Clone BS07875 Report

Search the DGRC for BS07875

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:78
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptPhKgamma-RB
Protein status:BS07875.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07875.3prime Sequence

930 bp (859 high quality bases) assembled on 2006-01-06

> BS07875.3prime
ATGGTCTAGAAAGCTTCTATCGGCTGAGATTGTTGATGTAGAGCGCGTGG
AGCTCCGTGCGGGGAGTATTCTCGAAGAGGGCGGCCCGATTCTGGCCCTC
ACCCTTCTTGACCCAATGCCCGTAGACACGGAAGGCACAGCCATCGATGA
CCTTGCGCAGAACCTTGACGCGATACGGATCCCGGATGGCCTCCTCAACG
TGCAGCGGCTCGGCGGTGAAGCGTAGGCGCCGTATCCGAATGATGGCCCG
TATCACGAGTATGGCGAATTGGAACTTTTTGCGCGCGTTGAAGCGACTTT
GTTTGCGCAGCAGTGCGATCTCAGTGATGCGACTCATTCGTCGGGACTTG
GTCGACAGGCTGCGCTTGAGGCCATCAATGTTTTGCTCGAACAGCATTTG
GTTGAAGAATGGATGTCTTAATACTTCCTTGACGGTTATACGTTGCGAAG
GATCAACGACTAGACATTTGCGTATCAGATCCTTGGGATCCTCTGAAATA
TCAGCCCACTCCGGCGAGGTGAAGCTGTACTTGCCCTCCATGATATTCCG
CAGCATGACCATCTGCTTGCGGTGCCAGAAAGGTGGACAACCGACGAGCA
GCGTAAACATAATCACGCCACAGGCCCATATGTCGACTTCCTGCGAGTAG
CCGGGGGATCCCTCGAACATGTTGCACTTGAGCGTTTCGGGAGCCAAATA
ACCCGGCGTTCCGCACAGATTTGTAAGTTTCTCGCCCTCTTGCAACTGCT
TGGCGAAGCCAAAATCCGTGATCTTAACGTTGTGGTTCTCGTCCAGCAAG
ATATTCTCGGGCTTAAGATCCCGATGGACAATGCTCTTCGCGTGTATGTA
CTCGACGCCCTCAAAGATTTTGTCGCATATGGTGCGCGTCTTCTTCTCGG
ATAGCGTCACCACAGAGGTCAGATAGTCGA

BS07875.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1830-PB 1260 PhKgamma-RB 407..1260 870..17 4270 100 Minus
CG1830-PC 1509 PhKgamma-RC 407..882 870..395 2380 100 Minus
CG1830-PA 1509 PhKgamma-RA 407..882 870..395 2380 100 Minus
CG1830-PC 1509 PhKgamma-RC 1393..1509 311..195 585 100 Minus
CG1830-PA 1509 PhKgamma-RA 1393..1509 311..195 585 100 Minus
CG1830-PB 1260 PhKgamma-RB 347..398 930..879 260 100 Minus
CG1830-PC 1509 PhKgamma-RC 347..398 930..879 260 100 Minus
CG1830-PA 1509 PhKgamma-RA 347..398 930..879 260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
PhKgamma-RH 2522 CG1830-RH 858..1774 930..14 4540 99.8 Minus
PhKgamma-RB 2421 CG1830-RB 757..1673 930..14 4540 99.8 Minus
PhKgamma-RF 2232 CG1830-RF 652..1190 930..392 2650 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11697386..11697595 930..721 955 99.1 Minus
X 23542271 X 11703289..11703450 311..150 810 100 Minus
X 23542271 X 11703507..11703646 153..14 700 100 Minus
X 23542271 X 11698299..11698435 629..493 685 100 Minus
X 23542271 X 11698493..11698597 499..395 510 99 Minus
X 23542271 X 11697661..11697751 720..630 455 100 Minus
X 23542271 X 11699322..11699406 395..311 425 100 Minus
Blast to na_te.dros performed 2015-02-10 17:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dm88 4558 Dm88 DM88 4558bp 2847..2898 152..101 116 69.2 Minus

