Clone BS07872 Report

Search the DGRC for BS07872

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptSyp-RC
Protein status:BS07872.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07872.5prime Sequence

872 bp (810 high quality bases) assembled on 2006-01-06

> BS07872.5prime
GAAGTTATCAGTCGACATGGCGGAAGGTAATGGCGAACTGTTGGATGACA
TTAACCAGAAAGCCGATGACCGTGGCGATGGCGAGCGTACAGAGGATTAT
CCCAAGCTGCTGGAATACGGTCTGGACAAGAAGGTCGCCGGCAAACTGGA
TGAGATCTACAAAACCGGCAAGTTGGCTCACGCCGAGCTGGACGAGCGCG
CCCTGGACGCGCTCAAGGAGTTTCCCGTCGATGGTGCCTTGAATGTGTTG
GGACAGTTCCTGGAATCGAACCTGGAGCACGTGTCAAACAAGTCCGCCTA
CCTATGCGGCGTGATGAAGACGTACCGACAGAAGAGTCGAGCCAGCCAAC
AGGGCGTGGCCGCGCCCGCAACTGTCAAAGGTCCCGACGAGGACAAGATC
AAGAAAATCCTCGAGCGCACCGGCTACACATTAGATGTGACGACAGGTCA
GCGTAAATACGGCGGACCGCCGCCGCATTGGGAGGGAAATGTGCCAGGCA
ACGGTTGCGAGGTTTTCTGCGGCAAGATACCCAAGGACATGTACGAGGAC
GAACTGATTCCGCTATTCGAGAACTGCGGCATAATCTGGGACCTACGACT
CATGATGGACCCGATGACGGGCACAAATCGTGGTTATGCATTTGTCACAT
TCACAAATCGCGAAGCGGCCGTCAATGCAGTGCGACAGCTAAATGATTTT
GAAATTCGGACAGGCAAAAAGATTGGTGTTACGATATCATTTAACAATCA
CCGGCTATTTGTCGGCAATATACCTAAGAATAGAGATCGCGACGAATTAA
TTGAGGAATTTTCAAAACATGCACCTGGCCTATACGAGGTAATCATATAC
AGTTCGCCAGATGATAAGAAAA

BS07872.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17838-PB 1590 CG17838-RB 1..856 17..872 4280 100 Plus
CG17838-PA 1692 CG17838-RA 103..776 17..690 3370 100 Plus
CG17838-PC 1590 CG17838-RC 1..674 17..690 3370 100 Plus
CG17838-PF 1590 CG17838-RF 1..674 17..690 3370 100 Plus
CG17838-PD 2124 CG17838-RD 127..800 17..690 3370 100 Plus
CG17838-PE 1716 CG17838-RE 127..800 17..690 3370 100 Plus
CG17838-PA 1692 CG17838-RA 911..958 825..872 240 100 Plus
CG17838-PC 1590 CG17838-RC 809..856 825..872 240 100 Plus
CG17838-PF 1590 CG17838-RF 809..856 825..872 240 100 Plus
CG17838-PD 2124 CG17838-RD 935..982 825..872 240 100 Plus
CG17838-PE 1716 CG17838-RE 935..982 825..872 240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
Syp-RM 3407 CG17838-RM 611..1466 17..872 4280 100 Plus
Syp-RJ 2610 CG17838-RJ 350..1205 17..872 4280 100 Plus
Syp-RC 2740 CG17838-RC 1050..1905 17..872 4280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20791935..20792251 132..448 1585 100 Plus
3R 32079331 3R 20792311..20792555 444..688 1225 100 Plus
3R 32079331 3R 20795136..20795274 686..824 695 100 Plus
3R 32079331 3R 20791747..20791865 17..135 595 100 Plus
3R 32079331 3R 20797144..20797191 825..872 240 100 Plus
Blast to na_te.dros performed on 2015-02-09 22:11:21 has no hits.

BS07872.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:25 Download gff for BS07872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17838-PB 1..852 17..868 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:24 Download gff for BS07872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17838-PB 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:40 Download gff for BS07872.5prime
Subject Subject Range Query Range Percent Splice Strand
Syp-RC 1040..1901 8..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:41:39 Download gff for BS07872.5prime
Subject Subject Range Query Range Percent Splice Strand
Syp-RC 1040..1901 8..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:41:39 Download gff for BS07872.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20795139..20795274 689..824 100 -> Plus
3R 20791744..20791863 14..133 99 -> Plus
3R 20791937..20792249 134..446 100 -> Plus
3R 20792314..20792555 447..688 100 -> Plus
3R 20797144..20797187 825..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:40 Download gff for BS07872.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16617466..16617585 14..133 99 -> Plus
arm_3R 16617659..16617971 134..446 100 -> Plus
arm_3R 16618036..16618277 447..688 100 -> Plus
arm_3R 16620861..16620996 689..824 100 -> Plus
arm_3R 16622866..16622909 825..868 100   Plus

