gff for
BS07869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17323-RE | 203..1093 | 17..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:00 Download gff for
BS07869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18824306..18824581 | 17..292 | 100 | -> | Plus |
2L | 18824797..18825167 | 293..663 | 100 | -> | Plus |
2L | 18825234..18825477 | 664..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:42 Download gff for
BS07869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18824306..18824581 | 17..292 | 100 | -> | Plus |
arm_2L | 18824797..18825167 | 293..663 | 100 | -> | Plus |
arm_2L | 18825234..18825477 | 664..907 | 99 | | Plus |
BS07869.complete Sequence
1592 bp (1592 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636015
> BS07869.complete
GAAGTTATCAGTCGACATGTGGTCGCCGCGGGTTGCCCTACTTTTCCTGG
CCCTAGCACTTAGCCAACCGGACGAGTTGGTGGAGGCCGCTGGTCCGCTG
AAGGTGCTGGGTCTTTTTCCCCATCCCGGAGTTAGCCACTTCCACTTCTT
CCACCCCATCATGAAGGGTCTGGCCGAGGCGGGTCATGACGTGAGCGTGG
TTTCCCACTTCCCGGACAAGCATCCGGTTGCCCACTACAAGGATTTCCCC
CTCACCGGAATGGACAAGCTCACGAACAGTGTTGATCTCAAGTTTTTCGA
GAAGCGCACATTCTACAGTCACTTCCAGGAGTTCTTCCTGCTGTACGACT
GGGGCAAACAGACATGCAACCTGACGCTCCGTTCGGAAGCACTGCAGCAG
ATCCTCAGGCGTCCGGGACGCTTTGATGTGATCATCATGGAGCAATTCAA
CACTGACTGCATGATGGGAGTGGCCCACCAGCTCCAGGCGCCGGTGATCG
CCTTGAGCAGCTGTGTGATGATGCCCTGGCACTACGAGCGAATGGGAGCT
CCTTTGATACCCTCTCACATCCCGGCGCTCTTCATGGCCCAGTCGCAGCA
CATGAACTTTGGGGGACGACTGGCCAATTGGTTCAGCACCCACGCCTTAA
ATTGGATGTACAAATTACTATCGGTTCCCGCTGCCGACGCCATGGTTCAG
TACAAATTCGGCCATGACGTGCCTTCGGTGGGCGAGCTGGTGAAGAACAC
ATCCATGTTCTTTGTGAACCAGCACTACTCGCTGTCTGGACCCAAGGTAA
CGCCGCCCAATGTCATCGAGCTGGGTGGCATCCACATCCAGAAATCGAAG
CCTCTGCCTGCCGATCTGCAGCGCATTCTGGACAATGCTGAGGAAGGAGT
GATCCTGATTAGTTGGGGATCAATGATCCGGGCGAATTCCCTGTCGGCGG
CGAAAAGGGATGGCATTATTCGGGCGGTGGCTCGATTAAAGCAGAAGGTT
ATCTGGAAATGGGAAAACGAAACACTGCCTAACCAGCCACCCAACATGCA
CATTATGAAGTGGTTGCCACAACGCGATATCCTCTGCCATCCCAACGTCA
AGGTGTTCATGTCCCACGGCGGACTCATGGGCACCTCGGAGGCAGCTTAC
TGTGGAGTCCCAGTGGTTGCGACGCCCATGTATGGCGATCAGTTTGTCAA
TACGGCCGCTTTGGTCGAGCGAGGCATGGGAACTATCCTGAATTTCGAGG
ATATAGGCGAAAACACGGTGATGAGGGCACTAAAGAAGGCTTTGGACAAA
AAGTTCCACGATGCTGCCAAAGTAGTCTCCCACTCGTTCCACCACCGCCC
ACAGCAGGCCCTGCATACAGCCATTTGGTGGGTGGAGCATGTGGCCCACA
CTGGCGGAGCTCCTCTGTTGAAGCCCAGTGCCGTCGAGATGTCACGATTC
GTTTACTACTCCCTGGATGTCTATGCCGTGTTGGCCCTCGTCCTGGGCAG
CATCATTGCCAGTTGGGTGTGGCTCCTTCGACTCTGTTGCGGATCCAGTG
CCGCCCAGAAGACTAAGAAGGATTAGAAGCTTTCTAGACCAT
BS07869.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17323-RD | 1560 | CG17323-PD | 1..1560 | 17..1576 | 7800 | 100 | Plus |
CG17323-RC | 1560 | CG17323-PC | 1..1560 | 17..1576 | 7800 | 100 | Plus |
CG17323-RE | 1560 | CG17323-PE | 1..1560 | 17..1576 | 7800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17323-RD | 2212 | CG17323-RD | 140..1699 | 17..1576 | 7800 | 100 | Plus |
CG17323-RC | 1988 | CG17323-RC | 79..1638 | 17..1576 | 7800 | 100 | Plus |
CG17323-RE | 2112 | CG17323-RE | 203..1762 | 17..1576 | 7800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18825234..18825874 | 664..1304 | 3205 | 100 | Plus |
2L | 23513712 | 2L | 18824795..18825167 | 291..663 | 1865 | 100 | Plus |
2L | 23513712 | 2L | 18824306..18824581 | 17..292 | 1380 | 100 | Plus |
2L | 23513712 | 2L | 18825930..18826203 | 1303..1576 | 1370 | 100 | Plus |
2L | 23513712 | 2L | 18828272..18828425 | 990..1143 | 245 | 77.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:19:06 has no hits.