BS07875.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:31 Download gff for BS07875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1830-PB 348..1260 17..929 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:33 Download gff for BS07875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1830-PB 348..1260 17..929 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:32:15 Download gff for BS07875.3prime
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RB 758..1679 9..929 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:21 Download gff for BS07875.3prime
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RB 758..1679 9..929 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:21 Download gff for BS07875.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11697387..11697595 721..929 99 -> Minus
X 11697661..11697751 630..720 100 -> Minus
X 11698299..11698435 493..629 100 -> Minus
X 11698500..11698597 395..492 100 -> Minus
X 11699323..11699406 311..394 100 -> Minus
X 11703290..11703448 152..310 100 -> Minus
X 11703509..11703652 9..151 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:32:15 Download gff for BS07875.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11591420..11591628 721..929 99 -> Minus
arm_X 11591694..11591784 630..720 100 -> Minus
arm_X 11592332..11592468 493..629 100 -> Minus
arm_X 11592533..11592630 395..492 100 -> Minus
arm_X 11593356..11593439 311..394 100 -> Minus
arm_X 11597323..11597481 152..310 100 -> Minus
arm_X 11597542..11597685 9..151 97   Minus

BS07875.5prime Sequence

886 bp (844 high quality bases) assembled on 2006-01-06

> BS07875.5prime
GAAGTTATCAGTCGACATGGCCAAGGACGAGGAGGATGATCTGCTGCCCG
ACAAGGATGCGGCCAAGGGCTTCTATGCCAAATACGAGCCCAAGGAGATT
CTGGGCAGGGGCATCAGTTCGACCGTGAGGCGATGTATCGAAAAGGAGAC
GGGCAAGGAGTTTGCCGCCAAGATCATCGACTTGGGCGCCACCACAGAGT
CAGGCGAGACGAATCCATATCACATGCTGGAAGCAACCAGACAAGAAATC
TCAATACTGCGCCAGGTCATGGGGCATCCCTACATAATTGATCTGCAGGA
TGTGTTCGAGTCAGATGCATTTGTTTTCCTCGTCTTCGAGCTGTGTCCCA
AAGGTGAACTCTTCGACTATCTGACCTCTGTGGTGACGCTATCCGAGAAG
AAGACGCGCACCATTATGCGACAAATCTTTGAGGGCGTCGAGTACATACA
CGCGAAGAGCATTGTCCATCGGGATCTTAAGCCCGAGAATATCTTGCTGG
ACGAGAACCACAACGTTAAGATCACGGATTTTGGCTTCGCCAAGCAGTTG
CAAGAGGGCGAGAAACTTACAAATCTGTGCGGAACGCCGGGTTATTTGGC
TCCCGAAACGCTCAAGTGCAACATGTTCGAGGGATCCCCCGGCTACTCGC
AGGAAGTCGACATATGGGCCTGTGGCGTGATTATGTTTACGCTGCTCGTC
GGTTGTCCACCTTTCTGGCACCGCAAGCAGATGGTCATGCTGCGGAATAT
CATGGAGGGCAAGTACAGCTTCACCTCGCCGGAGTGGGCTGATATTTCAG
AGGATCCCAAGGATCTGATACGCAAATGTCTAGTCGTTGATCCTTCGNCA
CGTATAACCGTCAAGGAAGTATTAAGACATCCATTC

BS07875.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1830-PB 1260 PhKgamma-RB 1..870 17..886 4306 99.7 Plus
CG1830-PC 1509 PhKgamma-RC 1..870 17..886 4306 99.7 Plus
CG1830-PA 1509 PhKgamma-RA 1..870 17..886 4306 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
PhKgamma-RH 2522 CG1830-RH 512..1381 17..886 4324 99.8 Plus
PhKgamma-RF 2232 CG1830-RF 306..1175 17..886 4324 99.8 Plus
PhKgamma-RE 3111 CG1830-RE 678..1547 17..886 4324 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11697311..11697595 288..572 1425 100 Plus
X 23542271 X 11697063..11697244 106..287 910 100 Plus
X 23542271 X 11698299..11698435 664..800 685 100 Plus
X 23542271 X 11696449..11696541 17..109 465 100 Plus
X 23542271 X 11697661..11697751 573..663 455 100 Plus
X 23542271 X 11698493..11698585 794..886 424 96.8 Plus
Blast to na_te.dros performed 2015-02-12 04:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Helena 1317 Helena HEL 1317bp 923..968 363..318 113 71.7 Minus