BS07872.3prime Sequence

976 bp (857 high quality bases) assembled on 2006-01-06

> BS07872.3prime
ATGGTCTAGAAAGCTTTTAACTCCATGCCGAAAACGTATCCATGTACCAC
TGTTCACCATTGGTGCCTAAAGGTTGCTGTGGTAGCGGTAAACTGCCCCA
ACTGCCGCCATTTCCTATTAAACCGCTCGGGTAACGTCGCTTAACATCTG
CCGGATTTTGGTGACCTCCATCGAACTTACGTTTACCGACTACGTATTCA
CGGGGTATCGGCGTACGCAGCGGCATGCGCGCCCCTGGGCGCATGGGCGT
CAAGGACATTATGCTAGGATGTGTCGGCGACAGGTTTCCCACGATCCCGG
GACGCGCTTGCATCATTTGCATCATGCGGCGCTCACGAGCACGCAGAATC
TCCTCCTTTTTCTTTTTGTCCGAGGGGGGTTTGGCTAGAGAGACCTCAAT
ATTCGAGGCGCCGATCTCCTTGCCATTAAGGCCACGCATAGCTTCGACGG
CGCTATCACGATCCTCAAAGTGTATAAAGGCATAGTCTTTAATTTTCTTA
ACGCGTTCCACTTTTCCGTATTGCTCAAATTGTTCCTTCAGTTTATCCTC
TGAGACGTCCTGGGTAAGATTTCGCACATAAAGAACTTTAACCTTGGACA
TTGTTTGCTCATCCGGCTCCTCCTGTGGATCGGCCCAGTCGACTATTATA
TCACATCCCCAAACCTTAATTCTTCCTGTGCCAAGTCTTCGTTTGGCCAA
AGACGCCGCCTTGTGTGACTCGTACTCAAGAAAGCAAAAGCCGCGATTCT
TTTTCTTATCATCTGGCGAACTGTATATGATTACCTCGTATAGGCCAGGT
GCATGTTTTGAAAATTCCTCAATTAATTCGTCGCGATCTCTATTCTTAGG
TATATTGCCGACAAATAGCCGGTGATTGTTAAATGATATCGTAACACCAA
TCTTTTTTGCCTGTCCGAAATTCAAAATCATTTAGCTGTCGCACTGCATT
GACGGCCGCTTCGCGATTTGTGAATG

BS07872.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17838-PB 1590 CG17838-RB 700..1590 907..17 4455 100 Minus
CG17838-PA 1692 CG17838-RA 911..1692 798..17 3910 100 Minus
CG17838-PC 1590 CG17838-RC 809..1590 798..17 3910 100 Minus
CG17838-PF 1590 CG17838-RF 809..1590 798..17 3910 100 Minus
CG17838-PE 1716 CG17838-RE 935..1716 798..17 3910 100 Minus
CG17838-PD 2124 CG17838-RD 935..1540 798..193 3030 100 Minus
CG17838-PB 1590 CG17838-RB 632..704 976..904 340 98.6 Minus
CG17838-PA 1692 CG17838-RA 734..776 976..934 215 100 Minus
CG17838-PC 1590 CG17838-RC 632..674 976..934 215 100 Minus
CG17838-PF 1590 CG17838-RF 632..674 976..934 215 100 Minus
CG17838-PE 1716 CG17838-RE 758..800 976..934 215 100 Minus
CG17838-PD 2124 CG17838-RD 758..800 976..934 215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
Syp-RC 2740 CG17838-RC 1681..2641 976..15 4770 99.8 Minus
Syp-RH 2214 CG17838-RH 1310..2115 820..15 3940 99.3 Minus
Syp-RE 6543 CG17838-RE 1136..1941 820..15 3940 99.3 Minus
Syp-RH 2214 CG17838-RH 1155..1197 976..934 215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20805946..20806124 193..15 895 100 Minus
3R 32079331 3R 20797534..20797678 537..393 725 100 Minus
3R 32079331 3R 20797144..20797279 798..663 680 100 Minus
3R 32079331 3R 20797343..20797474 666..535 660 100 Minus
3R 32079331 3R 20795136..20795274 938..799 635 98.6 Minus
3R 32079331 3R 20797745..20797853 396..288 545 100 Minus
3R 32079331 3R 20798314..20798409 288..193 480 100 Minus
3R 32079331 3R 20792515..20792555 976..936 205 100 Minus
Blast to na_te.dros performed on 2015-02-03 12:29:29 has no hits.