BS07869.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:33 Download gff for
BS07869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17323-RA | 1..1560 | 17..1576 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:08 Download gff for
BS07869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17323-RA | 31..1592 | 17..1581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:52 Download gff for
BS07869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17323-RE | 203..1762 | 17..1576 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:33 Download gff for
BS07869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17323-RA | 31..1592 | 17..1581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:40 Download gff for
BS07869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17323-RE | 203..1762 | 17..1576 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:40 Download gff for
BS07869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18824306..18824581 | 17..292 | 100 | -> | Plus |
2L | 18825930..18826203 | 1303..1576 | 100 | | Plus |
2L | 18824797..18825167 | 293..663 | 100 | -> | Plus |
2L | 18825234..18825872 | 664..1302 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:52 Download gff for
BS07869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18824306..18824581 | 17..292 | 100 | -> | Plus |
arm_2L | 18824797..18825167 | 293..663 | 100 | -> | Plus |
arm_2L | 18825234..18825872 | 664..1302 | 100 | -> | Plus |
arm_2L | 18825930..18826203 | 1303..1576 | 100 | | Plus |
BS07869.pep Sequence
Translation from 16 to 1575
> BS07869.pep
MWSPRVALLFLALALSQPDELVEAAGPLKVLGLFPHPGVSHFHFFHPIMK
GLAEAGHDVSVVSHFPDKHPVAHYKDFPLTGMDKLTNSVDLKFFEKRTFY
SHFQEFFLLYDWGKQTCNLTLRSEALQQILRRPGRFDVIIMEQFNTDCMM
GVAHQLQAPVIALSSCVMMPWHYERMGAPLIPSHIPALFMAQSQHMNFGG
RLANWFSTHALNWMYKLLSVPAADAMVQYKFGHDVPSVGELVKNTSMFFV
NQHYSLSGPKVTPPNVIELGGIHIQKSKPLPADLQRILDNAEEGVILISW
GSMIRANSLSAAKRDGIIRAVARLKQKVIWKWENETLPNQPPNMHIMKWL
PQRDILCHPNVKVFMSHGGLMGTSEAAYCGVPVVATPMYGDQFVNTAALV
ERGMGTILNFEDIGENTVMRALKKALDKKFHDAAKVVSHSFHHRPQQALH
TAIWWVEHVAHTGGAPLLKPSAVEMSRFVYYSLDVYAVLALVLGSIIASW
VWLLRLCCGSSAAQKTKKD*
BS07869.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17323-PD | 519 | CG17323-PD | 1..519 | 1..519 | 2768 | 100 | Plus |
CG17323-PC | 519 | CG17323-PC | 1..519 | 1..519 | 2768 | 100 | Plus |
CG17323-PE | 519 | CG17323-PE | 1..519 | 1..519 | 2768 | 100 | Plus |
CG17323-PA | 519 | CG17323-PA | 1..519 | 1..519 | 2768 | 100 | Plus |
CG17322-PB | 517 | CG17322-PB | 7..502 | 9..506 | 1570 | 59.8 | Plus |