BS07875.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:26:32 Download gff for BS07875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1830-PB 1..870 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:21:34 Download gff for BS07875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1830-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:27:24 Download gff for BS07875.5prime
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RE 674..1547 12..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:33 Download gff for BS07875.5prime
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RE 674..1547 12..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:33 Download gff for BS07875.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11697311..11697595 288..572 100 -> Plus
X 11697661..11697751 573..663 100 -> Plus
X 11698299..11698435 664..800 100 -> Plus
X 11698500..11698585 801..886 97   Plus
X 11696445..11696540 12..108 97 -> Plus
X 11697066..11697244 109..287 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:27:24 Download gff for BS07875.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11592332..11592468 664..800 100 -> Plus
arm_X 11592533..11592618 801..886 97   Plus
arm_X 11590478..11590573 12..108 97 -> Plus
arm_X 11591099..11591277 109..287 100 -> Plus
arm_X 11591344..11591628 288..572 100 -> Plus
arm_X 11591694..11591784 573..663 100 -> Plus

BS07875.complete Sequence

1292 bp (1292 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636017

> BS07875.complete
GAAGTTATCAGTCGACATGGCCAAGGACGAGGAGGATGATCTGCTGCCCG
ACAAGGATGCGGCCAAGGGCTTCTATGCCAAATACGAGCCCAAGGAGATT
CTGGGCAGGGGCATCAGTTCGACCGTGAGGCGATGTATCGAAAAGGAGAC
GGGCAAGGAGTTTGCCGCCAAGATCATCGACTTGGGCGCCACCACAGAGT
CAGGCGAGACGAATCCATATCACATGCTGGAAGCAACCAGACAAGAAATC
TCAATACTGCGCCAGGTCATGGGGCATCCCTACATAATTGATCTGCAGGA
TGTGTTCGAGTCAGATGCATTTGTTTTCCTCGTCTTCGAGCTGTGTCCCA
AAGGTGAACTCTTCGACTATCTGACCTCTGTGGTGACGCTATCCGAGAAG
AAGACGCGCACCATTATGCGACAAATCTTTGAGGGCGTCGAGTACATACA
CGCGAAGAGCATTGTCCATCGGGATCTTAAGCCCGAGAATATCTTGCTGG
ACGAGAACCACAACGTTAAGATCACGGATTTTGGCTTCGCCAAGCAGTTG
CAAGAGGGCGAGAAACTTACAAATCTGTGCGGAACGCCGGGTTATTTGGC
TCCCGAAACGCTCAAGTGCAACATGTTCGAGGGATCCCCCGGCTACTCGC
AGGAAGTCGACATATGGGCCTGTGGCGTGATTATGTTTACGCTGCTCGTC
GGTTGTCCACCTTTCTGGCACCGCAAGCAGATGGTCATGCTGCGGAATAT
CATGGAGGGCAAGTACAGCTTCACCTCGCCGGAGTGGGCTGATATTTCAG
AGGATCCCAAGGATCTGATACGCAAATGTCTAGTCGTTGATCCTTCGCAA
CGTATAACCGTCAAGGAAGTATTAAGACATCCATTCTTCAACCAAATGCT
GTTCGAGCAAAACATTGATGGCCTCAAGCGCAGCCTGTCGACCAAGTCCC
GACGAATGAGTCGCATCACTGAGATCGCACTGCTGCGCAAACAAAGTCGC
TTCAACGCGCGCAAAAAGTTCCAATTCGCCATACTCGTGATACGGGCCAT
CATTCGGATACGGCGCCTACGCTTCACCGCCGAGCCGCTGCACGTTGAGG
AGGCCATCCGGGATCCGTATCGCGTCAAGGTTCTGCGCAAGGTCATCGAT
GGCTGTGCCTTCCGTGTCTACGGGCATTGGGTCAAGAAGGGTGAGGGCCA
GAATCGGGCCGCCCTCTTCGAGAATACTCCCCGCACGGAGCTCCACGCGC
TCTACATCAACAATCTCAGCCGATAGAAGCTTTCTAGACCAT