BS07872.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:24 Download gff for BS07872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17838-PB 632..1590 17..976 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:23 Download gff for BS07872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17838-PB 632..1590 17..976 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:50:35 Download gff for BS07872.3prime
Subject Subject Range Query Range Percent Splice Strand
Syp-RC 1681..2641 15..976 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:41:51 Download gff for BS07872.3prime
Subject Subject Range Query Range Percent Splice Strand
Syp-RC 1681..2641 15..976 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:41:51 Download gff for BS07872.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20792515..20792555 936..976 100 -> Minus
3R 20795139..20795274 799..935 98 -> Minus
3R 20797144..20797277 665..798 100 -> Minus
3R 20797345..20797473 536..664 100 -> Minus
3R 20797536..20797676 395..535 100 -> Minus
3R 20797747..20797853 288..394 100 -> Minus
3R 20798315..20798409 193..287 100 -> Minus
3R 20805947..20806124 15..192 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:50:35 Download gff for BS07872.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16623067..16623195 536..664 100 -> Minus
arm_3R 16618237..16618277 936..976 100 -> Minus
arm_3R 16620861..16620996 799..935 98 -> Minus
arm_3R 16622866..16622999 665..798 100 -> Minus
arm_3R 16623258..16623398 395..535 100 -> Minus
arm_3R 16623469..16623575 288..394 100 -> Minus
arm_3R 16624037..16624131 193..287 100 -> Minus
arm_3R 16631669..16631846 15..192 100   Minus

BS07872.complete Sequence

1622 bp (1622 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636016

> BS07872.complete
GAAGTTATCAGTCGACATGGCGGAAGGTAATGGCGAACTGTTGGATGACA
TTAACCAGAAAGCCGATGACCGTGGCGATGGCGAGCGTACAGAGGATTAT
CCCAAGCTGCTGGAATACGGTCTGGACAAGAAGGTCGCCGGCAAACTGGA
TGAGATCTACAAAACCGGCAAGTTGGCTCACGCCGAGCTGGACGAGCGCG
CCCTGGACGCGCTCAAGGAGTTTCCCGTCGATGGTGCCTTGAATGTGTTG
GGACAGTTCCTGGAATCGAACCTGGAGCACGTGTCAAACAAGTCCGCCTA
CCTATGCGGCGTGATGAAGACGTACCGACAGAAGAGTCGAGCCAGCCAAC
AGGGCGTGGCCGCGCCCGCAACTGTCAAAGGTCCCGACGAGGACAAGATC
AAGAAAATCCTCGAGCGCACCGGCTACACATTAGATGTGACGACAGGTCA
GCGTAAATACGGCGGACCGCCGCCGCATTGGGAGGGAAATGTGCCAGGCA
ACGGTTGCGAGGTTTTCTGCGGCAAGATACCCAAGGACATGTACGAGGAC
GAACTGATTCCGCTATTCGAGAACTGCGGCATAATCTGGGACCTACGACT
CATGATGGACCCGATGACGGGCACAAATCGTGGTTATGCATTTGTCACAT
TCACAAATCGCGAAGCGGCCGTCAATGCAGTGCGACAGCTAAATGATTTT
GAAATTCGGACAGGCAAAAAGATTGGTGTTACGATATCATTTAACAATCA
CCGGCTATTTGTCGGCAATATACCTAAGAATAGAGATCGCGACGAATTAA
TTGAGGAATTTTCAAAACATGCACCTGGCCTATACGAGGTAATCATATAC
AGTTCGCCAGATGATAAGAAAAAGAATCGCGGCTTTTGCTTTCTTGAGTA
CGAGTCACACAAGGCGGCGTCTTTGGCCAAACGAAGACTTGGCACAGGAA
GAATTAAGGTTTGGGGATGTGATATAATAGTCGACTGGGCCGATCCACAG
GAGGAGCCGGATGAGCAAACAATGTCCAAGGTTAAAGTTCTTTATGTGCG
AAATCTTACCCAGGACGTCTCAGAGGATAAACTGAAGGAACAATTTGAGC
AATACGGAAAAGTGGAACGCGTTAAGAAAATTAAAGACTATGCCTTTATA
CACTTTGAGGATCGTGATAGCGCCGTCGAAGCTATGCGTGGCCTTAATGG
CAAGGAGATCGGCGCCTCGAATATTGAGGTCTCTCTAGCCAAACCCCCCT
CGGACAAAAAGAAAAAGGAGGAGATTCTGCGTGCTCGTGAGCGCCGCATG
ATGCAAATGATGCAAGCGCGTCCCGGGATCGTGGGAAACCTGTCGCCGAC
ACATCCTAGCATAATGTCCTTGACGCCCATGCGCCCAGGGGCGCGCATGC
CGCTGCGTACGCCGATACCCCGTGAATACGTAGTCGGTAAACGTAAGTTC
GATGGAGGTCACCAAAATCCGGCAGATGTTAAGCGACGTTACCCGAGCGG
TTTAATAGGAAATGGCGGCAGTTGGGGCAGTTTACCGCTACCACAGCAAC
CTTTAGGCACCAATGGTGAACAGTGGTACATGGATACGTTTTCGGCATGG
AGTTAAAAGCTTTCTAGACCAT