BS07875.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
PhKgamma-RH 1260 CG1830-PH 1..1260 17..1276 6300 100 Plus
PhKgamma-RB 1260 CG1830-PB 1..1260 17..1276 6300 100 Plus
PhKgamma-RF 1176 CG1830-PF 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
PhKgamma-RH 2522 CG1830-RH 512..1774 17..1279 6315 100 Plus
PhKgamma-RB 2421 CG1830-RB 411..1673 17..1279 6315 100 Plus
PhKgamma-RF 2232 CG1830-RF 306..1190 17..901 4425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11697311..11697595 288..572 1425 100 Plus
X 23542271 X 11697063..11697244 106..287 910 100 Plus
X 23542271 X 11703289..11703450 982..1143 810 100 Plus
X 23542271 X 11703507..11703646 1140..1279 700 100 Plus
X 23542271 X 11698299..11698435 664..800 685 100 Plus
X 23542271 X 11698493..11698597 794..898 510 99 Plus
X 23542271 X 11696449..11696541 17..109 465 100 Plus
X 23542271 X 11697661..11697751 573..663 455 100 Plus
X 23542271 X 11699322..11699406 898..982 425 100 Plus
Blast to na_te.dros performed 2014-11-27 21:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dm88 4558 Dm88 DM88 4558bp 2847..2898 1141..1192 116 69.2 Plus
Helena 1317 Helena HEL 1317bp 923..968 363..318 113 71.7 Minus

BS07875.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:37 Download gff for BS07875.complete
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RB 1..1260 17..1276 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:44:13 Download gff for BS07875.complete
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RB 413..1685 12..1284 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:34 Download gff for BS07875.complete
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RB 411..1670 17..1276 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:37 Download gff for BS07875.complete
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RB 413..1685 12..1284 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:36 Download gff for BS07875.complete
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RB 411..1670 17..1276 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:36 Download gff for BS07875.complete
Subject Subject Range Query Range Percent Splice Strand
X 11703290..11703448 983..1141 100 -> Plus
X 11703509..11703643 1142..1276 100   Plus
X 11697311..11697595 288..572 100 -> Plus
X 11697661..11697751 573..663 100 -> Plus
X 11698299..11698435 664..800 100 -> Plus
X 11698500..11698597 801..898 100 -> Plus
X 11699323..11699406 899..982 100 -> Plus
X 11696449..11696540 17..108 100 -> Plus
X 11697066..11697244 109..287 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:34 Download gff for BS07875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11590482..11590573 17..108 100 -> Plus
arm_X 11591099..11591277 109..287 100 -> Plus
arm_X 11591344..11591628 288..572 100 -> Plus
arm_X 11591694..11591784 573..663 100 -> Plus
arm_X 11592332..11592468 664..800 100 -> Plus
arm_X 11592533..11592630 801..898 100 -> Plus
arm_X 11593356..11593439 899..982 100 -> Plus
arm_X 11597323..11597481 983..1141 100 -> Plus
arm_X 11597542..11597676 1142..1276 100   Plus

BS07875.pep Sequence

Translation from 16 to 1275

> BS07875.pep
MAKDEEDDLLPDKDAAKGFYAKYEPKEILGRGISSTVRRCIEKETGKEFA
AKIIDLGATTESGETNPYHMLEATRQEISILRQVMGHPYIIDLQDVFESD
AFVFLVFELCPKGELFDYLTSVVTLSEKKTRTIMRQIFEGVEYIHAKSIV
HRDLKPENILLDENHNVKITDFGFAKQLQEGEKLTNLCGTPGYLAPETLK
CNMFEGSPGYSQEVDIWACGVIMFTLLVGCPPFWHRKQMVMLRNIMEGKY
SFTSPEWADISEDPKDLIRKCLVVDPSQRITVKEVLRHPFFNQMLFEQNI
DGLKRSLSTKSRRMSRITEIALLRKQSRFNARKKFQFAILVIRAIIRIRR
LRFTAEPLHVEEAIRDPYRVKVLRKVIDGCAFRVYGHWVKKGEGQNRAAL
FENTPRTELHALYINNLSR*

BS07875.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
PhKgamma-PH 419 CG1830-PH 1..419 1..419 2182 100 Plus
PhKgamma-PB 419 CG1830-PB 1..419 1..419 2182 100 Plus
PhKgamma-PF 391 CG1830-PF 1..391 1..419 2011 93.3 Plus
PhKgamma-PE 560 CG1830-PE 1..295 1..295 1553 99.7 Plus
PhKgamma-PD 560 CG1830-PD 1..295 1..295 1553 99.7 Plus
PhKgamma-PE 560 CG1830-PE 464..560 323..419 498 100 Plus