BS07872.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
Syp-RC 1590 CG17838-PC 1..1590 17..1606 7950 100 Plus
Syp-RM 2100 CG17838-PM 103..1516 17..1430 7070 100 Plus
Syp-RJ 2286 CG17838-PJ 127..1446 17..1336 6600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Syp-RC 2740 CG17838-RC 1050..2641 17..1608 7960 100 Plus
Syp-RM 3407 CG17838-RM 611..2024 17..1430 7070 100 Plus
Syp-RJ 2610 CG17838-RJ 350..1669 17..1336 6600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20791935..20792251 132..448 1585 100 Plus
3R 32079331 3R 20792311..20792555 444..688 1225 100 Plus
3R 32079331 3R 20805946..20806124 1430..1608 895 100 Plus
3R 32079331 3R 20797534..20797678 1086..1230 725 100 Plus
3R 32079331 3R 20795136..20795274 686..824 695 100 Plus
3R 32079331 3R 20797144..20797279 825..960 680 100 Plus
3R 32079331 3R 20797343..20797474 957..1088 660 100 Plus
3R 32079331 3R 20791747..20791865 17..135 595 100 Plus
3R 32079331 3R 20797745..20797853 1227..1335 545 100 Plus
3R 32079331 3R 20798314..20798409 1335..1430 480 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:10:12 has no hits.

BS07872.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:36 Download gff for BS07872.complete
Subject Subject Range Query Range Percent Splice Strand
CG17838-RC 1..1590 17..1606 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:29 Download gff for BS07872.complete
Subject Subject Range Query Range Percent Splice Strand
CG17838-RC 899..2486 17..1604 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:47 Download gff for BS07872.complete
Subject Subject Range Query Range Percent Splice Strand
Syp-RC 1050..2637 17..1604 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:36 Download gff for BS07872.complete
Subject Subject Range Query Range Percent Splice Strand
CG17838-RC 889..2490 8..1608 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:38 Download gff for BS07872.complete
Subject Subject Range Query Range Percent Splice Strand
Syp-RC 1050..2637 17..1604 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:38 Download gff for BS07872.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20797536..20797676 1088..1228 100 -> Plus
3R 20797747..20797853 1229..1335 100 -> Plus
3R 20798315..20798409 1336..1430 100 -> Plus
3R 20805947..20806120 1431..1604 100   Plus
3R 20791747..20791863 17..133 100 -> Plus
3R 20791937..20792249 134..446 100 -> Plus
3R 20792314..20792555 447..688 100 -> Plus
3R 20795139..20795274 689..824 100 -> Plus
3R 20797144..20797277 825..958 100 -> Plus
3R 20797345..20797473 959..1087 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:47 Download gff for BS07872.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16623258..16623398 1088..1228 100 -> Plus
arm_3R 16623469..16623575 1229..1335 100 -> Plus
arm_3R 16624037..16624131 1336..1430 100 -> Plus
arm_3R 16631669..16631842 1431..1604 100   Plus
arm_3R 16617469..16617585 17..133 100 -> Plus
arm_3R 16617659..16617971 134..446 100 -> Plus
arm_3R 16618036..16618277 447..688 100 -> Plus
arm_3R 16620861..16620996 689..824 100 -> Plus
arm_3R 16622866..16622999 825..958 100 -> Plus
arm_3R 16623067..16623195 959..1087 100 -> Plus

BS07872.pep Sequence

Translation from 16 to 1605

> BS07872.pep
MAEGNGELLDDINQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKT
GKLAHAELDERALDALKEFPVDGALNVLGQFLESNLEHVSNKSAYLCGVM
KTYRQKSRASQQGVAAPATVKGPDEDKIKKILERTGYTLDVTTGQRKYGG
PPPHWEGNVPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPM
TGTNRGYAFVTFTNREAAVNAVRQLNDFEIRTGKKIGVTISFNNHRLFVG
NIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKA
ASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQD
VSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNGKEIGA
SNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARPGIVGNLSPTHPSIM
SLTPMRPGARMPLRTPIPREYVVGKRKFDGGHQNPADVKRRYPSGLIGNG
GSWGSLPLPQQPLGTNGEQWYMDTFSAWS*

BS07872.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
Syp-PC 529 CG17838-PC 1..529 1..529 2806 100 Plus
Syp-PH 534 CG17838-PH 6..534 1..529 2681 95.7 Plus
Syp-PE 571 CG17838-PE 43..571 1..529 2681 95.7 Plus
Syp-PF 529 CG17838-PF 1..529 1..529 2681 95.7 Plus
Syp-PA 563 CG17838-PA 35..563 1..529 2681 95.7 Plus